Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47393 * 2 1 4 4 C 1.50709 * 109.46963 * 240.00740 * 2 1 3 5 5 H 1.08000 * 119.99759 * 245.51760 * 4 2 1 6 6 C 1.37872 * 119.99968 * 65.51109 * 4 2 1 7 7 N 1.31512 * 120.00322 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00010 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47067 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47271 * 120.00008 * 8 6 4 11 11 H 1.48500 * 109.47286 * 240.00209 * 8 6 4 12 12 N 1.46893 * 109.47364 * 120.00866 * 2 1 3 13 13 C 1.46847 * 111.00384 * 184.59617 * 12 2 1 14 14 C 1.53033 * 109.52417 * 185.83976 * 13 12 2 15 15 H 1.08997 * 109.50628 * 60.76192 * 14 13 12 16 16 C 1.53006 * 109.50039 * 180.83838 * 14 13 12 17 17 O 1.42906 * 109.46745 * 184.91678 * 16 14 13 18 18 C 1.53121 * 109.27891 * 300.81251 * 14 13 12 19 19 C 1.53120 * 109.15491 * 57.65895 * 18 14 13 20 20 C 1.46852 * 111.00011 * 308.80509 * 12 2 1 21 21 H 1.08994 * 109.46069 * 54.13764 * 20 12 2 22 22 C 1.53009 * 109.45882 * 294.17665 * 20 12 2 23 23 H 1.09003 * 109.47428 * 59.99278 * 1 2 3 24 24 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 299.99325 * 1 2 3 26 26 H 0.96997 * 120.00428 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46232 * 65.81738 * 13 12 2 28 28 H 1.09003 * 109.45590 * 305.85423 * 13 12 2 29 29 H 1.08992 * 109.47065 * 304.91826 * 16 14 13 30 30 H 1.09000 * 109.47126 * 64.92157 * 16 14 13 31 31 H 0.96700 * 113.99413 * 180.02562 * 17 16 14 32 32 H 1.08995 * 109.52323 * 177.55886 * 18 14 13 33 33 H 1.09000 * 109.52341 * 297.75654 * 18 14 13 34 34 H 1.09008 * 109.50323 * 182.40310 * 19 18 14 35 35 H 1.09000 * 109.53968 * 62.30626 * 19 18 14 36 36 H 1.09000 * 109.46772 * 64.83386 * 22 20 12 37 37 H 1.09002 * 109.46880 * 184.83036 * 22 20 12 38 38 H 1.08999 * 109.46773 * 304.83625 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5777 -1.6374 -1.1341 6 6 1.7954 -0.1766 -2.4796 7 7 1.1316 0.9526 -2.5971 8 14 2.4187 -1.0566 -4.0049 9 1 3.1307 -2.2968 -3.6046 10 1 1.2700 -1.4060 -4.8789 11 1 3.3502 -0.1669 -4.7438 12 7 2.0197 -0.6926 1.1993 13 6 3.4835 -0.6178 1.2894 14 6 3.9676 -1.4693 2.4653 15 1 3.6780 -2.5080 2.3061 16 6 5.4910 -1.3743 2.5715 17 8 5.9530 -2.2576 3.5955 18 6 3.3311 -0.9535 3.7588 19 6 1.8067 -0.9965 3.6206 20 6 1.3851 -0.1589 2.4113 21 1 0.3014 -0.1990 2.3015 22 6 1.8228 1.2925 2.6189 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 0.9653 1.3283 -3.4757 27 1 3.7854 0.4182 1.4425 28 1 3.9237 -0.9914 0.3649 29 1 5.9399 -1.6558 1.6190 30 1 5.7749 -0.3514 2.8188 31 1 6.9121 -2.2492 3.7188 32 1 3.6391 -1.5839 4.5929 33 1 3.6517 0.0727 3.9386 34 1 1.3479 -0.5905 4.5223 35 1 1.4824 -2.0276 3.4799 36 1 1.4476 1.9058 1.7996 37 1 1.4213 1.6616 3.5626 38 1 2.9114 1.3439 2.6421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688716740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = -58.350986 kcal Electronic energy + Delta-G solvation = -17076.899011 eV Core-core repulsion = 14532.799515 eV Total energy + Delta-G solvation = -2544.099495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.26128 -36.69043 -34.19792 -32.26148 -31.41356 -28.67920 -27.41568 -25.30108 -24.30503 -23.09743 -21.30235 -19.57153 -17.95331 -17.00851 -16.25892 -15.73765 -14.81862 -14.35764 -14.32120 -14.10795 -13.24042 -12.87905 -12.61205 -12.46753 -12.19581 -11.97500 -11.67602 -11.31429 -11.05760 -10.94369 -10.57793 -10.53704 -10.31066 -10.24550 -10.02696 -9.92740 -9.86064 -9.68348 -9.32396 -8.83203 -8.39217 -7.04979 -5.99594 -4.02401 3.30324 3.38484 3.43221 4.32807 4.44494 5.00758 5.19427 5.28720 5.33643 5.37863 5.56369 5.71135 5.77566 5.84519 5.98399 6.02244 6.18232 6.20867 6.23932 6.37836 6.46432 6.50889 6.68128 6.69760 6.79913 6.84493 7.00759 7.06433 7.16741 7.55510 7.71319 7.75973 7.88119 8.26038 8.35185 8.66953 9.06468 9.62607 11.08475 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.008917 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.407535 B = 3139.304099 C = 3897.104861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.212 3.788 3 H 0.006 0.994 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.525 5.525 13 C 0.071 3.929 14 C -0.085 4.085 15 H 0.080 0.920 16 C 0.081 3.919 17 O -0.574 6.574 18 C -0.107 4.107 19 C -0.110 4.110 20 C 0.073 3.927 21 H 0.082 0.918 22 C -0.184 4.184 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.013 0.987 26 H 0.259 0.741 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.372 0.628 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 -1.582 10.342 11.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.106 3.894 3 H 0.023 0.977 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.249 5.249 13 C -0.058 4.058 14 C -0.104 4.104 15 H 0.099 0.901 16 C 0.003 3.997 17 O -0.378 6.378 18 C -0.144 4.144 19 C -0.148 4.148 20 C -0.036 4.036 21 H 0.100 0.900 22 C -0.243 4.243 23 H 0.093 0.907 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.218 0.782 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.594 -2.077 10.184 11.364 hybrid contribution 1.117 0.690 -0.965 1.630 sum 5.711 -1.387 9.219 10.933 Atomic orbital electron populations 1.21860 0.98138 0.99499 0.99550 1.19223 0.91850 0.92406 0.85885 0.97678 1.21177 1.34665 1.07982 0.89934 0.91957 1.24938 0.95423 0.95002 0.98970 1.69934 1.40976 1.19086 1.23438 0.86515 0.78550 0.79712 0.83084 1.19727 1.21092 1.21235 1.62176 1.03822 1.56676 1.02199 1.21831 0.90230 0.96604 0.97128 1.21209 0.91594 1.01707 0.95875 0.90135 1.22241 0.95709 0.91999 0.89769 1.86489 1.26788 1.66204 1.58360 1.21531 0.95496 1.00264 0.97158 1.21601 0.95528 1.00660 0.96970 1.21724 0.99719 0.91233 0.90946 0.90011 1.22471 1.01611 0.99172 1.01019 0.90680 0.94598 0.96848 0.93125 0.95766 0.89983 0.93551 0.94105 0.78197 0.92251 0.92767 0.92682 0.91648 0.92331 0.93522 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.50 37.16 0.32 -2.89 16 2 C 0.21 5.30 1.47 -68.87 -0.10 5.20 16 3 H 0.01 0.15 7.01 -51.93 -0.36 -0.21 16 4 C -0.50 -13.62 7.68 -34.44 -0.26 -13.89 16 5 H 0.06 1.72 7.26 -52.49 -0.38 1.34 16 6 C 0.06 1.59 5.32 -17.82 -0.09 1.50 16 7 N -0.89 -25.60 11.74 55.43 0.65 -24.95 16 8 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.52 -11.23 4.46 -220.14 -0.98 -12.21 16 13 C 0.07 1.38 4.28 -3.84 -0.02 1.36 16 14 C -0.08 -1.40 2.59 -90.54 -0.23 -1.64 16 15 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 16 C 0.08 1.12 6.43 37.16 0.24 1.36 16 17 O -0.57 -7.50 13.25 -35.23 -0.47 -7.97 16 18 C -0.11 -1.64 4.85 -26.61 -0.13 -1.77 16 19 C -0.11 -1.73 5.61 -26.65 -0.15 -1.88 16 20 C 0.07 1.34 2.48 -67.72 -0.17 1.17 16 21 H 0.08 1.55 5.83 -51.93 -0.30 1.25 16 22 C -0.18 -3.19 8.06 37.16 0.30 -2.89 16 23 H 0.07 1.99 6.52 -51.93 -0.34 1.65 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.01 0.28 6.19 -51.93 -0.32 -0.04 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.47 6.09 -51.93 -0.32 0.16 16 28 H 0.08 1.74 6.72 -51.93 -0.35 1.39 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.37 3.00 9.12 45.56 0.42 3.41 16 32 H 0.06 0.88 7.90 -51.93 -0.41 0.47 16 33 H 0.05 0.81 6.67 -51.93 -0.35 0.46 16 34 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.13 6.99 -51.93 -0.36 0.76 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.96 4.80 -51.93 -0.25 0.71 16 LS Contribution 284.00 15.07 4.28 4.28 Total: -1.00 -29.34 284.00 -7.26 -36.60 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.42 Total: 2.24 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.30 Total: -14.36 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.33 Total: -37.16 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.47 Total: -7.97 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.34 -7.26 -36.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688716740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.748 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds