Wall clock time and date at job start Mon Mar 30 2020 04:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48504 * 109.47266 * 60.00049 * 9 7 5 11 11 H 1.48504 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47383 * 299.99456 * 9 7 5 13 13 N 1.46900 * 109.47628 * 120.00122 * 2 1 3 14 14 C 1.46903 * 111.00036 * 275.00445 * 13 2 1 15 15 C 1.52996 * 109.46960 * 179.97438 * 14 13 2 16 16 H 1.09002 * 110.43370 * 307.53624 * 15 14 13 17 17 C 1.54883 * 110.49057 * 70.22203 * 15 14 13 18 18 C 1.54887 * 102.75064 * 156.61888 * 17 15 14 19 19 C 1.54259 * 104.19623 * 322.05978 * 18 17 15 20 20 H 1.09004 * 110.03456 * 142.89442 * 19 18 17 21 21 O 1.42898 * 110.07404 * 264.30134 * 19 18 17 22 22 C 1.53872 * 106.60227 * 23.60924 * 19 18 17 23 23 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 24 24 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 25 25 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 1.00905 * 110.99341 * 38.95202 * 13 2 1 30 30 H 1.08996 * 109.46688 * 299.99657 * 14 13 2 31 31 H 1.08999 * 109.47182 * 59.99343 * 14 13 2 32 32 H 1.09001 * 110.75726 * 274.93616 * 17 15 14 33 33 H 1.09000 * 110.75734 * 38.30619 * 17 15 14 34 34 H 1.09002 * 110.48744 * 203.37765 * 18 17 15 35 35 H 1.09004 * 110.48532 * 80.73599 * 18 17 15 36 36 H 0.96701 * 114.00059 * 297.19169 * 21 19 18 37 37 H 1.09005 * 110.03757 * 240.72030 * 22 19 18 38 38 H 1.08992 * 110.07944 * 119.30395 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.6881 -1.6765 -1.2375 11 1 6.5854 -1.7454 -3.6591 12 1 6.4786 0.3828 -2.5010 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5952 -0.5332 3.5744 16 1 2.0074 -1.4365 3.7380 17 6 4.0952 -0.8817 3.4090 18 6 4.5697 -1.0531 4.8734 19 6 3.8080 0.0416 5.6486 20 1 3.5207 -0.3289 6.6326 21 8 4.6255 1.2058 5.7838 22 6 2.5525 0.3722 4.8227 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 4.0598 -2.2352 -4.0406 29 1 1.4496 -1.4979 1.4099 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 4.2169 -1.8109 2.8523 33 1 4.6300 -0.0659 2.9227 34 1 5.6456 -0.8941 4.9469 35 1 4.3028 -2.0415 5.2477 36 1 5.4334 1.0619 6.2953 37 1 2.5671 1.4205 4.5242 38 1 1.6555 0.1627 5.4053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695779593.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:37 Heat of formation + Delta-G solvation = -77.659051 kcal Electronic energy + Delta-G solvation = -16181.534661 eV Core-core repulsion = 13636.597905 eV Total energy + Delta-G solvation = -2544.936756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.95576 -36.72162 -34.92505 -32.58791 -30.80227 -28.64009 -27.38932 -27.04861 -23.50931 -22.53874 -20.58002 -20.14179 -19.19892 -17.14142 -16.13686 -15.79472 -15.20801 -14.50634 -14.40045 -14.07672 -13.76298 -12.86543 -12.72574 -12.35205 -12.28059 -11.86118 -11.70458 -11.43798 -11.41244 -11.14118 -10.80661 -10.65795 -10.58544 -10.45576 -10.29670 -10.21717 -9.96977 -9.86859 -9.18430 -8.92127 -8.19503 -7.45445 -5.82009 -3.79087 3.44704 3.47962 3.51873 4.15549 4.58145 4.61697 4.72135 4.96085 5.01320 5.33689 5.48719 5.53786 5.58473 5.70754 5.73851 5.79852 5.86251 5.89022 5.95966 6.05084 6.10372 6.14788 6.22222 6.34614 6.52968 6.60053 6.68227 6.71278 7.09973 7.61136 7.64375 7.76303 8.10470 8.14046 8.26130 8.67384 9.26116 9.81736 11.30228 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023516 B = 0.007018 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.417173 B = 3988.627917 C = 4909.611575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.280 1.280 13 N -0.662 5.662 14 C 0.068 3.932 15 C -0.086 4.086 16 H 0.071 0.929 17 C -0.101 4.101 18 C -0.160 4.160 19 C 0.100 3.900 20 H 0.051 0.949 21 O -0.566 6.566 22 C -0.115 4.115 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.257 0.743 29 H 0.328 0.672 30 H 0.069 0.931 31 H 0.016 0.984 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.373 0.627 37 H 0.078 0.922 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.876 2.352 16.944 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.291 5.291 14 C -0.061 4.061 15 C -0.105 4.105 16 H 0.089 0.911 17 C -0.139 4.139 18 C -0.198 4.198 19 C 0.041 3.959 20 H 0.069 0.931 21 O -0.372 6.372 22 C -0.153 4.153 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.034 0.966 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.220 0.780 37 H 0.096 0.904 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.662 2.609 16.253 16.545 hybrid contribution 0.494 -0.207 0.441 0.694 sum -1.168 2.402 16.694 16.907 Atomic orbital electron populations 1.22552 0.99687 1.01087 1.00511 1.21787 0.89760 0.98141 0.92403 0.91915 1.19107 0.96192 0.95338 0.89752 1.21116 0.91943 1.32774 1.06541 0.92421 1.25001 0.97891 0.96028 0.96084 1.69955 1.35216 1.37244 1.12283 0.86713 0.86565 0.77933 0.77036 1.20401 1.21692 1.20593 1.60526 1.57548 1.08521 1.02547 1.21992 0.98027 0.95791 0.90318 1.21961 0.97450 0.97747 0.93372 0.91102 1.22359 0.94454 1.02769 0.94290 1.23146 1.00045 0.98677 0.97951 1.22461 0.91119 0.85194 0.97093 0.93128 1.86566 1.37424 1.35679 1.77497 1.22204 0.95469 1.01548 0.96062 0.94486 0.92585 0.93105 0.96602 0.96573 0.93363 0.85434 0.91300 0.96634 0.90647 0.91041 0.91421 0.91305 0.78012 0.90376 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.16 37.16 0.34 -2.75 16 2 C 0.09 1.82 2.53 -67.71 -0.17 1.65 16 3 H 0.06 1.34 7.80 -51.92 -0.40 0.93 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.49 -13.91 8.84 -34.44 -0.30 -14.21 16 6 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -27.87 13.29 55.43 0.74 -27.14 16 9 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.66 -12.42 5.85 -106.73 -0.62 -13.04 16 14 C 0.07 1.08 4.77 -3.82 -0.02 1.06 16 15 C -0.09 -1.17 3.03 -88.96 -0.27 -1.44 16 16 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.10 -1.47 6.22 -24.74 -0.15 -1.63 16 18 C -0.16 -1.83 6.56 -25.08 -0.16 -2.00 16 19 C 0.10 1.11 4.26 -25.62 -0.11 1.00 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 21 O -0.57 -6.64 13.22 -35.23 -0.47 -7.11 16 22 C -0.11 -1.38 6.18 -25.61 -0.16 -1.54 16 23 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.33 5.75 8.47 -39.29 -0.33 5.42 16 30 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 31 H 0.02 0.23 7.44 -51.93 -0.39 -0.15 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 34 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.37 2.74 9.11 45.56 0.41 3.15 16 37 H 0.08 1.03 7.65 -51.93 -0.40 0.64 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -31.58 306.08 -8.08 -39.66 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -6.08 Total: 3.30 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -1.24 Total: -17.77 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.11 Total: -40.18 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.47 Total: -7.11 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.58 -8.08 -39.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695779593.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.998 kcal (2) G-P(sol) polarization free energy of solvation -31.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds