Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47609 * 2 1 4 4 C 1.50707 * 109.47102 * 240.00044 * 2 1 3 5 5 H 1.07993 * 119.99993 * 239.99981 * 4 2 1 6 6 C 1.37878 * 119.99582 * 60.00161 * 4 2 1 7 7 N 1.31511 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99680 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47134 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46993 * 119.99949 * 8 6 4 11 11 H 1.48503 * 109.47564 * 240.00220 * 8 6 4 12 12 N 1.46900 * 109.47421 * 120.00235 * 2 1 3 13 13 C 1.48717 * 111.01824 * 184.48907 * 12 2 1 14 14 C 1.54382 * 104.51657 * 158.96799 * 13 12 2 15 15 H 1.08992 * 110.32302 * 95.21514 * 14 13 12 16 16 C 1.53006 * 110.32123 * 217.32103 * 14 13 12 17 17 C 1.54255 * 105.14732 * 336.26632 * 14 13 12 18 18 C 1.52998 * 110.32283 * 118.84810 * 17 14 13 19 19 C 1.53002 * 110.32648 * 241.05188 * 17 14 13 20 20 O 1.42901 * 109.47618 * 180.02562 * 19 17 14 21 21 C 1.48556 * 110.99878 * 300.00027 * 12 2 1 22 22 H 1.09008 * 109.47274 * 59.99482 * 1 2 3 23 23 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47260 * 299.99974 * 1 2 3 25 25 H 0.96997 * 119.99963 * 180.02562 * 7 6 4 26 26 H 1.09003 * 110.39121 * 40.24456 * 13 12 2 27 27 H 1.09002 * 110.51066 * 277.74801 * 13 12 2 28 28 H 1.09001 * 109.47002 * 177.16887 * 16 14 13 29 29 H 1.08993 * 109.46955 * 297.17324 * 16 14 13 30 30 H 1.09000 * 109.47050 * 57.17153 * 16 14 13 31 31 H 1.09005 * 109.47235 * 59.99717 * 18 17 14 32 32 H 1.09003 * 109.47720 * 179.97438 * 18 17 14 33 33 H 1.09001 * 109.47183 * 299.99934 * 18 17 14 34 34 H 1.09001 * 109.47319 * 300.00466 * 19 17 14 35 35 H 1.08997 * 109.46959 * 60.00415 * 19 17 14 36 36 H 0.96696 * 114.00218 * 180.02562 * 20 19 17 37 37 H 1.09001 * 110.41619 * 82.17734 * 21 12 2 38 38 H 1.08998 * 110.51168 * 319.78701 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5864 -4.8166 11 1 3.1472 -0.1857 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.5023 -0.6192 1.2896 14 6 3.8123 -0.8750 2.7802 15 1 4.0398 -1.9282 2.9442 16 6 4.9830 -0.0019 3.2369 17 6 2.5248 -0.4813 3.5331 18 6 1.9557 -1.6892 4.2801 19 6 2.8082 0.6628 4.5085 20 8 1.6050 1.0121 5.1957 21 6 1.5433 -0.0189 2.4348 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7089 1.1615 -3.4844 26 1 3.8524 0.3695 0.9927 27 1 3.9612 -1.3884 0.6685 28 1 5.1574 -0.1561 4.3017 29 1 5.8786 -0.2742 2.6787 30 1 4.7466 1.0466 3.0555 31 1 2.6911 -2.0517 4.9984 32 1 1.0476 -1.3959 4.8069 33 1 1.7232 -2.4806 3.5675 34 1 3.5602 0.3462 5.2313 35 1 3.1761 1.5279 3.9568 36 1 1.7103 1.7328 5.8317 37 1 0.5284 -0.3365 2.6738 38 1 1.5847 1.0641 2.3195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694723330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = -54.091302 kcal Electronic energy + Delta-G solvation = -17001.063338 eV Core-core repulsion = 14457.148557 eV Total energy + Delta-G solvation = -2543.914782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.48642 -36.37571 -34.46866 -32.10048 -30.92390 -28.85302 -26.72502 -25.55195 -24.35874 -23.97603 -20.94954 -19.48428 -18.05508 -17.31059 -16.26842 -15.30653 -14.91492 -14.47294 -14.11683 -13.78074 -13.12836 -12.99939 -12.63483 -12.46415 -12.14998 -11.95948 -11.81927 -11.23175 -11.10948 -11.07367 -10.82693 -10.57380 -10.38279 -10.17463 -10.05357 -9.97051 -9.93048 -9.66526 -9.56750 -8.82932 -8.39070 -7.23595 -5.97043 -4.01226 3.31739 3.39429 3.44309 4.34156 4.44391 4.89052 4.96514 5.12427 5.32088 5.36456 5.48025 5.55846 5.64296 5.69232 5.81192 5.88910 6.06886 6.09437 6.24652 6.28199 6.44552 6.51713 6.55834 6.71090 6.76810 6.79219 6.91041 7.11418 7.14475 7.53825 7.66666 7.74542 7.87756 8.20709 8.37528 8.61545 9.05897 9.63724 11.09922 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038637 B = 0.007455 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.518551 B = 3754.798636 C = 4082.060799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.203 3.797 3 H -0.002 1.002 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.505 5.505 13 C 0.054 3.946 14 C -0.091 4.091 15 H 0.077 0.923 16 C -0.149 4.149 17 C -0.062 4.062 18 C -0.125 4.125 19 C 0.088 3.912 20 O -0.570 6.570 21 C 0.053 3.947 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.007 0.993 25 H 0.259 0.741 26 H 0.036 0.964 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.045 0.955 36 H 0.372 0.628 37 H 0.072 0.928 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -0.179 13.115 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.096 3.904 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.230 5.230 13 C -0.075 4.075 14 C -0.110 4.110 15 H 0.096 0.904 16 C -0.206 4.206 17 C -0.063 4.063 18 C -0.182 4.182 19 C 0.010 3.990 20 O -0.374 6.374 21 C -0.075 4.075 22 H 0.103 0.897 23 H 0.053 0.947 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.217 0.783 37 H 0.090 0.910 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.564 -1.104 12.523 13.374 hybrid contribution 0.813 0.985 -0.586 1.405 sum 5.376 -0.119 11.937 13.093 Atomic orbital electron populations 1.21794 0.97674 0.99600 0.99922 1.19413 0.92514 0.91927 0.86539 0.98420 1.21155 1.30690 1.12134 0.89723 0.92019 1.24942 0.95298 0.95108 0.99021 1.69907 1.37172 1.23133 1.23204 0.86477 0.78583 0.79610 0.82947 1.19760 1.21054 1.21204 1.65510 1.04792 1.50560 1.02105 1.22943 0.91147 1.00169 0.93227 1.22038 0.93126 0.99787 0.96025 0.90420 1.21957 0.98207 0.99987 1.00445 1.21344 0.96016 0.94495 0.94395 1.21695 1.00312 0.96948 0.99279 1.22464 0.85831 0.96884 0.93805 1.86521 1.34646 1.57447 1.58788 1.22978 0.98147 0.96137 0.90255 0.89734 0.94745 0.97403 0.93113 0.94563 0.90637 0.92904 0.92570 0.92598 0.93810 0.92358 0.91896 0.93861 0.93672 0.78283 0.90968 0.95109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.82 37.15 0.33 -3.05 16 2 C 0.20 5.30 1.83 -68.87 -0.13 5.18 16 3 H 0.00 -0.05 7.98 -51.93 -0.41 -0.46 16 4 C -0.50 -13.99 8.16 -34.44 -0.28 -14.28 16 5 H 0.06 1.74 7.25 -52.49 -0.38 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -26.02 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.51 -11.32 5.19 -223.27 -1.16 -12.48 16 13 C 0.05 1.06 5.37 -2.09 -0.01 1.05 16 14 C -0.09 -1.41 3.30 -89.24 -0.29 -1.70 16 15 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 16 C -0.15 -1.87 7.93 37.16 0.29 -1.58 16 17 C -0.06 -0.98 0.83 -153.13 -0.13 -1.10 16 18 C -0.13 -1.85 8.09 37.16 0.30 -1.55 16 19 C 0.09 1.16 4.65 37.16 0.17 1.34 16 20 O -0.57 -7.50 12.71 -35.23 -0.45 -7.95 16 21 C 0.05 1.05 4.23 -2.19 -0.01 1.04 16 22 H 0.08 2.34 6.07 -51.92 -0.32 2.03 16 23 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.01 0.17 6.94 -51.93 -0.36 -0.19 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.04 0.75 7.61 -51.93 -0.40 0.36 16 27 H 0.08 1.54 7.65 -51.93 -0.40 1.15 16 28 H 0.05 0.57 6.88 -51.93 -0.36 0.21 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.72 6.69 -51.93 -0.35 0.37 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.88 7.62 -51.93 -0.40 0.48 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.49 6.84 -51.93 -0.35 0.14 16 35 H 0.05 0.60 6.71 -51.93 -0.35 0.25 16 36 H 0.37 3.04 9.12 45.56 0.42 3.45 16 37 H 0.07 1.47 7.39 -51.93 -0.38 1.09 16 38 H 0.03 0.64 7.66 -51.93 -0.40 0.24 16 LS Contribution 289.60 15.07 4.36 4.36 Total: -1.00 -30.38 289.60 -7.14 -37.53 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.66 Total: 0.41 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: 0.15 Total: -13.14 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.53 Total: -37.88 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.45 Total: -7.95 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.38 -7.14 -37.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694723330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.565 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds