Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.52995 * 109.47647 * 240.00330 * 2 1 3 5 5 C 1.50700 * 109.47708 * 175.00086 * 4 2 1 6 6 H 1.08006 * 119.99370 * 359.97438 * 5 4 2 7 7 C 1.37867 * 120.00328 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47038 * 59.99717 * 9 7 5 11 11 H 1.48499 * 109.47425 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47277 * 299.99969 * 9 7 5 13 13 N 1.46902 * 109.47267 * 119.99842 * 2 1 3 14 14 C 1.46905 * 111.00040 * 275.00413 * 13 2 1 15 15 C 1.53002 * 109.46796 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.57342 * 305.16046 * 15 14 13 17 17 C 1.53179 * 109.51846 * 185.00042 * 15 14 13 18 18 C 1.53177 * 109.10692 * 183.16031 * 17 15 14 19 19 C 1.53089 * 109.16584 * 56.93603 * 18 17 15 20 20 O 1.42902 * 109.41513 * 302.39390 * 19 18 17 21 21 C 1.42905 * 114.09897 * 61.15433 * 20 19 18 22 22 H 1.08999 * 109.47351 * 60.00516 * 1 2 3 23 23 H 1.09002 * 109.46651 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47602 * 299.99422 * 1 2 3 25 25 H 1.09007 * 109.47067 * 294.99773 * 4 2 1 26 26 H 1.09003 * 109.47291 * 54.99382 * 4 2 1 27 27 H 0.96994 * 120.00598 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00326 * 151.04921 * 13 2 1 29 29 H 1.08996 * 109.46540 * 59.99905 * 14 13 2 30 30 H 1.08994 * 109.46985 * 299.99588 * 14 13 2 31 31 H 1.09002 * 109.54484 * 63.24827 * 17 15 14 32 32 H 1.08999 * 109.54222 * 303.06994 * 17 15 14 33 33 H 1.08999 * 109.51892 * 176.84392 * 18 17 15 34 34 H 1.09000 * 109.52369 * 297.02547 * 18 17 15 35 35 H 1.09006 * 109.47817 * 62.37062 * 19 18 17 36 36 H 1.09001 * 109.48474 * 182.39360 * 19 18 17 37 37 H 1.09002 * 109.47741 * 58.82940 * 21 20 19 38 38 H 1.09000 * 109.47633 * 178.85936 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5394 7 6 4.2305 -1.1933 -2.3577 8 7 3.5768 -1.8384 -3.2989 9 14 6.0922 -1.0609 -2.4367 10 1 6.6846 -1.6859 -1.2269 11 1 6.5873 -1.7609 -3.6491 12 1 6.4846 0.3701 -2.4971 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2227 2.3470 15 6 2.5950 -0.5332 3.5745 16 1 1.9719 -1.4101 3.7499 17 6 2.5431 0.3851 4.7995 18 6 3.1313 -0.3539 6.0054 19 6 4.5576 -0.8006 5.6743 20 8 4.5380 -1.6274 4.5089 21 6 4.0419 -0.9746 3.3385 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.7518 -1.7715 -1.2056 26 1 1.6054 -0.2617 -2.1370 27 1 4.0612 -2.2458 -4.0339 28 1 2.9173 -1.1204 1.0288 29 1 1.0870 0.6162 2.5525 30 1 2.7588 1.0462 2.1183 31 1 1.5083 0.6570 5.0077 32 1 3.1247 1.2861 4.6047 33 1 3.1492 0.3126 6.8677 34 1 2.5193 -1.2271 6.2315 35 1 5.1789 0.0755 5.4879 36 1 4.9662 -1.3640 6.5132 37 1 4.6564 -0.1008 3.1216 38 1 4.0788 -1.6637 2.4948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = -76.770420 kcal Electronic energy + Delta-G solvation = -16344.955543 eV Core-core repulsion = 13800.057321 eV Total energy + Delta-G solvation = -2544.898222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38580 -36.70129 -34.12521 -32.71660 -31.78359 -29.07735 -27.39547 -25.05654 -24.90260 -23.02006 -21.44760 -20.01180 -19.29424 -16.38301 -16.15017 -16.14056 -15.07422 -14.74606 -14.69870 -14.35465 -13.99875 -13.17174 -13.04274 -12.67388 -12.57922 -11.85499 -11.73593 -11.48125 -11.31522 -11.22308 -11.09242 -10.94050 -10.72221 -10.56698 -10.30590 -10.18508 -10.13136 -9.33430 -9.21357 -9.07153 -8.39412 -7.65081 -6.02707 -4.06296 3.31111 3.36276 3.37967 3.97114 4.43025 4.63785 4.80277 4.84583 4.98698 5.14097 5.27990 5.37557 5.46384 5.52713 5.69971 5.71745 5.80423 5.83506 5.92823 5.97731 6.05631 6.20331 6.22949 6.23782 6.37048 6.46963 6.57216 6.93738 6.95460 7.29379 7.52577 7.63215 7.96546 8.06457 8.26790 8.37073 8.99565 9.58012 11.08111 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.007287 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.572966 B = 3841.523107 C = 4789.436662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.525 4.525 6 H 0.050 0.950 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.684 5.684 14 C 0.066 3.934 15 C -0.119 4.119 16 H 0.086 0.914 17 C -0.117 4.117 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.382 6.382 21 C 0.062 3.938 22 H 0.047 0.953 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.262 0.738 28 H 0.353 0.647 29 H 0.065 0.935 30 H 0.023 0.977 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 4.164 15.569 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.564 4.564 6 H 0.068 0.932 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.716 3.284 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.204 1.204 13 N -0.319 5.319 14 C -0.064 4.064 15 C -0.138 4.138 16 H 0.105 0.895 17 C -0.155 4.155 18 C -0.192 4.192 19 C -0.019 4.019 20 O -0.300 6.300 21 C -0.015 4.015 22 H 0.066 0.934 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.175 0.825 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.807 3.619 15.546 16.064 hybrid contribution 1.696 0.969 -0.374 1.989 sum -0.111 4.588 15.172 15.851 Atomic orbital electron populations 1.21788 0.96743 1.01329 0.99406 1.21615 0.93366 0.95833 0.91456 0.95379 1.19282 0.95386 0.96234 0.90822 1.21118 0.92219 1.34643 1.08396 0.93164 1.24977 0.98203 0.95143 0.95680 1.69944 1.35614 1.35393 1.11945 0.86720 0.85944 0.78151 0.77586 1.20076 1.21215 1.20401 1.60604 1.34659 1.32148 1.04470 1.21899 0.99634 0.93971 0.90855 1.21802 0.97650 0.99586 0.94767 0.89525 1.21606 1.01272 0.98167 0.94414 1.22173 0.97718 1.00973 0.98318 1.22544 0.95657 0.94993 0.88669 1.87951 1.84931 1.39221 1.17938 1.22739 0.92890 0.98033 0.87800 0.93358 0.92628 0.94569 0.95551 0.96062 0.92860 0.82538 0.91639 0.95919 0.91524 0.92052 0.91262 0.91070 0.93536 0.89318 0.93481 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.41 37.16 0.35 -2.10 16 2 C 0.09 1.81 2.59 -67.72 -0.18 1.63 16 3 H 0.03 0.60 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.51 4.57 -27.89 -0.13 0.39 16 5 C -0.53 -14.40 8.12 -34.44 -0.28 -14.68 16 6 H 0.05 1.33 7.49 -52.48 -0.39 0.94 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.68 -13.12 6.31 -106.73 -0.67 -13.79 16 14 C 0.07 1.05 4.95 -3.82 -0.02 1.03 16 15 C -0.12 -1.66 2.60 -90.47 -0.24 -1.89 16 16 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 17 C -0.12 -1.32 5.31 -26.55 -0.14 -1.46 16 18 C -0.15 -1.57 6.14 -26.59 -0.16 -1.73 16 19 C 0.06 0.66 6.84 37.20 0.25 0.91 16 20 O -0.38 -5.72 10.77 -35.23 -0.38 -6.10 16 21 C 0.06 0.93 5.84 37.21 0.22 1.15 16 22 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 25 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.35 7.31 5.54 -39.29 -0.22 7.09 16 29 H 0.07 0.99 7.44 -51.93 -0.39 0.60 16 30 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.10 1.70 6.81 -51.93 -0.35 1.34 16 LS Contribution 299.66 15.07 4.52 4.52 Total: -1.00 -29.16 299.66 -8.01 -37.17 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.77 Total: 2.63 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.42 Total: -15.10 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.06 Total: -39.53 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.38 Total: -6.10 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.16 -8.01 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.599 kcal (2) G-P(sol) polarization free energy of solvation -29.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds