Wall clock time and date at job start Mon Mar 30 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 H 1.07993 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46803 * 60.00539 * 9 7 5 11 11 H 1.48499 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00184 * 9 7 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46953 * 304.99344 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 18 18 C 1.53006 * 109.46846 * 185.00040 * 15 14 13 19 19 C 1.52995 * 117.49555 * 248.74420 * 18 15 14 20 20 C 1.52995 * 117.49792 * 180.08660 * 18 15 14 21 21 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.09002 * 109.46957 * 60.00792 * 16 15 14 31 31 H 1.09004 * 109.46951 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47815 * 300.00593 * 16 15 14 33 33 H 0.96702 * 113.99557 * 60.00388 * 17 15 14 34 34 H 1.08997 * 115.54853 * 34.41146 * 18 15 14 35 35 H 1.08998 * 117.49984 * 359.97438 * 19 18 15 36 36 H 1.09006 * 117.49830 * 145.02021 * 19 18 15 37 37 H 1.09000 * 117.49832 * 214.98051 * 20 18 15 38 38 H 1.09004 * 117.49814 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8378 -3.2993 9 14 6.0921 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2269 11 1 6.5871 -1.7613 -3.6490 12 1 6.4845 0.3698 -2.4971 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 1.7184 -1.7614 3.8211 17 8 3.9445 -0.9483 3.3479 18 6 2.5437 0.3854 4.7970 19 6 3.8759 0.8441 5.3935 20 6 3.0212 -0.1887 6.1324 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 4.0609 -2.2453 -4.0343 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.7557 -2.4155 2.9500 31 1 2.0842 -2.2994 4.6957 32 1 0.6898 -1.4445 3.9937 33 1 4.5584 -0.2194 3.1839 34 1 1.7125 1.0901 4.8205 35 1 4.7896 0.4914 4.9150 36 1 3.9210 1.8505 5.8098 37 1 2.5044 0.1386 7.0345 38 1 3.3723 -1.2206 6.1399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:11 Heat of formation + Delta-G solvation = -36.256061 kcal Electronic energy + Delta-G solvation = -16432.581270 eV Core-core repulsion = 13889.439883 eV Total energy + Delta-G solvation = -2543.141387 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.29143 -36.50304 -34.77375 -32.76756 -31.53288 -28.98016 -27.19062 -25.75236 -23.11149 -22.35006 -21.95636 -19.88464 -19.48520 -16.80063 -16.27703 -15.81276 -14.85288 -14.50709 -14.41348 -14.18381 -13.44796 -12.92822 -12.64039 -12.37236 -12.20225 -11.89791 -11.72592 -11.52208 -11.36287 -11.34156 -10.96817 -10.82376 -10.57660 -10.49465 -10.44755 -10.02575 -9.96253 -9.61644 -9.11761 -8.91286 -8.17988 -7.45224 -5.80560 -3.77480 3.46088 3.49548 3.53750 3.70396 4.33412 4.63291 4.64440 4.86795 4.88113 5.05715 5.20031 5.35332 5.44485 5.56737 5.57185 5.73578 5.76365 5.82280 5.90166 5.94639 6.04109 6.07110 6.10494 6.18759 6.22103 6.40688 6.49634 6.66799 7.08324 7.62274 7.75306 7.99227 8.09794 8.14815 8.25647 8.68003 9.27080 9.83218 11.31742 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.007197 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.142295 B = 3889.403662 C = 4594.554024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.484 4.484 6 H 0.057 0.943 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.281 1.281 13 N -0.654 5.654 14 C 0.040 3.960 15 C 0.165 3.835 16 C -0.138 4.138 17 O -0.541 6.541 18 C -0.183 4.183 19 C -0.179 4.179 20 C -0.170 4.170 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.035 0.965 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.257 0.743 27 H 0.331 0.669 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.372 0.628 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 4.529 16.122 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.022 4.022 3 H 0.080 0.920 4 C -0.004 4.004 5 C -0.523 4.523 6 H 0.075 0.925 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.207 1.207 13 N -0.285 5.285 14 C -0.090 4.090 15 C 0.124 3.876 16 C -0.195 4.195 17 O -0.347 6.347 18 C -0.202 4.202 19 C -0.216 4.216 20 C -0.207 4.207 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.150 0.850 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.220 0.780 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.596 3.920 15.873 16.741 hybrid contribution 0.230 0.802 0.038 0.835 sum -3.366 4.722 15.911 16.935 Atomic orbital electron populations 1.22562 0.99720 1.01142 1.00499 1.21813 0.89730 0.98096 0.92518 0.91992 1.19102 0.96268 0.95354 0.89646 1.21092 0.91855 1.32714 1.06592 0.92466 1.25001 0.97935 0.95988 0.96091 1.69956 1.35211 1.37124 1.12446 0.86691 0.86540 0.77810 0.77082 1.20307 1.21726 1.20687 1.60509 1.57833 1.08177 1.02027 1.22556 0.98759 0.96072 0.91637 1.20606 0.83776 0.93001 0.90262 1.21704 0.97833 0.97200 1.02787 1.86577 1.17479 1.37216 1.93450 1.23132 0.98845 1.02867 0.95329 1.22966 0.95191 0.99142 1.04252 1.22866 1.03844 0.99276 0.94730 0.92518 0.93063 0.94541 0.96563 0.96595 0.93375 0.84960 0.95898 0.91231 0.90797 0.92182 0.91906 0.77962 0.87734 0.88107 0.89136 0.89322 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.16 37.15 0.34 -2.73 16 2 C 0.09 1.80 2.53 -67.71 -0.17 1.63 16 3 H 0.06 1.30 7.80 -51.93 -0.40 0.89 16 4 C 0.03 0.88 4.65 -27.88 -0.13 0.75 16 5 C -0.48 -13.93 8.84 -34.44 -0.30 -14.24 16 6 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -28.03 13.29 55.43 0.74 -27.29 16 9 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 10 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.65 -12.39 5.84 -106.72 -0.62 -13.01 16 14 C 0.04 0.62 4.68 -3.82 -0.02 0.60 16 15 C 0.17 2.26 0.99 -90.62 -0.09 2.17 16 16 C -0.14 -1.80 8.23 37.16 0.31 -1.49 16 17 O -0.54 -8.53 12.08 -35.23 -0.43 -8.96 16 18 C -0.18 -2.05 5.15 -90.62 -0.47 -2.52 16 19 C -0.18 -1.83 9.74 -26.70 -0.26 -2.09 16 20 C -0.17 -1.74 9.68 -26.70 -0.26 -2.00 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.86 8.13 -51.93 -0.42 0.43 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.15 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.33 5.98 6.36 -39.29 -0.25 5.73 16 28 H 0.02 0.33 7.44 -51.93 -0.39 -0.06 16 29 H 0.07 1.11 8.06 -51.93 -0.42 0.70 16 30 H 0.07 1.08 6.51 -51.93 -0.34 0.74 16 31 H 0.06 0.74 7.29 -51.93 -0.38 0.36 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.37 5.09 7.56 45.56 0.34 5.44 16 34 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 35 H 0.10 1.05 6.37 -51.93 -0.33 0.72 16 36 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 1.07 7.61 -51.93 -0.40 0.68 16 LS Contribution 304.76 15.07 4.59 4.59 Total: -1.00 -31.51 304.76 -7.76 -39.26 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.87 Total: 6.39 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -1.15 Total: -18.59 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.11 Total: -40.30 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.43 Total: -8.96 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.51 -7.76 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.005 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds