Wall clock time and date at job start Mon Mar 30 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47220 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00376 * 2 1 3 5 5 C 1.50697 * 109.47397 * 185.00414 * 4 2 1 6 6 H 1.08011 * 120.00086 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00280 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00005 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47168 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47218 * 120.00071 * 9 7 5 12 12 H 1.48504 * 109.46756 * 239.99988 * 9 7 5 13 13 N 1.46898 * 109.47492 * 240.00307 * 2 1 3 14 14 C 1.46905 * 111.00192 * 84.99611 * 13 2 1 15 15 C 1.52998 * 109.47207 * 180.02562 * 14 13 2 16 16 H 1.08996 * 109.52483 * 305.12843 * 15 14 13 17 17 C 1.53180 * 109.52125 * 184.99884 * 15 14 13 18 18 C 1.53175 * 109.03606 * 183.05119 * 17 15 14 19 19 C 1.53092 * 109.16344 * 56.98567 * 18 17 15 20 20 O 1.42905 * 109.41215 * 302.38824 * 19 18 17 21 21 C 1.42905 * 114.09831 * 61.16158 * 20 19 18 22 22 H 1.08994 * 109.47260 * 299.99365 * 1 2 3 23 23 H 1.08999 * 109.47340 * 60.00262 * 1 2 3 24 24 H 1.09005 * 109.46986 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46715 * 304.99709 * 4 2 1 26 26 H 1.09001 * 109.47279 * 64.99682 * 4 2 1 27 27 H 0.97000 * 119.99799 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99887 * 321.04779 * 13 2 1 29 29 H 1.09001 * 109.46861 * 60.00632 * 14 13 2 30 30 H 1.08997 * 109.46903 * 300.00647 * 14 13 2 31 31 H 1.09005 * 109.54069 * 63.18711 * 17 15 14 32 32 H 1.08996 * 109.62096 * 302.96618 * 17 15 14 33 33 H 1.09004 * 109.52714 * 297.07587 * 18 17 15 34 34 H 1.08998 * 109.52443 * 176.88852 * 18 17 15 35 35 H 1.08997 * 109.48111 * 182.40965 * 19 18 17 36 36 H 1.09000 * 109.48212 * 62.37239 * 19 18 17 37 37 H 1.09000 * 109.47932 * 58.81878 * 21 20 19 38 38 H 1.08993 * 109.48024 * 178.86013 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0860 0.5392 7 6 4.2304 -1.1936 2.3577 8 7 3.5765 -1.8380 3.2993 9 14 6.0922 -1.0622 2.4361 10 1 6.5839 -0.2926 1.2651 11 1 6.4872 -0.3669 3.6873 12 1 6.6856 -2.4234 2.4177 13 7 2.0197 -0.6924 -1.1994 14 6 2.0825 0.2227 -2.3469 15 6 2.5951 -0.5330 -3.5745 16 1 3.5497 -1.0040 -3.3399 17 6 2.7796 0.4460 -4.7381 18 6 3.2194 -0.3330 -5.9814 19 6 2.1804 -1.4139 -6.2909 20 8 2.0351 -2.2715 -5.1570 21 6 1.5802 -1.6062 -3.9769 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6054 -0.2618 2.1369 26 1 1.7516 -1.7716 1.2055 27 1 4.0609 -2.2448 4.0347 28 1 1.4496 -1.4978 -1.4101 29 1 2.7589 1.0463 -2.1182 30 1 1.0871 0.6164 -2.5525 31 1 3.5423 1.1805 -4.4792 32 1 1.8374 0.9550 -4.9411 33 1 4.1867 -0.8000 -5.7955 34 1 3.2997 0.3482 -6.8286 35 1 2.5095 -1.9993 -7.1494 36 1 1.2231 -0.9440 -6.5164 37 1 0.6150 -1.1388 -4.1722 38 1 1.4769 -2.3301 -3.1685 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:46 Heat of formation + Delta-G solvation = -71.721486 kcal Electronic energy + Delta-G solvation = -16242.595347 eV Core-core repulsion = 13697.916064 eV Total energy + Delta-G solvation = -2544.679284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46201 -36.80127 -34.14735 -32.69065 -31.76048 -29.11042 -27.21791 -25.12579 -24.94962 -22.97665 -21.54015 -20.11401 -19.55035 -16.30666 -16.24729 -16.01993 -15.08995 -14.78329 -14.64015 -14.31709 -13.66905 -13.32904 -13.28674 -12.65513 -12.53371 -12.14001 -11.79757 -11.60951 -11.35584 -11.24830 -11.09454 -10.90899 -10.74972 -10.46534 -10.24933 -10.23287 -10.00932 -9.41225 -9.22571 -8.92385 -8.21916 -7.54306 -5.84025 -3.81261 3.41098 3.48324 3.53605 3.87955 4.58426 4.60614 4.76469 4.81823 4.93706 5.08549 5.20919 5.41038 5.43436 5.53436 5.61492 5.65503 5.70083 5.74008 5.79922 5.91974 5.93560 6.03642 6.05871 6.14040 6.27849 6.40476 6.55076 6.64675 7.05508 7.19875 7.59217 7.72788 8.05478 8.09873 8.20474 8.64546 9.24237 9.79932 11.28243 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027987 B = 0.006233 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.215260 B = 4491.142231 C = 5030.677704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.064 0.936 4 C 0.032 3.968 5 C -0.486 4.486 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.664 5.664 14 C 0.068 3.932 15 C -0.121 4.121 16 H 0.091 0.909 17 C -0.116 4.116 18 C -0.155 4.155 19 C 0.060 3.940 20 O -0.382 6.382 21 C 0.065 3.935 22 H 0.056 0.944 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.256 0.744 28 H 0.329 0.671 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.044 0.956 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.773 3.760 -16.901 17.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.082 0.918 4 C -0.005 4.005 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.062 4.062 15 C -0.140 4.140 16 H 0.109 0.891 17 C -0.154 4.154 18 C -0.193 4.193 19 C -0.017 4.017 20 O -0.301 6.301 21 C -0.011 4.011 22 H 0.075 0.925 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.032 3.557 -16.580 17.430 hybrid contribution 0.028 0.452 -0.044 0.455 sum -4.004 4.009 -16.624 17.563 Atomic orbital electron populations 1.22558 0.99598 1.01173 1.00571 1.21797 0.89817 0.98153 0.92313 0.91821 1.19123 0.96272 0.95403 0.89726 1.21185 0.91903 1.32651 1.06693 0.92361 1.25009 0.97974 0.95964 0.96083 1.69975 1.35051 1.37143 1.12420 0.86580 0.86542 0.77558 0.77535 1.19896 1.21455 1.21302 1.60577 1.57734 1.08571 1.02575 1.21911 0.98268 0.95837 0.90170 1.21826 1.01308 0.96432 0.94481 0.89056 1.21600 1.01515 0.97861 0.94453 1.22182 1.00293 0.98385 0.98439 1.22546 0.97611 0.92539 0.89025 1.87948 1.87769 1.35088 1.19287 1.22689 0.95292 0.95788 0.87364 0.92460 0.94500 0.93042 0.96502 0.96498 0.93435 0.85315 0.91088 0.96460 0.91316 0.92188 0.90916 0.91218 0.89263 0.93595 0.93806 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 9.16 37.16 0.34 -2.69 16 2 C 0.09 1.79 2.53 -67.72 -0.17 1.62 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.49 -13.88 8.84 -34.44 -0.30 -14.18 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.78 13.29 55.43 0.74 -27.04 16 9 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.66 -12.31 5.96 -106.73 -0.64 -12.95 16 14 C 0.07 1.03 4.95 -3.82 -0.02 1.01 16 15 C -0.12 -1.65 2.59 -90.48 -0.23 -1.88 16 16 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 17 C -0.12 -1.29 5.31 -26.55 -0.14 -1.43 16 18 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16 19 C 0.06 0.62 6.84 37.20 0.25 0.88 16 20 O -0.38 -5.24 10.77 -35.23 -0.38 -5.62 16 21 C 0.07 0.86 5.85 37.21 0.22 1.07 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 24 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.33 5.68 6.80 -39.29 -0.27 5.41 16 29 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 30 H 0.02 0.24 7.44 -51.93 -0.39 -0.14 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.34 6.81 -51.93 -0.35 0.98 16 LS Contribution 301.29 15.07 4.54 4.54 Total: -1.00 -30.95 301.29 -8.04 -38.98 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -6.83 Total: -0.06 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -0.45 Total: -15.29 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.10 Total: -39.99 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.38 Total: -5.62 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.95 -8.04 -38.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.738 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds