Wall clock time and date at job start Mon Mar 30 2020 04:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46825 * 2 1 4 4 C 1.52997 * 109.47029 * 119.99810 * 2 1 3 5 5 C 1.50706 * 109.46846 * 185.00132 * 4 2 1 6 6 H 1.07994 * 119.99875 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99586 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99348 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00541 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47609 * 89.99565 * 9 7 5 11 11 H 1.48499 * 109.47482 * 209.99703 * 9 7 5 12 12 H 1.48505 * 109.47144 * 329.99620 * 9 7 5 13 13 N 1.46902 * 109.46895 * 239.99906 * 2 1 3 14 14 C 1.46894 * 110.99820 * 84.99972 * 13 2 1 15 15 C 1.53009 * 109.46764 * 180.02562 * 14 13 2 16 16 O 1.42899 * 109.47113 * 64.99856 * 15 14 13 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 1.09010 * 109.47311 * 300.00528 * 1 2 3 22 22 H 1.09005 * 109.47459 * 59.99908 * 1 2 3 23 23 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46939 * 304.99562 * 4 2 1 25 25 H 1.08990 * 109.47357 * 64.99791 * 4 2 1 26 26 H 0.97003 * 119.99463 * 180.02562 * 8 7 5 27 27 H 1.00897 * 110.99841 * 208.95386 * 13 2 1 28 28 H 1.09000 * 109.47283 * 59.99980 * 14 13 2 29 29 H 1.09002 * 109.47562 * 299.99300 * 14 13 2 30 30 H 1.09007 * 109.46516 * 304.99789 * 15 14 13 31 31 H 1.09004 * 109.47113 * 185.00258 * 15 14 13 32 32 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 33 33 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 34 34 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 35 35 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 37 37 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 38 38 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2303 -1.1925 2.3584 8 7 5.5410 -1.1000 2.4134 9 14 3.3015 -2.1076 3.6959 10 1 3.1708 -3.5378 3.3182 11 1 4.0448 -2.0000 4.9770 12 1 1.9503 -1.5125 3.8561 13 7 2.0196 -0.6925 -1.1995 14 6 2.0823 0.2225 -2.3468 15 6 2.5949 -0.5334 -3.5745 16 8 1.6491 -1.5388 -3.9440 17 6 2.0340 -2.3074 -5.0856 18 6 0.9530 -3.3468 -5.3886 19 6 1.3393 -4.8226 -5.2711 20 6 1.1231 -4.1958 -6.6500 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6053 -0.2616 2.1370 25 1 1.7516 -1.7714 1.2057 26 1 6.0254 -1.5068 3.1489 27 1 2.9172 -1.1205 -1.0287 28 1 2.7587 1.0461 -2.1182 29 1 1.0869 0.6162 -2.5526 30 1 3.5505 -1.0022 -3.3396 31 1 2.7259 0.1640 -4.4020 32 1 2.9779 -2.8131 -4.8817 33 1 2.1537 -1.6471 -5.9445 34 1 -0.0611 -3.0675 -5.1030 35 1 2.3635 -5.0530 -4.9776 36 1 0.5793 -5.5144 -4.9081 37 1 0.2208 -4.4753 -7.1940 38 1 2.0049 -4.0135 -7.2642 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:42 Heat of formation + Delta-G solvation = -36.178625 kcal Electronic energy + Delta-G solvation = -15712.360153 eV Core-core repulsion = 13169.222124 eV Total energy + Delta-G solvation = -2543.138030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.40429 -37.02151 -36.00866 -32.76910 -31.35718 -27.99492 -27.66959 -26.08162 -22.81139 -22.48456 -21.46988 -20.56988 -19.37113 -16.89894 -16.72056 -15.98822 -15.45555 -14.83815 -14.46348 -14.36166 -13.97544 -13.13987 -12.88265 -12.74801 -12.27329 -12.02649 -11.71799 -11.65999 -11.48996 -11.31048 -11.05142 -10.76325 -10.67316 -10.46100 -10.20949 -10.19201 -9.77841 -9.43512 -9.28685 -9.18575 -8.54206 -7.57936 -6.05952 -4.03971 3.33209 3.40059 3.44840 3.53959 3.91768 4.46028 4.73651 4.80406 4.86639 4.98761 5.29221 5.30873 5.34346 5.48021 5.49103 5.58350 5.63535 5.73145 5.79095 5.89065 5.98507 5.99819 6.13186 6.17409 6.22386 6.31120 6.51426 6.78042 6.86854 7.22884 7.33090 7.45504 7.78144 7.98164 8.31469 8.49893 8.95781 9.57291 11.07128 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.005342 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.006463 B = 5240.376828 C = 5536.922788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 H 0.033 0.967 4 C -0.017 4.017 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.069 3.931 8 N -0.903 5.903 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.675 5.675 14 C 0.061 3.939 15 C 0.068 3.932 16 O -0.366 6.366 17 C 0.091 3.909 18 C -0.148 4.148 19 C -0.176 4.176 20 C -0.179 4.179 21 H 0.046 0.954 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.021 0.979 25 H 0.022 0.978 26 H 0.263 0.737 27 H 0.356 0.644 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 -2.223 -14.827 16.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 H 0.051 0.949 4 C -0.055 4.055 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.710 3.290 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.310 5.310 14 C -0.069 4.069 15 C -0.009 4.009 16 O -0.285 6.285 17 C 0.014 3.986 18 C -0.166 4.166 19 C -0.213 4.213 20 C -0.216 4.216 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.177 0.823 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.566 -2.551 -14.779 17.271 hybrid contribution 0.765 0.094 0.828 1.131 sum -7.801 -2.457 -13.951 16.171 Atomic orbital electron populations 1.21813 0.96646 1.01399 0.99590 1.21390 0.93324 0.95866 0.90801 0.94911 1.19770 0.96919 0.96053 0.92739 1.21091 0.89960 1.35241 1.09762 0.91354 1.25007 0.94686 0.95704 0.97889 1.69921 1.06591 1.45350 1.32345 0.86738 0.80411 0.80600 0.81296 1.20215 1.21555 1.19002 1.60518 1.34927 1.31731 1.03822 1.21941 1.00594 0.93784 0.90552 1.22549 0.92264 0.89931 0.96201 1.88016 1.45153 1.48822 1.46501 1.21942 0.95727 0.92360 0.88592 1.22114 1.00825 0.91821 1.01812 1.23051 1.02909 0.95777 0.99545 1.22961 1.03294 1.04417 0.90916 0.93499 0.94107 0.92631 0.96119 0.96016 0.92763 0.82324 0.94274 0.91109 0.93286 0.93705 0.93449 0.93636 0.86928 0.88617 0.88683 0.88654 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.41 37.16 0.35 -2.09 16 2 C 0.10 1.99 2.59 -67.71 -0.18 1.81 16 3 H 0.03 0.70 7.80 -51.93 -0.40 0.29 16 4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16 5 C -0.52 -14.66 8.67 -34.44 -0.30 -14.96 16 6 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 N -0.68 -13.46 6.26 -106.73 -0.67 -14.13 16 14 C 0.06 1.01 5.87 -3.82 -0.02 0.99 16 15 C 0.07 0.99 6.22 37.16 0.23 1.22 16 16 O -0.37 -5.79 10.29 -35.23 -0.36 -6.15 16 17 C 0.09 1.14 6.22 37.16 0.23 1.37 16 18 C -0.15 -1.70 6.06 -90.62 -0.55 -2.24 16 19 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16 20 C -0.18 -1.62 10.25 -26.73 -0.27 -1.89 16 21 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 22 H 0.04 0.66 7.45 -51.93 -0.39 0.28 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 25 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.36 7.79 7.21 -39.29 -0.28 7.50 16 28 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 29 H 0.07 1.13 7.44 -51.93 -0.39 0.75 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.10 0.99 8.03 -51.93 -0.42 0.58 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -30.31 311.26 -8.06 -38.37 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.85 Total: 3.32 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.98 Total: -16.52 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.11 Total: -41.00 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.36 Total: -6.15 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.31 -8.06 -38.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds