Wall clock time and date at job start Mon Mar 30 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47571 * 2 1 4 4 C 1.53000 * 109.47354 * 119.99744 * 2 1 3 5 5 C 1.50703 * 109.47551 * 184.99845 * 4 2 1 6 6 H 1.08002 * 119.99467 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00145 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47265 * 89.99921 * 9 7 5 11 11 H 1.48500 * 109.47295 * 210.00298 * 9 7 5 12 12 H 1.48508 * 109.46878 * 329.99855 * 9 7 5 13 13 N 1.46898 * 109.47335 * 239.99778 * 2 1 3 14 14 C 1.46900 * 111.00249 * 84.99852 * 13 2 1 15 15 C 1.52992 * 109.47583 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47267 * 59.99939 * 15 14 13 17 17 O 1.42900 * 109.47092 * 300.00061 * 15 14 13 18 18 C 1.53006 * 109.47420 * 180.02562 * 15 14 13 19 19 C 1.53000 * 117.49776 * 184.99829 * 18 15 14 20 20 C 1.52997 * 117.49537 * 253.62284 * 18 15 14 21 21 H 1.08994 * 109.47035 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46474 * 300.00179 * 1 2 3 23 23 H 1.08995 * 109.46689 * 59.99874 * 1 2 3 24 24 H 1.09000 * 109.46898 * 305.00221 * 4 2 1 25 25 H 1.09004 * 109.47071 * 64.99960 * 4 2 1 26 26 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00601 * 208.95592 * 13 2 1 28 28 H 1.09005 * 109.46977 * 59.99771 * 14 13 2 29 29 H 1.09007 * 109.47315 * 300.00686 * 14 13 2 30 30 H 1.08998 * 109.47416 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47250 * 299.99960 * 16 15 14 32 32 H 1.08996 * 109.47171 * 60.00279 * 16 15 14 33 33 H 0.96703 * 113.99935 * 300.00366 * 17 15 14 34 34 H 1.09002 * 115.56020 * 39.30412 * 18 15 14 35 35 H 1.08990 * 117.49990 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.49237 * 214.97568 * 19 18 15 37 37 H 1.08999 * 117.49685 * 145.02116 * 20 18 15 38 38 H 1.08997 * 117.50044 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 5.5412 -1.1003 2.4134 9 14 3.3017 -2.1098 3.6947 10 1 3.1711 -3.5396 3.3157 11 1 4.0450 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5951 -0.5333 -3.5744 16 6 1.6453 -1.6890 -3.8952 17 8 3.9000 -1.0498 -3.3052 18 6 2.6611 0.4199 -4.7695 19 6 3.0404 -0.1746 -6.1272 20 6 1.5986 0.2616 -5.8588 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5070 3.1489 27 1 2.9174 -1.1206 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5526 30 1 2.0107 -2.2277 -4.7694 31 1 1.5988 -2.3680 -3.0438 32 1 0.6500 -1.2950 -4.1006 33 1 4.5557 -0.3713 -3.0934 34 1 3.0077 1.4292 -4.5474 35 1 3.2432 -1.2447 -6.1691 36 1 3.6365 0.4436 -6.7985 37 1 1.2463 1.1667 -6.3535 38 1 0.8528 -0.5219 -5.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:13 Heat of formation + Delta-G solvation = -39.012603 kcal Electronic energy + Delta-G solvation = -16440.714553 eV Core-core repulsion = 13897.453633 eV Total energy + Delta-G solvation = -2543.260920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24788 -36.50038 -35.16516 -32.67770 -31.37870 -29.05288 -27.83697 -25.76696 -23.08266 -22.44008 -21.77508 -19.66455 -19.15689 -16.79869 -16.66415 -15.94757 -15.01885 -14.89665 -14.34267 -13.91761 -13.60428 -12.96965 -12.66654 -12.33671 -12.22236 -11.94587 -11.77053 -11.55597 -11.51144 -11.21133 -11.17141 -10.74033 -10.66926 -10.47122 -10.25585 -10.10656 -9.84666 -9.61429 -9.34918 -9.15170 -8.53614 -7.63843 -6.05000 -4.03078 3.33058 3.39958 3.43902 3.69767 4.43749 4.46473 4.62948 4.88564 5.00824 5.07571 5.18242 5.32275 5.35192 5.57522 5.61300 5.77822 5.82710 5.94473 6.01620 6.02273 6.09210 6.13168 6.18618 6.22644 6.35490 6.45371 6.62734 6.73912 6.80298 7.20877 7.30694 7.77681 7.92383 7.99138 8.32762 8.50203 8.96590 9.57927 11.08070 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.006472 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.760175 B = 4325.024417 C = 4758.816495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.032 0.968 4 C -0.017 4.017 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.677 5.677 14 C 0.040 3.960 15 C 0.164 3.836 16 C -0.130 4.130 17 O -0.550 6.550 18 C -0.184 4.184 19 C -0.167 4.167 20 C -0.179 4.179 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.039 0.961 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.263 0.737 27 H 0.364 0.636 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.374 0.626 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 2.639 -13.473 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.014 4.014 3 H 0.050 0.950 4 C -0.054 4.054 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.709 3.291 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.313 5.313 14 C -0.090 4.090 15 C 0.123 3.877 16 C -0.187 4.187 17 O -0.356 6.356 18 C -0.203 4.203 19 C -0.204 4.204 20 C -0.215 4.215 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.072 0.928 27 H 0.187 0.813 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.221 0.779 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.677 1.762 -13.636 16.259 hybrid contribution 0.763 0.808 1.097 1.562 sum -7.914 2.571 -12.539 15.049 Atomic orbital electron populations 1.21825 0.96759 1.01309 0.99646 1.21393 0.93156 0.95957 0.90917 0.94964 1.19768 0.97043 0.95966 0.92662 1.21058 0.89853 1.35248 1.09782 0.91342 1.25001 0.94681 0.95702 0.97871 1.69915 1.06569 1.45280 1.32294 0.86752 0.80358 0.80636 0.81353 1.20214 1.21561 1.19088 1.60509 1.35702 1.31334 1.03726 1.22512 1.00190 0.94190 0.92148 1.20671 0.83985 0.92550 0.90539 1.21701 0.97036 0.97769 1.02231 1.86580 1.19371 1.37720 1.91888 1.23059 1.05377 1.00664 0.91228 1.22842 0.97758 1.01712 0.98117 1.23088 0.92674 1.03383 1.02398 0.92658 0.93415 0.94208 0.96186 0.96088 0.92766 0.81349 0.95813 0.91256 0.93093 0.90225 0.91637 0.77851 0.88071 0.88429 0.89222 0.89192 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.42 37.16 0.35 -1.99 16 2 C 0.10 1.93 2.59 -67.71 -0.18 1.75 16 3 H 0.03 0.68 7.80 -51.92 -0.40 0.28 16 4 C -0.02 -0.40 3.64 -27.88 -0.10 -0.50 16 5 C -0.52 -14.55 8.67 -34.44 -0.30 -14.85 16 6 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 13 N -0.68 -12.89 5.54 -106.72 -0.59 -13.48 16 14 C 0.04 0.63 4.63 -3.83 -0.02 0.62 16 15 C 0.16 2.32 0.99 -90.62 -0.09 2.23 16 16 C -0.13 -1.80 7.34 37.15 0.27 -1.52 16 17 O -0.55 -8.81 12.29 -35.23 -0.43 -9.24 16 18 C -0.18 -2.18 5.32 -90.62 -0.48 -2.66 16 19 C -0.17 -1.79 9.85 -26.73 -0.26 -2.05 16 20 C -0.18 -1.82 9.65 -26.73 -0.26 -2.07 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.04 0.60 7.45 -51.93 -0.39 0.22 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.36 7.92 6.60 -39.29 -0.26 7.67 16 28 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 29 H 0.07 1.04 7.44 -51.92 -0.39 0.65 16 30 H 0.05 0.66 6.96 -51.93 -0.36 0.29 16 31 H 0.08 1.27 7.60 -51.93 -0.39 0.87 16 32 H 0.06 0.80 6.74 -51.93 -0.35 0.45 16 33 H 0.37 5.17 9.04 45.56 0.41 5.59 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.11 7.29 -51.93 -0.38 0.73 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.02 5.89 -51.93 -0.31 0.71 16 LS Contribution 299.99 15.07 4.52 4.52 Total: -1.00 -29.95 299.99 -7.25 -37.20 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.69 Total: 9.78 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.16 Total: -19.16 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.18 Total: -40.32 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.43 Total: -9.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.95 -7.25 -37.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.817 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds