Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08996 * 109.47609 * 2 1 4 4 C 1.50707 * 109.47102 * 240.00044 * 2 1 3 5 5 H 1.07993 * 119.99993 * 239.99981 * 4 2 1 6 6 C 1.37878 * 119.99582 * 60.00161 * 4 2 1 7 7 N 1.31511 * 120.00385 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99680 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47134 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46993 * 119.99949 * 8 6 4 11 11 H 1.48503 * 109.47564 * 240.00220 * 8 6 4 12 12 N 1.46900 * 109.47421 * 120.00235 * 2 1 3 13 13 C 1.48717 * 111.01824 * 184.48907 * 12 2 1 14 14 C 1.54382 * 104.51657 * 158.96799 * 13 12 2 15 15 H 1.08992 * 110.32302 * 95.21514 * 14 13 12 16 16 C 1.53006 * 110.32123 * 217.32103 * 14 13 12 17 17 C 1.54255 * 105.14732 * 336.26632 * 14 13 12 18 18 C 1.52998 * 110.32283 * 118.84810 * 17 14 13 19 19 C 1.53002 * 110.32648 * 241.05188 * 17 14 13 20 20 O 1.42901 * 109.47618 * 180.02562 * 19 17 14 21 21 C 1.48556 * 110.99878 * 300.00027 * 12 2 1 22 22 H 1.09008 * 109.47274 * 59.99482 * 1 2 3 23 23 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47260 * 299.99974 * 1 2 3 25 25 H 0.96997 * 119.99963 * 180.02562 * 7 6 4 26 26 H 1.09003 * 110.39121 * 40.24456 * 13 12 2 27 27 H 1.09002 * 110.51066 * 277.74801 * 13 12 2 28 28 H 1.09001 * 109.47002 * 177.16887 * 16 14 13 29 29 H 1.08993 * 109.46955 * 297.17324 * 16 14 13 30 30 H 1.09000 * 109.47050 * 57.17153 * 16 14 13 31 31 H 1.09005 * 109.47235 * 59.99717 * 18 17 14 32 32 H 1.09003 * 109.47720 * 179.97438 * 18 17 14 33 33 H 1.09001 * 109.47183 * 299.99934 * 18 17 14 34 34 H 1.09001 * 109.47319 * 300.00466 * 19 17 14 35 35 H 1.08997 * 109.46959 * 60.00415 * 19 17 14 36 36 H 0.96696 * 114.00218 * 180.02562 * 20 19 17 37 37 H 1.09001 * 110.41619 * 82.17734 * 21 12 2 38 38 H 1.08998 * 110.51168 * 319.78701 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1676 -1.5864 -4.8166 11 1 3.1472 -0.1857 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 3.5023 -0.6192 1.2896 14 6 3.8123 -0.8750 2.7802 15 1 4.0398 -1.9282 2.9442 16 6 4.9830 -0.0019 3.2369 17 6 2.5248 -0.4813 3.5331 18 6 1.9557 -1.6892 4.2801 19 6 2.8082 0.6628 4.5085 20 8 1.6050 1.0121 5.1957 21 6 1.5433 -0.0189 2.4348 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.7089 1.1615 -3.4844 26 1 3.8524 0.3695 0.9927 27 1 3.9612 -1.3884 0.6685 28 1 5.1574 -0.1561 4.3017 29 1 5.8786 -0.2742 2.6787 30 1 4.7466 1.0466 3.0555 31 1 2.6911 -2.0517 4.9984 32 1 1.0476 -1.3959 4.8069 33 1 1.7232 -2.4806 3.5675 34 1 3.5602 0.3462 5.2313 35 1 3.1761 1.5279 3.9568 36 1 1.7103 1.7328 5.8317 37 1 0.5284 -0.3365 2.6738 38 1 1.5847 1.0641 2.3195 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694723330.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = -76.732956 kcal Electronic energy + Delta-G solvation = -17002.045154 eV Core-core repulsion = 14457.148557 eV Total energy + Delta-G solvation = -2544.896597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89426 -37.66853 -36.11402 -34.01695 -32.18273 -30.72343 -28.15564 -27.27073 -25.84184 -25.58290 -22.46685 -21.39145 -19.37680 -18.41543 -18.27657 -17.03318 -16.39431 -15.90534 -15.73694 -15.28359 -14.75469 -14.28294 -14.13632 -13.82675 -13.78085 -13.42040 -13.04688 -12.92762 -12.84134 -12.63092 -12.59411 -12.44782 -12.15163 -12.03802 -11.59874 -11.46698 -11.26373 -11.17311 -10.92557 -10.66210 -10.55551 -9.09823 -8.13692 -6.26232 1.39388 1.40872 1.53421 2.40629 3.13757 3.28187 3.46952 3.68069 3.84168 4.10977 4.30272 4.38810 4.48033 4.54457 4.62956 4.64245 4.75601 4.78968 4.83582 4.90815 4.97366 5.01042 5.10684 5.11433 5.19010 5.28586 5.34418 5.40591 5.46767 5.55446 5.68893 5.71611 6.19712 6.33426 6.61365 6.87778 7.00449 7.43265 8.92927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.038637 B = 0.007455 C = 0.006858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.518551 B = 3754.798636 C = 4082.060799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.208 3.792 3 H -0.040 1.040 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.516 5.516 13 C 0.051 3.949 14 C -0.081 4.081 15 H 0.089 0.911 16 C -0.143 4.143 17 C -0.061 4.061 18 C -0.119 4.119 19 C 0.093 3.907 20 O -0.589 6.589 21 C 0.055 3.945 22 H 0.061 0.939 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.444 -0.937 14.579 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 H -0.022 1.022 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.190 4.190 7 N -0.562 5.562 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.240 5.240 13 C -0.078 4.078 14 C -0.100 4.100 15 H 0.108 0.892 16 C -0.201 4.201 17 C -0.061 4.061 18 C -0.176 4.176 19 C 0.015 3.985 20 O -0.397 6.397 21 C -0.074 4.074 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.243 0.757 37 H 0.079 0.921 38 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.925 -1.851 14.018 15.331 hybrid contribution 0.350 1.253 -1.016 1.650 sum 6.275 -0.599 13.002 14.449 Atomic orbital electron populations 1.21613 0.97567 0.99083 0.99477 1.19196 0.92595 0.90047 0.88086 1.02211 1.21378 1.31027 1.12173 0.90909 0.92616 1.25770 0.95348 0.95781 1.02059 1.70033 1.37877 1.24266 1.24055 0.85423 0.78163 0.78581 0.78963 1.19142 1.20470 1.20475 1.65405 1.06673 1.50153 1.01772 1.22985 0.89323 0.98789 0.96666 1.21989 0.94290 1.01262 0.92413 0.89221 1.21930 0.96861 0.98880 1.02392 1.21368 0.94759 0.96149 0.93843 1.21635 1.00943 0.95832 0.99220 1.22373 0.86500 0.95654 0.93925 1.86464 1.34891 1.58737 1.59567 1.22977 0.98883 0.94883 0.90636 0.92010 0.95074 0.95912 0.92880 0.96268 0.91843 0.89819 0.91881 0.93129 0.90965 0.92765 0.93531 0.90618 0.94043 0.75691 0.92113 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.31 8.82 71.98 0.64 -5.68 16 2 C 0.21 11.33 1.83 44.17 0.08 11.41 16 3 H -0.04 -2.40 7.98 -2.39 -0.02 -2.42 16 4 C -0.52 -29.75 8.16 25.60 0.21 -29.55 16 5 H 0.06 3.20 7.25 -2.91 -0.02 3.18 16 6 C 0.01 0.50 5.30 84.66 0.45 0.95 16 7 N -0.92 -54.85 11.32 21.45 0.24 -54.61 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.52 -23.68 5.19 -860.31 -4.46 -28.14 16 13 C 0.05 2.03 5.37 86.42 0.46 2.49 16 14 C -0.08 -2.34 3.30 -9.90 -0.03 -2.38 16 15 H 0.09 2.43 7.71 -2.39 -0.02 2.41 16 16 C -0.14 -3.17 7.93 71.98 0.57 -2.60 16 17 C -0.06 -1.80 0.83 -51.29 -0.04 -1.84 16 18 C -0.12 -3.24 8.09 71.98 0.58 -2.66 16 19 C 0.09 2.19 4.65 71.98 0.33 2.53 16 20 O -0.59 -14.01 12.71 -148.98 -1.89 -15.90 16 21 C 0.05 2.17 4.23 86.45 0.37 2.53 16 22 H 0.06 3.54 6.07 -2.38 -0.01 3.53 16 23 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.02 1.08 6.94 -2.39 -0.02 1.06 16 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 26 H 0.02 0.82 7.61 -2.39 -0.02 0.80 16 27 H 0.06 2.64 7.65 -2.39 -0.02 2.62 16 28 H 0.08 1.37 6.88 -2.39 -0.02 1.36 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.18 6.69 -2.39 -0.02 1.17 16 31 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 32 H 0.05 1.52 7.62 -2.39 -0.02 1.50 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.34 6.84 -2.39 -0.02 1.32 16 35 H 0.04 1.01 6.71 -2.39 -0.02 1.00 16 36 H 0.39 5.31 9.12 -74.06 -0.68 4.63 16 37 H 0.06 2.51 7.39 -2.39 -0.02 2.49 16 38 H 0.01 0.58 7.66 -2.39 -0.02 0.56 16 Total: -1.00 -66.80 289.60 -0.12 -66.91 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.35 Total: 9.67 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 3.62 Total: -24.79 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -4.22 Total: -82.75 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.89 Total: -15.90 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.80 -0.12 -66.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694723330.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.818 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds