Wall clock time and date at job start Mon Mar 30 2020 04:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47074 * 2 1 4 4 C 1.52995 * 109.47647 * 240.00330 * 2 1 3 5 5 C 1.50700 * 109.47708 * 175.00086 * 4 2 1 6 6 H 1.08006 * 119.99370 * 359.97438 * 5 4 2 7 7 C 1.37867 * 120.00328 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00373 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00131 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47038 * 59.99717 * 9 7 5 11 11 H 1.48499 * 109.47425 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47277 * 299.99969 * 9 7 5 13 13 N 1.46902 * 109.47267 * 119.99842 * 2 1 3 14 14 C 1.46905 * 111.00040 * 275.00413 * 13 2 1 15 15 C 1.53002 * 109.46796 * 179.97438 * 14 13 2 16 16 H 1.08997 * 109.57342 * 305.16046 * 15 14 13 17 17 C 1.53179 * 109.51846 * 185.00042 * 15 14 13 18 18 C 1.53177 * 109.10692 * 183.16031 * 17 15 14 19 19 C 1.53089 * 109.16584 * 56.93603 * 18 17 15 20 20 O 1.42902 * 109.41513 * 302.39390 * 19 18 17 21 21 C 1.42905 * 114.09897 * 61.15433 * 20 19 18 22 22 H 1.08999 * 109.47351 * 60.00516 * 1 2 3 23 23 H 1.09002 * 109.46651 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47602 * 299.99422 * 1 2 3 25 25 H 1.09007 * 109.47067 * 294.99773 * 4 2 1 26 26 H 1.09003 * 109.47291 * 54.99382 * 4 2 1 27 27 H 0.96994 * 120.00598 * 180.02562 * 8 7 5 28 28 H 1.00896 * 111.00326 * 151.04921 * 13 2 1 29 29 H 1.08996 * 109.46540 * 59.99905 * 14 13 2 30 30 H 1.08994 * 109.46985 * 299.99588 * 14 13 2 31 31 H 1.09002 * 109.54484 * 63.24827 * 17 15 14 32 32 H 1.08999 * 109.54222 * 303.06994 * 17 15 14 33 33 H 1.08999 * 109.51892 * 176.84392 * 18 17 15 34 34 H 1.09000 * 109.52369 * 297.02547 * 18 17 15 35 35 H 1.09006 * 109.47817 * 62.37062 * 19 18 17 36 36 H 1.09001 * 109.48474 * 182.39360 * 19 18 17 37 37 H 1.09002 * 109.47741 * 58.82940 * 21 20 19 38 38 H 1.09000 * 109.47633 * 178.85936 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5394 7 6 4.2305 -1.1933 -2.3577 8 7 3.5768 -1.8384 -3.2989 9 14 6.0922 -1.0609 -2.4367 10 1 6.6846 -1.6859 -1.2269 11 1 6.5873 -1.7609 -3.6491 12 1 6.4846 0.3701 -2.4971 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2227 2.3470 15 6 2.5950 -0.5332 3.5745 16 1 1.9719 -1.4101 3.7499 17 6 2.5431 0.3851 4.7995 18 6 3.1313 -0.3539 6.0054 19 6 4.5576 -0.8006 5.6743 20 8 4.5380 -1.6274 4.5089 21 6 4.0419 -0.9746 3.3385 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.7518 -1.7715 -1.2056 26 1 1.6054 -0.2617 -2.1370 27 1 4.0612 -2.2458 -4.0339 28 1 2.9173 -1.1204 1.0288 29 1 1.0870 0.6162 2.5525 30 1 2.7588 1.0462 2.1183 31 1 1.5083 0.6570 5.0077 32 1 3.1247 1.2861 4.6047 33 1 3.1492 0.3126 6.8677 34 1 2.5193 -1.2271 6.2315 35 1 5.1789 0.0755 5.4879 36 1 4.9662 -1.3640 6.5132 37 1 4.6564 -0.1008 3.1216 38 1 4.0788 -1.6637 2.4948 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695779076.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:43 Heat of formation + Delta-G solvation = -95.658885 kcal Electronic energy + Delta-G solvation = -16345.774609 eV Core-core repulsion = 13800.057321 eV Total energy + Delta-G solvation = -2545.717287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.45835 -38.24661 -35.52356 -34.46098 -33.06379 -30.50816 -29.27556 -26.35591 -25.92099 -24.92651 -22.56889 -21.28211 -20.77318 -18.51740 -17.38298 -17.19101 -16.61087 -16.29166 -16.06931 -15.66504 -15.13975 -14.73172 -14.29665 -14.04187 -13.61266 -13.51336 -13.46966 -13.16596 -12.85669 -12.59106 -12.54282 -12.41109 -12.10095 -12.05631 -11.90432 -11.57321 -11.21872 -11.14893 -10.95958 -10.57704 -10.37160 -9.19414 -8.19932 -6.30701 1.38853 1.40861 1.48319 2.39299 2.94993 3.11132 3.38416 3.81682 3.88596 3.99754 4.07046 4.27083 4.30836 4.41419 4.54539 4.57429 4.65917 4.72935 4.75830 4.78505 4.85685 4.96497 5.03717 5.09633 5.14438 5.20995 5.25470 5.33927 5.43555 5.49297 5.55966 5.83588 6.19912 6.26603 6.41705 6.63165 6.84275 7.38115 8.91523 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.007287 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.572966 B = 3841.523107 C = 4789.436662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.025 0.975 4 C 0.026 3.974 5 C -0.535 4.535 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.269 1.269 13 N -0.689 5.689 14 C 0.069 3.931 15 C -0.110 4.110 16 H 0.075 0.925 17 C -0.113 4.113 18 C -0.149 4.149 19 C 0.048 3.952 20 O -0.404 6.404 21 C 0.063 3.937 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.062 0.938 25 H -0.003 1.003 26 H -0.005 1.005 27 H 0.263 0.737 28 H 0.341 0.659 29 H 0.079 0.921 30 H 0.021 0.979 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.048 0.952 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 5.368 17.638 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.043 0.957 4 C -0.011 4.011 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.782 3.218 10 H -0.191 1.191 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.322 5.322 14 C -0.060 4.060 15 C -0.129 4.129 16 H 0.094 0.906 17 C -0.151 4.151 18 C -0.186 4.186 19 C -0.028 4.028 20 O -0.324 6.324 21 C -0.013 4.013 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.072 0.928 28 H 0.161 0.839 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.066 0.934 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.352 4.839 17.641 18.343 hybrid contribution 1.537 0.585 -0.983 1.916 sum 0.185 5.424 16.659 17.521 Atomic orbital electron populations 1.21704 0.94422 1.01402 1.00979 1.21440 0.95206 0.94790 0.90128 0.95691 1.19149 0.94871 0.94734 0.92354 1.21472 0.93249 1.34221 1.08375 0.92525 1.25871 1.03254 0.94793 0.95345 1.70080 1.37613 1.36529 1.12709 0.85624 0.79908 0.78506 0.77786 1.19133 1.20959 1.19441 1.60650 1.33957 1.32913 1.04690 1.21980 1.00501 0.93432 0.90101 1.21699 0.96407 0.99595 0.95236 0.90629 1.21607 1.02452 0.97707 0.93365 1.22152 0.96554 1.01257 0.98665 1.22842 0.96881 0.95292 0.87784 1.87916 1.85095 1.40537 1.18819 1.22610 0.93800 0.97326 0.87603 0.92900 0.93304 0.91859 0.98510 0.98631 0.92802 0.83854 0.90238 0.96074 0.90138 0.91456 0.88516 0.91408 0.92773 0.87491 0.93394 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.41 71.98 0.68 -3.81 16 2 C 0.09 3.92 2.59 44.91 0.12 4.04 16 3 H 0.03 1.06 7.80 -2.39 -0.02 1.04 16 4 C 0.03 1.39 4.57 29.85 0.14 1.52 16 5 C -0.54 -29.80 8.12 25.60 0.21 -29.59 16 6 H 0.06 3.01 7.49 -2.91 -0.02 2.99 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.52 13.29 21.44 0.28 -56.23 16 9 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.69 -26.30 6.31 -491.57 -3.10 -29.40 16 14 C 0.07 2.08 4.95 86.30 0.43 2.50 16 15 C -0.11 -2.92 2.60 -10.70 -0.03 -2.95 16 16 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.11 -2.24 5.31 30.71 0.16 -2.07 16 18 C -0.15 -2.56 6.14 30.68 0.19 -2.37 16 19 C 0.05 0.97 6.84 72.01 0.49 1.47 16 20 O -0.40 -11.73 10.77 -148.98 -1.60 -13.34 16 21 C 0.06 1.88 5.84 72.02 0.42 2.30 16 22 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 25 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 26 H 0.00 -0.27 8.14 -2.39 -0.02 -0.28 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.34 14.40 5.54 -89.70 -0.50 13.90 16 29 H 0.08 2.18 7.44 -2.39 -0.02 2.16 16 30 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.66 6.81 -2.39 -0.02 2.65 16 Total: -1.00 -63.09 299.66 1.38 -61.71 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: 0.51 Total: 19.21 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.26 Total: -28.16 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.82 Total: -85.63 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -1.60 Total: -13.34 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -63.09 1.38 -61.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779076.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.948 kcal (2) G-P(sol) polarization free energy of solvation -63.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds