Wall clock time and date at job start Mon Mar 30 2020 04:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47534 * 2 1 4 4 C 1.52998 * 109.46959 * 239.99679 * 2 1 3 5 5 C 1.50700 * 109.47217 * 175.00079 * 4 2 1 6 6 H 1.08005 * 120.00208 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00220 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00303 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00145 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47184 * 89.99595 * 9 7 5 11 11 H 1.48503 * 109.47158 * 209.99932 * 9 7 5 12 12 H 1.48504 * 109.46983 * 329.99213 * 9 7 5 13 13 N 1.46898 * 109.47098 * 120.00271 * 2 1 3 14 14 C 1.46906 * 110.99888 * 274.99671 * 13 2 1 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.43848 * 305.70077 * 15 14 13 17 17 C 1.54893 * 110.48818 * 68.24806 * 15 14 13 18 18 C 1.55024 * 102.68501 * 156.51371 * 17 15 14 19 19 C 1.54259 * 104.28320 * 322.22990 * 18 17 15 20 20 C 1.53881 * 106.59602 * 23.51836 * 19 18 17 21 21 H 1.09000 * 110.02970 * 240.71187 * 20 19 18 22 22 O 1.42901 * 110.07227 * 119.30773 * 20 19 18 23 23 H 1.09002 * 109.47594 * 59.99753 * 1 2 3 24 24 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47371 * 299.99998 * 1 2 3 26 26 H 1.08997 * 109.47741 * 294.99917 * 4 2 1 27 27 H 1.09007 * 109.47097 * 55.00745 * 4 2 1 28 28 H 0.96998 * 120.00557 * 180.02562 * 8 7 5 29 29 H 1.00902 * 111.00533 * 151.04078 * 13 2 1 30 30 H 1.09000 * 109.47033 * 300.00113 * 14 13 2 31 31 H 1.09001 * 109.46544 * 60.00058 * 14 13 2 32 32 H 1.08999 * 110.75283 * 274.93147 * 17 15 14 33 33 H 1.09003 * 110.75687 * 38.29872 * 17 15 14 34 34 H 1.09006 * 110.52324 * 203.48344 * 18 17 15 35 35 H 1.09004 * 110.48076 * 80.95695 * 18 17 15 36 36 H 1.08998 * 110.03742 * 264.24001 * 19 18 17 37 37 H 1.09002 * 110.03521 * 142.80524 * 19 18 17 38 38 H 0.96706 * 113.99995 * 62.80792 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5418 -0.6150 -1.3127 6 1 4.0790 -0.0863 -0.5392 7 6 4.2302 -1.1928 -2.3583 8 7 3.5763 -1.8371 -3.3000 9 14 6.0920 -1.0616 -2.4366 10 1 6.6999 -2.2149 -1.7254 11 1 6.5295 -1.0687 -3.8557 12 1 6.5267 0.2031 -1.7911 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5950 -0.5333 3.5744 16 1 1.9869 -1.4192 3.7572 17 6 4.0819 -0.9253 3.3879 18 6 4.5761 -1.0903 4.8480 19 6 3.8553 0.0319 5.6229 20 6 2.5956 0.3862 4.8131 21 1 2.6326 1.4305 4.5031 22 8 1.4253 0.1502 5.5985 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.7516 -1.7716 -1.2056 27 1 1.6053 -0.2617 -2.1370 28 1 4.0606 -2.2440 -4.0354 29 1 2.9172 -1.1207 1.0287 30 1 2.7589 1.0461 2.1182 31 1 1.0870 0.6163 2.5525 32 1 4.1681 -1.8638 2.8403 33 1 4.6306 -0.1303 2.8829 34 1 5.6568 -0.9585 4.9028 35 1 4.2917 -2.0673 5.2388 36 1 4.5034 0.9044 5.7057 37 1 3.5744 -0.3205 6.6154 38 1 1.3674 0.6989 6.3927 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695776273.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:59 Heat of formation + Delta-G solvation = -104.418441 kcal Electronic energy + Delta-G solvation = -16274.312231 eV Core-core repulsion = 13728.215101 eV Total energy + Delta-G solvation = -2546.097130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08232 -38.04451 -36.00503 -34.78025 -32.75303 -29.43411 -29.15480 -28.54226 -25.36037 -24.11589 -21.72254 -21.20109 -20.61976 -18.51151 -18.07476 -16.94895 -16.51419 -16.35025 -16.15851 -15.65772 -14.78275 -14.26874 -14.17058 -13.73030 -13.65001 -13.45847 -13.27462 -13.13943 -12.95922 -12.61893 -12.36872 -12.26416 -12.12708 -12.00616 -11.57185 -11.44637 -11.34364 -11.17617 -10.98863 -10.79507 -10.57593 -9.18674 -8.19331 -6.30192 1.39453 1.40266 1.50575 2.40009 3.10385 3.23410 3.48742 3.66480 3.79232 4.02255 4.27458 4.35857 4.39707 4.47891 4.56056 4.60901 4.62458 4.70224 4.82651 4.84324 4.99387 5.00517 5.06261 5.18164 5.19914 5.25041 5.32503 5.34484 5.45342 5.48956 5.56612 5.83441 6.20574 6.42042 6.66905 6.84577 6.97800 7.38523 8.92462 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025881 B = 0.007060 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.607438 B = 3965.270618 C = 4868.199641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.094 3.906 3 H 0.024 0.976 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.265 1.265 13 N -0.686 5.686 14 C 0.072 3.928 15 C -0.080 4.080 16 H 0.072 0.928 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.149 4.149 20 C 0.106 3.894 21 H 0.064 0.936 22 O -0.582 6.582 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.058 0.942 26 H -0.004 1.004 27 H -0.005 1.005 28 H 0.263 0.737 29 H 0.344 0.656 30 H 0.022 0.978 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.858 5.369 17.844 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.016 4.016 3 H 0.042 0.958 4 C -0.011 4.011 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.571 5.571 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.189 1.189 13 N -0.319 5.319 14 C -0.057 4.057 15 C -0.099 4.099 16 H 0.091 0.909 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.186 4.186 20 C 0.047 3.953 21 H 0.082 0.918 22 O -0.390 6.390 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.015 0.985 27 H 0.014 0.986 28 H 0.072 0.928 29 H 0.164 0.836 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.140 4.609 17.383 17.985 hybrid contribution 1.601 0.744 -0.511 1.838 sum 1.741 5.353 16.872 17.786 Atomic orbital electron populations 1.21709 0.94658 1.01361 1.00831 1.21439 0.95066 0.94802 0.90276 0.95805 1.19145 0.95041 0.94673 0.92191 1.21493 0.93120 1.34199 1.08320 0.92457 1.25907 1.03442 0.94784 0.95280 1.70099 1.37590 1.36663 1.12727 0.85515 0.79698 0.78912 0.77332 1.19665 1.20984 1.18889 1.60584 1.34065 1.32819 1.04466 1.21989 0.99764 0.93505 0.90477 1.21897 0.96758 0.98583 0.92618 0.90913 1.22575 0.94428 1.01432 0.97854 1.22302 1.00406 0.99022 0.93831 1.22845 0.96689 0.99526 0.99561 1.22453 0.84733 0.97823 0.90298 0.91850 1.86540 1.43855 1.67369 1.41237 0.92736 0.93306 0.92296 0.98522 0.98621 0.92816 0.83642 0.95996 0.91625 0.91926 0.91777 0.90458 0.91536 0.89992 0.89832 0.75777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.41 71.98 0.68 -4.08 16 2 C 0.09 4.06 2.59 44.91 0.12 4.18 16 3 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 4 C 0.03 1.44 4.57 29.85 0.14 1.57 16 5 C -0.53 -29.84 8.12 25.60 0.21 -29.63 16 6 H 0.06 3.07 7.49 -2.91 -0.02 3.05 16 7 C 0.00 0.23 5.46 84.65 0.46 0.69 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 9 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 N -0.69 -27.40 6.31 -491.58 -3.10 -30.50 16 14 C 0.07 2.36 4.82 86.30 0.42 2.77 16 15 C -0.08 -2.26 2.83 -9.72 -0.03 -2.28 16 16 H 0.07 2.35 8.08 -2.39 -0.02 2.33 16 17 C -0.13 -3.35 5.63 31.93 0.18 -3.17 16 18 C -0.12 -2.43 6.83 31.71 0.22 -2.21 16 19 C -0.15 -2.61 6.61 31.32 0.21 -2.41 16 20 C 0.11 2.33 3.83 31.32 0.12 2.45 16 21 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 22 O -0.58 -12.74 13.22 -148.98 -1.97 -14.71 16 23 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 26 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 28 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.34 14.81 6.40 -89.69 -0.57 14.24 16 30 H 0.02 0.72 7.97 -2.39 -0.02 0.70 16 31 H 0.07 2.12 7.44 -2.39 -0.02 2.10 16 32 H 0.06 1.84 8.02 -2.39 -0.02 1.83 16 33 H 0.06 1.76 8.00 -2.39 -0.02 1.74 16 34 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.27 7.96 -2.39 -0.02 1.25 16 38 H 0.39 4.63 9.11 -74.05 -0.67 3.95 16 Total: -1.00 -64.85 303.24 -0.27 -65.12 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.22 Total: 22.62 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 2.71 Total: -32.11 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -2.82 Total: -86.89 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -1.97 Total: -14.71 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.85 -0.27 -65.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695776273.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.294 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds