Wall clock time and date at job start Mon Mar 30 2020 04:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 C 1.53002 * 109.47222 * 239.99839 * 2 1 3 5 5 C 1.50704 * 109.46822 * 175.00037 * 4 2 1 6 6 H 1.07993 * 119.99979 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99739 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46803 * 60.00539 * 9 7 5 11 11 H 1.48499 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47334 * 300.00184 * 9 7 5 13 13 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 14 14 C 1.46901 * 110.99793 * 275.00325 * 13 2 1 15 15 C 1.53000 * 109.46769 * 180.02562 * 14 13 2 16 16 C 1.52998 * 109.46953 * 304.99344 * 15 14 13 17 17 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 18 18 C 1.53006 * 109.46846 * 185.00040 * 15 14 13 19 19 C 1.52995 * 117.49555 * 248.74420 * 18 15 14 20 20 C 1.52995 * 117.49792 * 180.08660 * 18 15 14 21 21 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.08998 * 109.46846 * 294.99798 * 4 2 1 25 25 H 1.08995 * 109.47022 * 55.00260 * 4 2 1 26 26 H 0.97000 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00898 * 110.99995 * 38.95403 * 13 2 1 28 28 H 1.09002 * 109.47401 * 59.99808 * 14 13 2 29 29 H 1.09001 * 109.46874 * 299.99821 * 14 13 2 30 30 H 1.09002 * 109.46957 * 60.00792 * 16 15 14 31 31 H 1.09004 * 109.46951 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47815 * 300.00593 * 16 15 14 33 33 H 0.96702 * 113.99557 * 60.00388 * 17 15 14 34 34 H 1.08997 * 115.54853 * 34.41146 * 18 15 14 35 35 H 1.08998 * 117.49984 * 359.97438 * 19 18 15 36 36 H 1.09006 * 117.49830 * 145.02021 * 19 18 15 37 37 H 1.09000 * 117.49832 * 214.98051 * 20 18 15 38 38 H 1.09004 * 117.49814 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0862 -0.5391 7 6 4.2305 -1.1935 -2.3576 8 7 3.5765 -1.8378 -3.2993 9 14 6.0921 -1.0611 -2.4367 10 1 6.6845 -1.6862 -1.2269 11 1 6.5871 -1.7613 -3.6490 12 1 6.4845 0.3698 -2.4971 13 7 2.0196 -0.6925 1.1995 14 6 2.0823 0.2227 2.3469 15 6 2.5961 -0.5328 3.5742 16 6 1.7184 -1.7614 3.8211 17 8 3.9445 -0.9483 3.3479 18 6 2.5437 0.3854 4.7970 19 6 3.8759 0.8441 5.3935 20 6 3.0212 -0.1887 6.1324 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.7516 -1.7715 -1.2055 25 1 1.6054 -0.2618 -2.1369 26 1 4.0609 -2.2453 -4.0343 27 1 1.4495 -1.4979 1.4101 28 1 1.0869 0.6164 2.5525 29 1 2.7587 1.0463 2.1182 30 1 1.7557 -2.4155 2.9500 31 1 2.0842 -2.2994 4.6957 32 1 0.6898 -1.4445 3.9937 33 1 4.5584 -0.2194 3.1839 34 1 1.7125 1.0901 4.8205 35 1 4.7896 0.4914 4.9150 36 1 3.9210 1.8505 5.8098 37 1 2.5044 0.1386 7.0345 38 1 3.3723 -1.2206 6.1399 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695779161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:11 Heat of formation + Delta-G solvation = -58.318784 kcal Electronic energy + Delta-G solvation = -16433.537982 eV Core-core repulsion = 13889.439883 eV Total energy + Delta-G solvation = -2544.098099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.34773 -37.96585 -35.85813 -34.77698 -33.02605 -30.38920 -29.05821 -26.93719 -25.05242 -23.20504 -23.07883 -21.43436 -20.67376 -18.38733 -17.81999 -17.12055 -16.43288 -16.12104 -15.77095 -15.46752 -14.64672 -14.50627 -14.17625 -13.59201 -13.53574 -13.23234 -13.20922 -13.03798 -12.87658 -12.62298 -12.45926 -12.37626 -12.21123 -11.89520 -11.80285 -11.35039 -11.25912 -11.09389 -10.91873 -10.52826 -10.45029 -8.91070 -8.07519 -6.11859 1.41534 1.45660 1.52543 2.49180 2.87276 3.19701 3.29008 3.59380 3.88064 3.96276 4.01646 4.19283 4.26081 4.33553 4.43335 4.53057 4.58576 4.70296 4.80542 4.88229 4.94474 4.96721 5.00347 5.15873 5.23000 5.26961 5.29847 5.32223 5.38439 5.52638 5.69914 5.91906 6.36144 6.52997 6.73654 6.95992 7.01640 7.53277 9.04614 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026631 B = 0.007197 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.142295 B = 3889.403662 C = 4594.554024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 H 0.057 0.943 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.056 0.944 7 C -0.009 4.009 8 N -0.943 5.943 9 Si 0.958 3.042 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.675 5.675 14 C 0.044 3.956 15 C 0.165 3.835 16 C -0.137 4.137 17 O -0.564 6.564 18 C -0.186 4.186 19 C -0.178 4.178 20 C -0.164 4.164 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.066 0.934 24 H -0.013 1.013 25 H -0.009 1.009 26 H 0.258 0.742 27 H 0.335 0.665 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.378 0.622 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 5.601 17.992 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 H 0.076 0.924 4 C 0.000 4.000 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.204 4.204 8 N -0.585 5.585 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.307 5.307 14 C -0.085 4.085 15 C 0.124 3.876 16 C -0.195 4.195 17 O -0.371 6.371 18 C -0.205 4.205 19 C -0.214 4.214 20 C -0.201 4.201 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.006 0.994 25 H 0.009 0.991 26 H 0.066 0.934 27 H 0.154 0.846 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.227 0.773 34 H 0.136 0.864 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.525 5.007 17.762 18.788 hybrid contribution 0.195 0.453 -0.532 0.726 sum -3.330 5.460 17.230 18.379 Atomic orbital electron populations 1.22413 0.96808 1.01685 1.01953 1.21469 0.92024 0.96771 0.90937 0.92432 1.18998 0.95197 0.94039 0.91773 1.21441 0.93359 1.32205 1.06335 0.92601 1.25882 1.02978 0.95752 0.95830 1.70092 1.37126 1.38162 1.13131 0.85607 0.80551 0.78358 0.77088 1.19921 1.21325 1.19361 1.60334 1.58340 1.09154 1.02832 1.22579 0.99727 0.95327 0.90902 1.20674 0.82779 0.93581 0.90593 1.21721 0.99016 0.96753 1.01974 1.86555 1.18643 1.38270 1.93638 1.22998 0.99952 1.02982 0.94558 1.23043 0.94507 1.00001 1.03896 1.22906 1.03538 0.98791 0.94868 0.92559 0.93006 0.91523 0.99438 0.99078 0.93356 0.84554 0.93872 0.92043 0.92934 0.91700 0.89854 0.77324 0.86445 0.88740 0.87571 0.87449 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 9.16 71.98 0.66 -4.88 16 2 C 0.10 3.98 2.53 44.91 0.11 4.10 16 3 H 0.06 2.38 7.80 -2.39 -0.02 2.36 16 4 C 0.04 2.00 4.65 29.85 0.14 2.14 16 5 C -0.49 -28.93 8.84 25.60 0.23 -28.70 16 6 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 7 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 8 N -0.94 -59.49 13.29 21.45 0.28 -59.20 16 9 Si 0.96 46.74 29.54 68.60 2.03 48.77 16 10 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 13 N -0.67 -25.17 5.84 -491.55 -2.87 -28.04 16 14 C 0.04 1.29 4.68 86.30 0.40 1.69 16 15 C 0.16 4.24 0.99 -10.79 -0.01 4.23 16 16 C -0.14 -3.37 8.23 71.98 0.59 -2.78 16 17 O -0.56 -17.38 12.08 -148.98 -1.80 -19.18 16 18 C -0.19 -3.69 5.15 -10.79 -0.06 -3.75 16 19 C -0.18 -3.22 9.74 30.61 0.30 -2.92 16 20 C -0.16 -2.94 9.68 30.61 0.30 -2.64 16 21 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.05 1.67 8.13 -2.39 -0.02 1.66 16 23 H 0.07 1.78 7.45 -2.39 -0.02 1.76 16 24 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H 0.33 11.96 6.36 -89.70 -0.57 11.39 16 28 H 0.04 1.09 7.44 -2.39 -0.02 1.08 16 29 H 0.06 1.88 8.06 -2.39 -0.02 1.86 16 30 H 0.05 1.51 6.51 -2.39 -0.02 1.49 16 31 H 0.06 1.51 7.29 -2.38 -0.02 1.49 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.38 10.15 7.56 -74.06 -0.56 9.59 16 34 H 0.12 2.06 8.11 -2.39 -0.02 2.04 16 35 H 0.09 1.83 6.37 -2.39 -0.02 1.82 16 36 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.09 1.75 7.61 -2.38 -0.02 1.73 16 Total: -1.00 -67.79 304.76 0.67 -67.12 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -0.10 Total: 24.12 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 3.12 Total: -33.58 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -2.58 Total: -87.24 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.80 Total: -19.18 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -67.79 0.67 -67.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.804 kcal (2) G-P(sol) polarization free energy of solvation -67.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds