Wall clock time and date at job start Mon Mar 30 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47571 * 2 1 4 4 C 1.53000 * 109.47354 * 119.99744 * 2 1 3 5 5 C 1.50703 * 109.47551 * 184.99845 * 4 2 1 6 6 H 1.08002 * 119.99467 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99993 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00145 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47265 * 89.99921 * 9 7 5 11 11 H 1.48500 * 109.47295 * 210.00298 * 9 7 5 12 12 H 1.48508 * 109.46878 * 329.99855 * 9 7 5 13 13 N 1.46898 * 109.47335 * 239.99778 * 2 1 3 14 14 C 1.46900 * 111.00249 * 84.99852 * 13 2 1 15 15 C 1.52992 * 109.47583 * 180.02562 * 14 13 2 16 16 C 1.52994 * 109.47267 * 59.99939 * 15 14 13 17 17 O 1.42900 * 109.47092 * 300.00061 * 15 14 13 18 18 C 1.53006 * 109.47420 * 180.02562 * 15 14 13 19 19 C 1.53000 * 117.49776 * 184.99829 * 18 15 14 20 20 C 1.52997 * 117.49537 * 253.62284 * 18 15 14 21 21 H 1.08994 * 109.47035 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46474 * 300.00179 * 1 2 3 23 23 H 1.08995 * 109.46689 * 59.99874 * 1 2 3 24 24 H 1.09000 * 109.46898 * 305.00221 * 4 2 1 25 25 H 1.09004 * 109.47071 * 64.99960 * 4 2 1 26 26 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 27 27 H 1.00899 * 111.00601 * 208.95592 * 13 2 1 28 28 H 1.09005 * 109.46977 * 59.99771 * 14 13 2 29 29 H 1.09007 * 109.47315 * 300.00686 * 14 13 2 30 30 H 1.08998 * 109.47416 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47250 * 299.99960 * 16 15 14 32 32 H 1.08996 * 109.47171 * 60.00279 * 16 15 14 33 33 H 0.96703 * 113.99935 * 300.00366 * 17 15 14 34 34 H 1.09002 * 115.56020 * 39.30412 * 18 15 14 35 35 H 1.08990 * 117.49990 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.49237 * 214.97568 * 19 18 15 37 37 H 1.08999 * 117.49685 * 145.02116 * 20 18 15 38 38 H 1.08997 * 117.50044 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2305 -1.1935 2.3578 8 7 5.5412 -1.1003 2.4134 9 14 3.3017 -2.1098 3.6947 10 1 3.1711 -3.5396 3.3157 11 1 4.0450 -2.0031 4.9759 12 1 1.9505 -1.5148 3.8554 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2225 -2.3469 15 6 2.5951 -0.5333 -3.5744 16 6 1.6453 -1.6890 -3.8952 17 8 3.9000 -1.0498 -3.3052 18 6 2.6611 0.4199 -4.7695 19 6 3.0404 -0.1746 -6.1272 20 6 1.5986 0.2616 -5.8588 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.6054 -0.2616 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 6.0255 -1.5070 3.1489 27 1 2.9174 -1.1206 -1.0287 28 1 2.7589 1.0461 -2.1182 29 1 1.0871 0.6163 -2.5526 30 1 2.0107 -2.2277 -4.7694 31 1 1.5988 -2.3680 -3.0438 32 1 0.6500 -1.2950 -4.1006 33 1 4.5557 -0.3713 -3.0934 34 1 3.0077 1.4292 -4.5474 35 1 3.2432 -1.2447 -6.1691 36 1 3.6365 0.4436 -6.7985 37 1 1.2463 1.1667 -6.3535 38 1 0.8528 -0.5219 -5.7244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695779162.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:13 Heat of formation + Delta-G solvation = -60.392768 kcal Electronic energy + Delta-G solvation = -16441.641667 eV Core-core repulsion = 13897.453633 eV Total energy + Delta-G solvation = -2544.188034 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35177 -37.96689 -36.33431 -34.72116 -32.89176 -30.45642 -29.57009 -26.99393 -24.76646 -23.44145 -23.01112 -21.13892 -20.44046 -18.96097 -17.74313 -17.23022 -16.42740 -16.24605 -16.11382 -15.40133 -14.81729 -14.57941 -14.13761 -13.76057 -13.56911 -13.42280 -13.30191 -13.19379 -12.73988 -12.59337 -12.49964 -12.04905 -12.04010 -11.77390 -11.72832 -11.40279 -11.36538 -11.22070 -11.04086 -10.75467 -10.58600 -9.17110 -8.28073 -6.30827 1.37310 1.37419 1.49400 2.36986 2.79107 3.05697 3.30409 3.58758 3.86527 3.94198 4.03710 4.16741 4.23567 4.27241 4.44039 4.57936 4.69453 4.72822 4.79132 4.88493 4.97359 5.02339 5.04220 5.10529 5.12968 5.21759 5.27276 5.30936 5.37007 5.50170 5.50533 5.68549 6.23965 6.39547 6.60882 6.74736 6.85044 7.33368 8.88072 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.006472 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.760175 B = 4325.024417 C = 4758.816495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.018 0.982 4 C -0.013 4.013 5 C -0.522 4.522 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.248 1.248 13 N -0.676 5.676 14 C 0.042 3.958 15 C 0.163 3.837 16 C -0.127 4.127 17 O -0.572 6.572 18 C -0.197 4.197 19 C -0.166 4.166 20 C -0.164 4.164 21 H 0.056 0.944 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.023 0.977 25 H 0.020 0.980 26 H 0.265 0.735 27 H 0.344 0.656 28 H 0.013 0.987 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.379 0.621 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.202 2.710 -14.163 17.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.036 0.964 4 C -0.051 4.051 5 C -0.560 4.560 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.172 1.172 13 N -0.309 5.309 14 C -0.088 4.088 15 C 0.123 3.877 16 C -0.184 4.184 17 O -0.378 6.378 18 C -0.216 4.216 19 C -0.203 4.203 20 C -0.200 4.200 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.164 0.836 28 H 0.031 0.969 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.227 0.773 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.126 0.874 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.987 1.852 -14.344 18.163 hybrid contribution 1.531 0.833 1.234 2.135 sum -9.456 2.685 -13.110 16.386 Atomic orbital electron populations 1.21728 0.93615 1.01951 1.01294 1.21366 0.95553 0.94558 0.89912 0.96393 1.19718 0.94185 0.96391 0.94776 1.21328 0.92072 1.34037 1.08549 0.94890 1.25932 0.95497 0.96890 1.00633 1.70062 1.08433 1.46956 1.33489 0.85684 0.79656 0.79353 0.78054 1.19548 1.21201 1.17157 1.60602 1.34256 1.31913 1.04155 1.22598 1.00901 0.93537 0.91717 1.20732 0.83130 0.93096 0.90740 1.21694 0.98033 0.97239 1.01424 1.86553 1.20412 1.38792 1.92071 1.22909 1.07698 1.00191 0.90780 1.22886 0.98734 1.01411 0.97256 1.23194 0.92225 1.04113 1.00492 0.92462 0.92304 0.92100 0.95867 0.96138 0.92663 0.83635 0.96908 0.89636 0.92364 0.92713 0.89658 0.77290 0.87825 0.89281 0.87896 0.87409 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 9.42 71.98 0.68 -3.34 16 2 C 0.10 3.81 2.59 44.92 0.12 3.92 16 3 H 0.02 0.76 7.80 -2.38 -0.02 0.74 16 4 C -0.01 -0.62 3.64 29.85 0.11 -0.51 16 5 C -0.52 -29.77 8.67 25.60 0.22 -29.55 16 6 H 0.03 2.06 7.73 -2.91 -0.02 2.04 16 7 C 0.01 0.44 5.47 84.65 0.46 0.90 16 8 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.95 44.97 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.94 6.54 99.48 0.65 -10.28 16 13 N -0.68 -25.71 5.54 -491.56 -2.73 -28.43 16 14 C 0.04 1.32 4.63 86.30 0.40 1.72 16 15 C 0.16 4.53 0.99 -10.80 -0.01 4.52 16 16 C -0.13 -3.33 7.34 71.98 0.53 -2.81 16 17 O -0.57 -18.69 12.29 -148.98 -1.83 -20.53 16 18 C -0.20 -4.34 5.32 -10.79 -0.06 -4.39 16 19 C -0.17 -3.22 9.85 30.60 0.30 -2.92 16 20 C -0.16 -2.84 9.65 30.60 0.30 -2.55 16 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.06 1.65 7.45 -2.39 -0.02 1.64 16 24 H 0.02 1.08 7.20 -2.39 -0.02 1.06 16 25 H 0.02 0.97 7.57 -2.38 -0.02 0.95 16 26 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 27 H 0.34 15.45 6.60 -89.69 -0.59 14.86 16 28 H 0.01 0.43 8.06 -2.38 -0.02 0.41 16 29 H 0.09 2.38 7.44 -2.38 -0.02 2.36 16 30 H 0.06 1.42 6.96 -2.39 -0.02 1.41 16 31 H 0.05 1.71 7.60 -2.39 -0.02 1.69 16 32 H 0.08 1.86 6.74 -2.39 -0.02 1.85 16 33 H 0.38 11.01 9.04 -74.06 -0.67 10.34 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 1.89 7.29 -2.39 -0.02 1.88 16 36 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.77 5.89 -2.39 -0.01 1.76 16 Total: -1.00 -64.80 299.99 0.39 -64.40 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.28 Total: 32.00 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 3.04 Total: -35.00 kcal Atomic # 7 Polarization: -85.31 SS G_CDS: -2.43 Total: -87.73 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.83 Total: -20.53 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -64.80 0.39 -64.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779162.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.011 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds