Wall clock time and date at job start Mon Mar 30 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47203 * 2 1 4 4 C 1.50706 * 109.46831 * 240.00092 * 2 1 3 5 5 H 1.07998 * 119.99727 * 243.82850 * 4 2 1 6 6 C 1.37877 * 120.00029 * 63.82628 * 4 2 1 7 7 N 1.31506 * 119.99644 * 201.73296 * 6 4 2 8 8 Si 1.86797 * 120.00170 * 21.73750 * 6 4 2 9 9 H 1.48494 * 109.47288 * 95.11635 * 8 6 4 10 10 H 1.48492 * 109.47200 * 215.12014 * 8 6 4 11 11 H 1.48502 * 109.47085 * 335.12075 * 8 6 4 12 12 N 1.46901 * 109.47347 * 120.00221 * 2 1 3 13 13 C 1.48017 * 111.00227 * 64.40280 * 12 2 1 14 14 C 1.50981 * 113.13480 * 192.36527 * 13 12 2 15 15 C 1.54704 * 109.08123 * 92.04192 * 14 13 12 16 16 H 1.09007 * 109.21029 * 46.99285 * 15 14 13 17 17 C 1.53000 * 109.18051 * 166.34358 * 15 14 13 18 18 O 1.36619 * 110.79152 * 286.65870 * 15 14 13 19 19 C 1.43446 * 117.84042 * 61.04203 * 18 15 14 20 20 H 1.09002 * 109.84536 * 37.49238 * 19 18 15 21 21 C 1.52997 * 109.84492 * 158.40155 * 19 18 15 22 22 C 1.47396 * 110.99471 * 297.21969 * 12 2 1 23 23 H 1.09005 * 109.46727 * 304.74250 * 1 2 3 24 24 H 1.08997 * 109.47495 * 64.73738 * 1 2 3 25 25 H 1.08999 * 109.47085 * 184.74252 * 1 2 3 26 26 H 0.97011 * 120.00228 * 180.02562 * 7 6 4 27 27 H 1.09002 * 108.74908 * 71.42061 * 13 12 2 28 28 H 1.09003 * 108.65732 * 313.24021 * 13 12 2 29 29 H 1.09004 * 109.53089 * 332.16120 * 14 13 12 30 30 H 1.09002 * 109.60513 * 211.96637 * 14 13 12 31 31 H 1.08995 * 109.47107 * 181.28080 * 17 15 14 32 32 H 1.08998 * 109.46473 * 301.28048 * 17 15 14 33 33 H 1.09000 * 109.47035 * 61.27817 * 17 15 14 34 34 H 1.09006 * 109.47090 * 59.99163 * 21 19 18 35 35 H 1.09007 * 109.46972 * 299.99748 * 21 19 18 36 36 H 1.08990 * 109.47591 * 179.97438 * 21 19 18 37 37 H 1.09000 * 109.06678 * 324.36243 * 22 12 2 38 38 H 1.08999 * 109.06114 * 205.43497 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6012 -1.6232 -1.1326 6 6 1.7655 -0.1951 -2.4813 7 7 1.8067 -0.9777 -3.5373 8 14 1.3455 1.6146 -2.6757 9 1 2.5749 2.3742 -3.0171 10 1 0.3458 1.7769 -3.7617 11 1 0.7818 2.1315 -1.4028 12 7 2.0197 -0.6925 1.1994 13 6 1.6337 -2.1214 1.1817 14 6 1.8463 -2.8097 2.5086 15 6 0.5430 -2.7233 3.3377 16 1 -0.3020 -3.0008 2.7075 17 6 0.6320 -3.6943 4.5167 18 8 0.3531 -1.4563 3.8121 19 6 0.2139 -0.3966 2.8553 20 1 -0.3533 -0.7483 1.9935 21 6 -0.5025 0.7927 3.4980 22 6 1.6023 0.0133 2.4242 23 1 -0.3633 0.5857 0.8445 24 1 -0.3634 0.4386 -0.9293 25 1 -0.3633 -1.0241 0.0850 26 1 1.6194 -0.6152 -4.4174 27 1 2.2239 -2.6344 0.4223 28 1 0.5796 -2.1945 0.9140 29 1 2.6553 -2.3179 3.0488 30 1 2.1031 -3.8557 2.3410 31 1 -0.2933 -3.6539 5.0913 32 1 0.7836 -4.7068 4.1428 33 1 1.4692 -3.4139 5.1559 34 1 0.0777 1.1497 4.3490 35 1 -1.4907 0.4816 3.8370 36 1 -0.6046 1.5941 2.7664 37 1 1.6148 1.0872 2.2380 38 1 2.3058 -0.2161 3.2245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694923387.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:08 Heat of formation + Delta-G solvation = -53.160421 kcal Electronic energy + Delta-G solvation = -17396.784717 eV Core-core repulsion = 14852.910301 eV Total energy + Delta-G solvation = -2543.874416 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42114 -38.15329 -35.15053 -34.75466 -32.37756 -30.97889 -29.60395 -27.41918 -26.38176 -24.28991 -22.49335 -22.11069 -20.65194 -18.70604 -17.80579 -17.35997 -16.85423 -16.32696 -15.67451 -15.14314 -14.90564 -14.43160 -14.31189 -13.83488 -13.77226 -13.64961 -13.28554 -13.01056 -12.86257 -12.82988 -12.67914 -12.50364 -12.39662 -12.16750 -11.92609 -11.65877 -11.50990 -11.24217 -11.02698 -10.43780 -10.38368 -8.83264 -8.32043 -6.25362 1.32602 1.38345 1.46641 2.35237 2.68511 3.01008 3.17096 3.77381 3.90986 4.04412 4.16293 4.21892 4.33622 4.40964 4.49567 4.55200 4.61895 4.68592 4.76304 4.76873 4.81459 4.86796 4.97200 5.04652 5.08870 5.14244 5.20052 5.30478 5.33122 5.39195 5.51004 5.61457 6.06381 6.36116 6.68048 6.74761 6.79842 7.35804 8.84176 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036929 B = 0.008908 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.028558 B = 3142.350256 C = 3624.532294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.190 3.810 3 H 0.036 0.964 4 C -0.521 4.521 5 H 0.037 0.963 6 C 0.023 3.977 7 N -0.935 5.935 8 Si 0.925 3.075 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.235 1.235 12 N -0.546 5.546 13 C 0.070 3.930 14 C -0.150 4.150 15 C 0.096 3.904 16 H 0.031 0.969 17 C -0.134 4.134 18 O -0.386 6.386 19 C 0.051 3.949 20 H 0.061 0.939 21 C -0.137 4.137 22 C 0.034 3.966 23 H 0.062 0.938 24 H 0.038 0.962 25 H 0.041 0.959 26 H 0.265 0.735 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 0.849 15.428 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.082 3.918 3 H 0.054 0.946 4 C -0.558 4.558 5 H 0.055 0.945 6 C -0.175 4.175 7 N -0.574 5.574 8 Si 0.749 3.251 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.158 1.158 12 N -0.270 5.270 13 C -0.057 4.057 14 C -0.188 4.188 15 C 0.037 3.963 16 H 0.049 0.951 17 C -0.191 4.191 18 O -0.306 6.306 19 C -0.007 4.007 20 H 0.079 0.921 21 C -0.195 4.195 22 C -0.094 4.094 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.518 0.873 15.422 16.094 hybrid contribution -0.701 0.366 -1.378 1.588 sum -5.219 1.239 14.045 15.034 Atomic orbital electron populations 1.22815 0.99972 1.00063 1.00264 1.19551 0.90066 0.94201 0.88012 0.94608 1.21119 1.34674 1.09837 0.90210 0.94455 1.25673 0.94698 1.01754 0.95404 1.70162 1.50369 1.36860 0.99971 0.86108 0.78284 0.81520 0.79171 1.20287 1.21182 1.15764 1.62022 1.61120 1.01861 1.01991 1.21672 0.97922 0.88731 0.97408 1.22420 0.99643 1.01494 0.95282 1.21444 0.94527 0.83968 0.96361 0.95093 1.21770 1.03047 0.97684 0.96598 1.86315 1.92182 1.15605 1.36467 1.22996 0.97035 0.88748 0.91878 0.92115 1.21758 1.00583 0.95382 1.01761 1.22612 0.95300 0.99004 0.92519 0.91971 0.94335 0.94017 0.92569 0.93582 0.96101 0.90769 0.89336 0.91508 0.89696 0.91621 0.90720 0.91388 0.90375 0.90304 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.22 6.94 71.98 0.50 -6.72 16 2 C 0.19 8.85 1.83 44.17 0.08 8.93 16 3 H 0.04 1.68 6.40 -2.39 -0.02 1.67 16 4 C -0.52 -29.61 8.47 25.60 0.22 -29.39 16 5 H 0.04 2.38 6.55 -2.91 -0.02 2.36 16 6 C 0.02 1.35 5.23 84.66 0.44 1.79 16 7 N -0.93 -57.80 13.96 21.45 0.30 -57.50 16 8 Si 0.93 43.21 25.93 68.60 1.78 44.99 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.23 -9.90 5.86 99.48 0.58 -9.32 16 12 N -0.55 -22.74 4.82 -878.81 -4.23 -26.97 16 13 C 0.07 2.80 4.34 85.43 0.37 3.17 16 14 C -0.15 -4.66 5.02 30.52 0.15 -4.50 16 15 C 0.10 2.67 2.91 31.18 0.09 2.77 16 16 H 0.03 0.92 7.72 -2.38 -0.02 0.90 16 17 C -0.13 -2.77 9.48 71.98 0.68 -2.09 16 18 O -0.39 -11.47 9.20 -100.72 -0.93 -12.40 16 19 C 0.05 1.53 1.89 29.96 0.06 1.59 16 20 H 0.06 2.05 3.88 -2.39 -0.01 2.04 16 21 C -0.14 -3.19 9.17 71.98 0.66 -2.53 16 22 C 0.03 1.12 4.57 85.57 0.39 1.51 16 23 H 0.06 2.17 5.19 -2.38 -0.01 2.16 16 24 H 0.04 1.67 5.54 -2.39 -0.01 1.65 16 25 H 0.04 1.79 5.59 -2.39 -0.01 1.77 16 26 H 0.27 15.36 8.31 -92.70 -0.77 14.58 16 27 H 0.05 2.14 6.60 -2.39 -0.02 2.12 16 28 H 0.02 0.87 4.44 -2.39 -0.01 0.86 16 29 H 0.07 2.35 7.24 -2.39 -0.02 2.33 16 30 H 0.09 2.42 8.08 -2.39 -0.02 2.40 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.08 1.70 7.56 -2.39 -0.02 1.68 16 37 H 0.08 2.49 7.35 -2.39 -0.02 2.47 16 38 H 0.08 2.54 7.24 -2.39 -0.02 2.52 16 Total: -1.00 -64.16 272.24 1.47 -62.69 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.91 Total: 14.66 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 3.64 Total: -25.47 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -3.94 Total: -84.47 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.93 Total: -12.40 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.78 Total: 44.99 kcal Total: -64.16 1.47 -62.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694923387.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.530 kcal (2) G-P(sol) polarization free energy of solvation -64.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds