Wall clock time and date at job start Mon Mar 30 2020 03:25:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09004 * 109.47194 * 2 1
4 4 C 1.52996 * 109.47289 * 239.99660 * 2 1 3
5 5 C 1.50703 * 109.47294 * 175.00142 * 4 2 1
6 6 H 1.08009 * 119.99632 * 0.02562 * 5 4 2
7 7 C 1.37875 * 120.00408 * 180.02562 * 5 4 2
8 8 N 1.31515 * 119.99811 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00235 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47286 * 90.00008 * 9 7 5
11 11 H 1.48499 * 109.47049 * 209.99972 * 9 7 5
12 12 H 1.48503 * 109.47034 * 329.99539 * 9 7 5
13 13 N 1.46905 * 109.46937 * 119.99496 * 2 1 3
14 14 C 1.46893 * 111.00327 * 275.00225 * 13 2 1
15 15 C 1.52999 * 109.47370 * 180.02562 * 14 13 2
16 16 H 1.09009 * 110.53679 * 303.83794 * 15 14 13
17 17 C 1.54810 * 110.48952 * 66.45015 * 15 14 13
18 18 C 1.54999 * 102.12305 * 139.57569 * 17 15 14
19 19 O 1.44374 * 103.49012 * 322.96443 * 18 17 15
20 20 C 1.43742 * 106.98116 * 40.05982 * 19 18 17
21 21 H 1.08995 * 109.87757 * 92.90925 * 20 19 18
22 22 C 1.53002 * 109.87977 * 213.91588 * 20 19 18
23 23 H 1.08997 * 109.47450 * 180.02562 * 1 2 3
24 24 H 1.08997 * 109.47194 * 300.00551 * 1 2 3
25 25 H 1.09004 * 109.46729 * 60.00227 * 1 2 3
26 26 H 1.08997 * 109.47124 * 295.00053 * 4 2 1
27 27 H 1.09004 * 109.47050 * 55.00421 * 4 2 1
28 28 H 0.96994 * 120.00126 * 179.97438 * 8 7 5
29 29 H 1.00901 * 110.99496 * 38.96081 * 13 2 1
30 30 H 1.09000 * 109.47296 * 59.99741 * 14 13 2
31 31 H 1.09005 * 109.47206 * 300.00025 * 14 13 2
32 32 H 1.09002 * 110.90720 * 21.36162 * 17 15 14
33 33 H 1.08997 * 110.90646 * 257.79186 * 17 15 14
34 34 H 1.08999 * 110.61326 * 81.46056 * 18 17 15
35 35 H 1.08997 * 110.61685 * 204.45650 * 18 17 15
36 36 H 1.09005 * 109.47072 * 58.54410 * 22 20 19
37 37 H 1.08994 * 109.47025 * 178.54220 * 22 20 19
38 38 H 1.09003 * 109.46831 * 298.54127 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 6 3.5419 -0.6150 -1.3126
6 1 4.0790 -0.0862 -0.5390
7 6 4.2304 -1.1927 -2.3581
8 7 3.5765 -1.8371 -3.2998
9 14 6.0922 -1.0615 -2.4364
10 1 6.7000 -2.2148 -1.7253
11 1 6.5297 -1.0686 -3.8554
12 1 6.5268 0.2032 -1.7907
13 7 2.0196 -0.6924 1.1995
14 6 2.0824 0.2226 2.3469
15 6 2.5961 -0.5327 3.5743
16 1 1.9700 -1.4014 3.7784
17 6 4.0690 -0.9628 3.3686
18 6 4.6846 -0.6940 4.7655
19 8 4.0200 0.5117 5.2001
20 6 2.6435 0.3993 4.8018
21 1 2.0563 -0.0282 5.6145
22 6 2.0942 1.7788 4.4329
23 1 -0.3634 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8899
25 1 -0.3633 0.5138 -0.8901
26 1 1.7517 -1.7715 -1.2054
27 1 1.6054 -0.2618 -2.1369
28 1 4.0608 -2.2432 -4.0356
29 1 1.4495 -1.4979 1.4101
30 1 1.0870 0.6164 2.5525
31 1 2.7588 1.0463 2.1183
32 1 4.5505 -0.3496 2.6068
33 1 4.1332 -2.0202 3.1121
34 1 4.4680 -1.5181 5.4453
35 1 5.7597 -0.5327 4.6865
36 1 2.6908 2.2034 3.6255
37 1 1.0585 1.6824 4.1074
38 1 2.1421 2.4335 5.3032
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695777919.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:42
Heat of formation + Delta-G solvation = -82.493709 kcal
Electronic energy + Delta-G solvation = -16458.692326 eV
Core-core repulsion = 13913.545924 eV
Total energy + Delta-G solvation = -2545.146402 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.73960 -38.17025 -35.19234 -34.05490 -32.34697 -31.01698 -29.08264 -26.99080
-25.41726 -24.58858 -22.98800 -21.50169 -20.38842 -18.36060 -17.60332 -16.74009
-16.53635 -16.22968 -16.12439 -15.50160 -15.17887 -14.42285 -14.13378 -13.94491
-13.50443 -13.37668 -13.20983 -13.12684 -12.90900 -12.70818 -12.48955 -12.37947
-12.16234 -11.93671 -11.77577 -11.62798 -11.45507 -11.08820 -11.05799 -10.54063
-10.47661 -8.92827 -8.09123 -6.13489 1.40987 1.41774 1.52393 2.47326
2.97832 3.21863 3.34251 3.76159 3.83035 4.10046 4.20056 4.26962
4.32860 4.43849 4.48074 4.58024 4.61147 4.66233 4.73626 4.79115
4.88151 4.96135 5.00805 5.15794 5.21870 5.25262 5.30053 5.32183
5.38464 5.52838 5.70378 5.91457 6.03522 6.35582 6.52206 6.78842
7.00824 7.51956 9.03094
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.024414 B = 0.007577 C = 0.006158
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1146.596494 B = 3694.313690 C = 4545.649754
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.100 3.900
3 H 0.054 0.946
4 C 0.037 3.963
5 C -0.495 4.495
6 H 0.054 0.946
7 C -0.007 4.007
8 N -0.941 5.941
9 Si 0.955 3.045
10 H -0.276 1.276
11 H -0.286 1.286
12 H -0.268 1.268
13 N -0.680 5.680
14 C 0.076 3.924
15 C -0.110 4.110
16 H 0.093 0.907
17 C -0.137 4.137
18 C 0.046 3.954
19 O -0.399 6.399
20 C 0.077 3.923
21 H 0.082 0.918
22 C -0.153 4.153
23 H 0.053 0.947
24 H 0.066 0.934
25 H 0.053 0.947
26 H -0.009 1.009
27 H -0.010 1.010
28 H 0.258 0.742
29 H 0.336 0.664
30 H 0.044 0.956
31 H 0.054 0.946
32 H 0.055 0.945
33 H 0.079 0.921
34 H 0.075 0.925
35 H 0.095 0.905
36 H 0.051 0.949
37 H 0.084 0.916
38 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.731 3.263 16.497 17.226
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.010 4.010
3 H 0.072 0.928
4 C 0.000 4.000
5 C -0.534 4.534
6 H 0.072 0.928
7 C -0.202 4.202
8 N -0.584 5.584
9 Si 0.781 3.219
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.193 1.193
13 N -0.311 5.311
14 C -0.053 4.053
15 C -0.129 4.129
16 H 0.111 0.889
17 C -0.175 4.175
18 C -0.031 4.031
19 O -0.319 6.319
20 C 0.019 3.981
21 H 0.100 0.900
22 C -0.210 4.210
23 H 0.072 0.928
24 H 0.085 0.915
25 H 0.073 0.927
26 H 0.009 0.991
27 H 0.008 0.992
28 H 0.067 0.933
29 H 0.154 0.846
30 H 0.062 0.938
31 H 0.072 0.928
32 H 0.074 0.926
33 H 0.097 0.903
34 H 0.094 0.906
35 H 0.113 0.887
36 H 0.070 0.930
37 H 0.103 0.897
38 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -2.940 3.449 16.296 16.914
hybrid contribution -0.009 -0.268 -0.599 0.656
sum -2.949 3.181 15.697 16.285
Atomic orbital electron populations
1.22404 0.96694 1.01787 1.01891 1.21418 0.92061 0.96639 0.90852
0.92772 1.19002 0.95038 0.94220 0.91759 1.21472 0.93443 1.32117
1.06345 0.92755 1.25847 1.02771 0.95796 0.95826 1.70090 1.37009
1.38184 1.13091 0.85602 0.80836 0.78591 0.76899 1.20235 1.21178
1.19296 1.60326 1.58187 1.09501 1.03087 1.22073 0.99061 0.94789
0.89336 1.22543 0.97378 0.98703 0.94318 0.88905 1.22990 0.95068
1.02334 0.97106 1.23670 0.98043 0.87375 0.93972 1.88829 1.22242
1.40668 1.80180 1.22846 0.83343 0.96674 0.95219 0.89974 1.22020
1.01483 0.95575 1.01906 0.92773 0.91537 0.92746 0.99053 0.99178
0.93309 0.84579 0.93829 0.92756 0.92609 0.90254 0.90638 0.88707
0.92967 0.89710 0.91708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.34 9.16 71.98 0.66 -4.68 16
2 C 0.10 3.97 2.53 44.91 0.11 4.08 16
3 H 0.05 2.23 7.80 -2.38 -0.02 2.21 16
4 C 0.04 1.95 4.65 29.85 0.14 2.09 16
5 C -0.50 -28.42 8.84 25.60 0.23 -28.19 16
6 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16
7 C -0.01 -0.40 5.46 84.65 0.46 0.07 16
8 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16
9 Si 0.95 46.01 29.54 68.60 2.03 48.04 16
10 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16
11 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16
13 N -0.68 -23.99 5.77 -491.58 -2.84 -26.83 16
14 C 0.08 2.16 3.60 86.30 0.31 2.47 16
15 C -0.11 -2.70 3.24 -9.77 -0.03 -2.73 16
16 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16
17 C -0.14 -3.76 6.52 31.90 0.21 -3.55 16
18 C 0.05 1.06 7.72 72.67 0.56 1.62 16
19 O -0.40 -10.68 11.18 -148.98 -1.67 -12.34 16
20 C 0.08 1.73 4.05 31.00 0.13 1.85 16
21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
22 C -0.15 -3.16 8.40 71.98 0.60 -2.56 16
23 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16
24 H 0.07 1.72 7.45 -2.39 -0.02 1.70 16
25 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16
26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16
27 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
29 H 0.34 10.91 8.47 -89.69 -0.76 10.15 16
30 H 0.04 1.06 5.97 -2.39 -0.01 1.05 16
31 H 0.05 1.75 6.76 -2.38 -0.02 1.74 16
32 H 0.06 1.86 7.83 -2.39 -0.02 1.84 16
33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16
34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16
36 H 0.05 1.25 6.72 -2.38 -0.02 1.23 16
37 H 0.08 1.48 6.86 -2.39 -0.02 1.46 16
38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
Total: -1.00 -65.64 300.60 1.44 -64.19
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: 0.26 Total: 14.60 kcal
Atomic # 6 Polarization: -32.91 SS G_CDS: 3.38 Total: -29.53 kcal
Atomic # 7 Polarization: -82.41 SS G_CDS: -2.55 Total: -84.96 kcal
Atomic # 8 Polarization: -10.68 SS G_CDS: -1.67 Total: -12.34 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal
Total: -65.64 1.44 -64.19 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695777919.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.300 kcal
(2) G-P(sol) polarization free energy of solvation -65.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds