Wall clock time and date at job start Mon Mar 30 2020 03:25:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09004 * 109.47194 * 2 1
4 4 C 1.52996 * 109.47289 * 239.99660 * 2 1 3
5 5 C 1.50703 * 109.47294 * 175.00142 * 4 2 1
6 6 H 1.08009 * 119.99632 * 0.02562 * 5 4 2
7 7 C 1.37875 * 120.00408 * 180.02562 * 5 4 2
8 8 N 1.31515 * 119.99811 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00235 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47286 * 90.00008 * 9 7 5
11 11 H 1.48499 * 109.47049 * 209.99972 * 9 7 5
12 12 H 1.48503 * 109.47034 * 329.99539 * 9 7 5
13 13 N 1.46905 * 109.46937 * 119.99496 * 2 1 3
14 14 C 1.46893 * 111.00327 * 275.00225 * 13 2 1
15 15 C 1.52999 * 109.47370 * 180.02562 * 14 13 2
16 16 H 1.09009 * 110.53679 * 303.83794 * 15 14 13
17 17 C 1.54810 * 110.48952 * 66.45015 * 15 14 13
18 18 C 1.54999 * 102.12305 * 139.57569 * 17 15 14
19 19 O 1.44374 * 103.49012 * 322.96443 * 18 17 15
20 20 C 1.43742 * 106.98116 * 40.05982 * 19 18 17
21 21 H 1.08995 * 109.87757 * 92.90925 * 20 19 18
22 22 C 1.53002 * 109.87977 * 213.91588 * 20 19 18
23 23 H 1.08997 * 109.47450 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47194 * 300.00551 * 1 2 3
25 25 H 1.09004 * 109.46729 * 60.00227 * 1 2 3
26 26 H 1.08997 * 109.47124 * 295.00053 * 4 2 1
27 27 H 1.09004 * 109.47050 * 55.00421 * 4 2 1
28 28 H 0.96994 * 120.00126 * 179.97438 * 8 7 5
29 29 H 1.00901 * 110.99496 * 38.96081 * 13 2 1
30 30 H 1.09000 * 109.47296 * 59.99741 * 14 13 2
31 31 H 1.09005 * 109.47206 * 300.00025 * 14 13 2
32 32 H 1.09002 * 110.90720 * 21.36162 * 17 15 14
33 33 H 1.08997 * 110.90646 * 257.79186 * 17 15 14
34 34 H 1.08999 * 110.61326 * 81.46056 * 18 17 15
35 35 H 1.08997 * 110.61685 * 204.45650 * 18 17 15
36 36 H 1.09005 * 109.47072 * 58.54410 * 22 20 19
37 37 H 1.08994 * 109.47025 * 178.54220 * 22 20 19
38 38 H 1.09003 * 109.46831 * 298.54127 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 3.5419 -0.6150 -1.3126
6 1 4.0790 -0.0862 -0.5390
7 6 4.2304 -1.1927 -2.3581
8 7 3.5765 -1.8371 -3.2998
9 14 6.0922 -1.0615 -2.4364
10 1 6.7000 -2.2148 -1.7253
11 1 6.5297 -1.0686 -3.8554
12 1 6.5268 0.2032 -1.7907
13 7 2.0196 -0.6924 1.1995
14 6 2.0824 0.2226 2.3469
15 6 2.5961 -0.5327 3.5743
16 1 1.9700 -1.4014 3.7784
17 6 4.0690 -0.9628 3.3686
18 6 4.6846 -0.6940 4.7655
19 8 4.0200 0.5117 5.2001
20 6 2.6435 0.3993 4.8018
21 1 2.0563 -0.0282 5.6145
22 6 2.0942 1.7788 4.4329
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8901
26 1 1.7517 -1.7715 -1.2054
27 1 1.6054 -0.2618 -2.1369
28 1 4.0608 -2.2432 -4.0356
29 1 1.4495 -1.4979 1.4101
30 1 1.0870 0.6164 2.5525
31 1 2.7588 1.0463 2.1183
32 1 4.5505 -0.3496 2.6068
33 1 4.1332 -2.0202 3.1121
34 1 4.4680 -1.5181 5.4453
35 1 5.7597 -0.5327 4.6865
36 1 2.6908 2.2034 3.6255
37 1 1.0585 1.6824 4.1074
38 1 2.1421 2.4335 5.3032
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695777919.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:42
Heat of formation + Delta-G solvation = -62.227204 kcal
Electronic energy + Delta-G solvation = -16457.813505 eV
Core-core repulsion = 13913.545924 eV
Total energy + Delta-G solvation = -2544.267581 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.68566 -36.68415 -33.60915 -32.25719 -31.33566 -29.53129 -27.23218 -25.93660
-24.02356 -22.76967 -21.94907 -19.95287 -19.16903 -16.54549 -16.18198 -15.62691
-15.21206 -14.85286 -14.45928 -14.14509 -13.77241 -13.10396 -12.66172 -12.43603
-12.29928 -12.05494 -11.75960 -11.72082 -11.43261 -11.14193 -10.97176 -10.76821
-10.71841 -10.55411 -10.40633 -10.25764 -10.01442 -9.56187 -9.22757 -8.94952
-8.23220 -7.51504 -5.85586 -3.82897 3.40572 3.46370 3.50205 3.95823
4.52586 4.58516 4.82088 4.89663 5.19669 5.24135 5.31722 5.44904
5.52038 5.59373 5.61584 5.71285 5.75920 5.83567 5.91151 5.92838
6.02324 6.06170 6.17391 6.22576 6.40276 6.47482 6.50964 6.64445
7.01918 7.05309 7.59116 7.71799 8.05147 8.09370 8.20486 8.63141
9.22423 9.78190 11.26660
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.024414 B = 0.007577 C = 0.006158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1146.596494 B = 3694.313690 C = 4545.649754
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.090 3.910
3 H 0.063 0.937
4 C 0.033 3.967
5 C -0.486 4.486
6 H 0.058 0.942
7 C 0.049 3.951
8 N -0.905 5.905
9 Si 0.889 3.111
10 H -0.283 1.283
11 H -0.290 1.290
12 H -0.276 1.276
13 N -0.663 5.663
14 C 0.069 3.931
15 C -0.115 4.115
16 H 0.077 0.923
17 C -0.134 4.134
18 C 0.042 3.958
19 O -0.379 6.379
20 C 0.078 3.922
21 H 0.062 0.938
22 C -0.153 4.153
23 H 0.050 0.950
24 H 0.036 0.964
25 H 0.056 0.944
26 H 0.016 0.984
27 H 0.016 0.984
28 H 0.257 0.743
29 H 0.329 0.671
30 H 0.022 0.978
31 H 0.073 0.927
32 H 0.086 0.914
33 H 0.081 0.919
34 H 0.054 0.946
35 H 0.089 0.911
36 H 0.068 0.932
37 H 0.069 0.931
38 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.563 3.032 14.649 15.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.020 4.020
3 H 0.081 0.919
4 C -0.004 4.004
5 C -0.524 4.524
6 H 0.076 0.924
7 C -0.150 4.150
8 N -0.546 5.546
9 Si 0.717 3.283
10 H -0.209 1.209
11 H -0.216 1.216
12 H -0.201 1.201
13 N -0.293 5.293
14 C -0.061 4.061
15 C -0.134 4.134
16 H 0.095 0.905
17 C -0.172 4.172
18 C -0.034 4.034
19 O -0.299 6.299
20 C 0.020 3.980
21 H 0.080 0.920
22 C -0.211 4.211
23 H 0.069 0.931
24 H 0.055 0.945
25 H 0.075 0.925
26 H 0.034 0.966
27 H 0.034 0.966
28 H 0.066 0.934
29 H 0.146 0.854
30 H 0.040 0.960
31 H 0.091 0.909
32 H 0.105 0.895
33 H 0.099 0.901
34 H 0.072 0.928
35 H 0.107 0.893
36 H 0.087 0.913
37 H 0.088 0.912
38 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -2.768 3.212 14.428 15.038
hybrid contribution -0.052 -0.195 -0.027 0.204
sum -2.820 3.016 14.401 14.981
Atomic orbital electron populations
1.22553 0.99640 1.01121 1.00541 1.21778 0.89777 0.98117 0.92303
0.91892 1.19111 0.96225 0.95347 0.89753 1.21144 0.91904 1.32712
1.06665 0.92410 1.25006 0.97925 0.96004 0.96070 1.69963 1.35132
1.37126 1.12398 0.86647 0.86561 0.78284 0.76758 1.20933 1.21638
1.20095 1.60522 1.57647 1.08568 1.02578 1.22122 0.98303 0.95711
0.89921 1.22557 0.98007 0.98115 0.94732 0.90501 1.23044 0.94193
1.03140 0.96796 1.23610 0.97831 0.87181 0.94823 1.88847 1.21217
1.39793 1.80004 1.22718 0.83785 0.96343 0.95199 0.92020 1.22012
1.01022 0.95944 1.02081 0.93088 0.94494 0.92529 0.96571 0.96557
0.93381 0.85421 0.95978 0.90894 0.89515 0.90066 0.92751 0.89263
0.91317 0.91215 0.92544
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.99 9.16 37.16 0.34 -2.65 16
2 C 0.09 1.79 2.53 -67.71 -0.17 1.62 16
3 H 0.06 1.30 7.80 -51.93 -0.40 0.89 16
4 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16
5 C -0.49 -13.69 8.84 -34.44 -0.30 -13.99 16
6 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16
7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16
8 N -0.91 -27.57 13.29 55.43 0.74 -26.83 16
9 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16
10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
13 N -0.66 -11.96 5.77 -106.73 -0.62 -12.58 16
14 C 0.07 1.03 3.60 -3.83 -0.01 1.02 16
15 C -0.11 -1.52 3.24 -89.04 -0.29 -1.81 16
16 H 0.08 0.95 8.14 -51.92 -0.42 0.52 16
17 C -0.13 -1.90 6.52 -24.72 -0.16 -2.06 16
18 C 0.04 0.53 7.72 38.21 0.29 0.82 16
19 O -0.38 -5.43 11.18 -35.23 -0.39 -5.83 16
20 C 0.08 0.97 4.05 -26.10 -0.11 0.87 16
21 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
22 C -0.15 -1.77 8.40 37.16 0.31 -1.45 16
23 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16
24 H 0.04 0.53 7.45 -51.93 -0.39 0.15 16
25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
29 H 0.33 5.55 8.47 -39.29 -0.33 5.22 16
30 H 0.02 0.31 5.97 -51.93 -0.31 0.00 16
31 H 0.07 1.19 6.76 -51.93 -0.35 0.84 16
32 H 0.09 1.43 7.83 -51.93 -0.41 1.02 16
33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
36 H 0.07 0.86 6.72 -51.93 -0.35 0.51 16
37 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16
38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
LS Contribution 300.60 15.07 4.53 4.53
Total: -1.00 -30.42 300.60 -7.75 -38.17
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: -6.67 Total: 0.94 kcal
Atomic # 6 Polarization: -15.28 SS G_CDS: -0.32 Total: -15.61 kcal
Atomic # 7 Polarization: -39.53 SS G_CDS: 0.12 Total: -39.41 kcal
Atomic # 8 Polarization: -5.43 SS G_CDS: -0.39 Total: -5.83 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -30.42 -7.75 -38.17 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695777919.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.054 kcal
(2) G-P(sol) polarization free energy of solvation -30.418 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.472 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds