Wall clock time and date at job start Mon Mar 30 2020 02:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47393 * 2 1 4 4 C 1.50709 * 109.46963 * 240.00740 * 2 1 3 5 5 H 1.08000 * 119.99759 * 245.51760 * 4 2 1 6 6 C 1.37872 * 119.99968 * 65.51109 * 4 2 1 7 7 N 1.31512 * 120.00322 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00010 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47067 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47271 * 120.00008 * 8 6 4 11 11 H 1.48500 * 109.47286 * 240.00209 * 8 6 4 12 12 N 1.46893 * 109.47364 * 120.00866 * 2 1 3 13 13 C 1.46847 * 111.00384 * 184.59617 * 12 2 1 14 14 C 1.53033 * 109.52417 * 185.83976 * 13 12 2 15 15 H 1.08997 * 109.50628 * 60.76192 * 14 13 12 16 16 C 1.53006 * 109.50039 * 180.83838 * 14 13 12 17 17 O 1.42906 * 109.46745 * 184.91678 * 16 14 13 18 18 C 1.53121 * 109.27891 * 300.81251 * 14 13 12 19 19 C 1.53120 * 109.15491 * 57.65895 * 18 14 13 20 20 C 1.46852 * 111.00011 * 308.80509 * 12 2 1 21 21 H 1.08994 * 109.46069 * 54.13764 * 20 12 2 22 22 C 1.53009 * 109.45882 * 294.17665 * 20 12 2 23 23 H 1.09003 * 109.47428 * 59.99278 * 1 2 3 24 24 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47239 * 299.99325 * 1 2 3 26 26 H 0.96997 * 120.00428 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.46232 * 65.81738 * 13 12 2 28 28 H 1.09003 * 109.45590 * 305.85423 * 13 12 2 29 29 H 1.08992 * 109.47065 * 304.91826 * 16 14 13 30 30 H 1.09000 * 109.47126 * 64.92157 * 16 14 13 31 31 H 0.96700 * 113.99413 * 180.02562 * 17 16 14 32 32 H 1.08995 * 109.52323 * 177.55886 * 18 14 13 33 33 H 1.09000 * 109.52341 * 297.75654 * 18 14 13 34 34 H 1.09008 * 109.50323 * 182.40310 * 19 18 14 35 35 H 1.09000 * 109.53968 * 62.30626 * 19 18 14 36 36 H 1.09000 * 109.46772 * 64.83386 * 22 20 12 37 37 H 1.09002 * 109.46880 * 184.83036 * 22 20 12 38 38 H 1.08999 * 109.46773 * 304.83625 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.5777 -1.6374 -1.1341 6 6 1.7954 -0.1766 -2.4796 7 7 1.1316 0.9526 -2.5971 8 14 2.4187 -1.0566 -4.0049 9 1 3.1307 -2.2968 -3.6046 10 1 1.2700 -1.4060 -4.8789 11 1 3.3502 -0.1669 -4.7438 12 7 2.0197 -0.6926 1.1993 13 6 3.4835 -0.6178 1.2894 14 6 3.9676 -1.4693 2.4653 15 1 3.6780 -2.5080 2.3061 16 6 5.4910 -1.3743 2.5715 17 8 5.9530 -2.2576 3.5955 18 6 3.3311 -0.9535 3.7588 19 6 1.8067 -0.9965 3.6206 20 6 1.3851 -0.1589 2.4113 21 1 0.3014 -0.1990 2.3015 22 6 1.8228 1.2925 2.6189 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8901 26 1 0.9653 1.3283 -3.4757 27 1 3.7854 0.4182 1.4425 28 1 3.9237 -0.9914 0.3649 29 1 5.9399 -1.6558 1.6190 30 1 5.7749 -0.3514 2.8188 31 1 6.9121 -2.2492 3.7188 32 1 3.6391 -1.5839 4.5929 33 1 3.6517 0.0727 3.9386 34 1 1.3479 -0.5905 4.5223 35 1 1.4824 -2.0276 3.4799 36 1 1.4476 1.9058 1.7996 37 1 1.4213 1.6616 3.5626 38 1 2.9114 1.3439 2.6421 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688716740.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:13 Heat of formation + Delta-G solvation = -79.499045 kcal Electronic energy + Delta-G solvation = -17077.816059 eV Core-core repulsion = 14532.799515 eV Total energy + Delta-G solvation = -2545.016544 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.75080 -37.85372 -35.92807 -33.92814 -32.99358 -30.47160 -28.79340 -27.30379 -25.68841 -24.63421 -22.87102 -21.16643 -19.39118 -18.37240 -18.06258 -17.40113 -16.32555 -15.94923 -15.82721 -15.47268 -14.82754 -14.51195 -14.19976 -13.83439 -13.56153 -13.43763 -13.35906 -12.95398 -12.87454 -12.58820 -12.44474 -12.22183 -11.93736 -11.91241 -11.83377 -11.36263 -11.32846 -10.95401 -10.74493 -10.71702 -10.47896 -8.78697 -8.11158 -6.21172 1.39321 1.41687 1.53344 2.42336 3.13260 3.19207 3.66733 3.86172 4.00430 4.09542 4.33761 4.35044 4.52929 4.56983 4.63998 4.66163 4.77839 4.81078 4.86632 4.93610 5.01113 5.03995 5.07686 5.14715 5.20009 5.31316 5.35246 5.45969 5.53657 5.62523 5.77605 5.81675 6.28936 6.49133 6.84165 6.95262 6.97601 7.48169 8.95964 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026984 B = 0.008917 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.407535 B = 3139.304099 C = 3897.104861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.219 3.781 3 H -0.028 1.028 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.535 5.535 13 C 0.075 3.925 14 C -0.080 4.080 15 H 0.062 0.938 16 C 0.088 3.912 17 O -0.585 6.585 18 C -0.100 4.100 19 C -0.103 4.103 20 C 0.067 3.933 21 H 0.074 0.926 22 C -0.176 4.176 23 H 0.048 0.952 24 H 0.032 0.968 25 H 0.035 0.965 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.030 0.970 37 H 0.076 0.924 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -2.065 11.787 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 H -0.010 1.010 4 C -0.551 4.551 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.259 5.259 13 C -0.053 4.053 14 C -0.099 4.099 15 H 0.081 0.919 16 C 0.010 3.990 17 O -0.393 6.393 18 C -0.138 4.138 19 C -0.141 4.141 20 C -0.041 4.041 21 H 0.092 0.908 22 C -0.234 4.234 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.095 0.905 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.470 -2.568 11.652 13.126 hybrid contribution 0.864 0.838 -1.365 1.820 sum 6.333 -1.731 10.287 12.204 Atomic orbital electron populations 1.21681 0.97775 0.99065 0.99319 1.18966 0.92063 0.90619 0.87082 1.00999 1.21419 1.34644 1.07773 0.91300 0.92895 1.25686 0.95615 0.95688 1.01793 1.70050 1.41854 1.20266 1.24105 0.85538 0.78077 0.78715 0.79502 1.19295 1.20691 1.20642 1.62106 1.05118 1.56439 1.02273 1.21759 0.89046 0.96996 0.97507 1.21098 0.93844 0.99815 0.95188 0.91937 1.22048 0.93715 0.92992 0.90288 1.86418 1.29174 1.65943 1.57761 1.21491 0.94851 1.00911 0.96506 1.21573 0.96159 0.99839 0.96546 1.21848 0.99088 0.92473 0.90700 0.90816 1.22378 1.01671 0.97918 1.01458 0.93346 0.94927 0.94581 0.93034 0.95954 0.92600 0.93529 0.92687 0.75488 0.91035 0.91877 0.89807 0.92303 0.95066 0.90502 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.50 71.98 0.61 -5.33 16 2 C 0.22 11.26 1.47 44.17 0.06 11.32 16 3 H -0.03 -1.57 7.01 -2.39 -0.02 -1.59 16 4 C -0.51 -28.68 7.68 25.60 0.20 -28.48 16 5 H 0.05 2.99 7.26 -2.91 -0.02 2.97 16 6 C 0.01 0.59 5.32 84.65 0.45 1.04 16 7 N -0.92 -53.90 11.74 21.45 0.25 -53.65 16 8 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.54 -23.05 4.46 -850.39 -3.79 -26.85 16 13 C 0.08 2.95 4.28 86.32 0.37 3.32 16 14 C -0.08 -2.55 2.59 -10.74 -0.03 -2.58 16 15 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.09 2.26 6.43 71.98 0.46 2.72 16 17 O -0.58 -13.63 13.25 -148.98 -1.97 -15.61 16 18 C -0.10 -2.78 4.85 30.67 0.15 -2.63 16 19 C -0.10 -3.00 5.61 30.65 0.17 -2.82 16 20 C 0.07 2.40 2.48 44.94 0.11 2.51 16 21 H 0.07 2.72 5.83 -2.39 -0.01 2.71 16 22 C -0.18 -5.84 8.06 71.99 0.58 -5.26 16 23 H 0.05 2.63 6.52 -2.39 -0.02 2.61 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.04 1.56 6.19 -2.39 -0.01 1.55 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.02 0.88 6.09 -2.39 -0.01 0.86 16 28 H 0.06 2.44 6.72 -2.39 -0.02 2.42 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.40 5.14 9.12 -74.06 -0.68 4.46 16 32 H 0.07 1.87 7.90 -2.39 -0.02 1.85 16 33 H 0.06 1.66 6.67 -2.39 -0.02 1.65 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.03 1.19 6.99 -2.39 -0.02 1.17 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.87 4.80 -2.39 -0.01 1.86 16 Total: -1.00 -63.35 284.00 0.01 -63.33 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.36 Total: 12.60 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 3.14 Total: -26.19 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -3.54 Total: -80.49 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -1.97 Total: -15.61 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -63.35 0.01 -63.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688716740.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.168 kcal (2) G-P(sol) polarization free energy of solvation -63.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds