Wall clock time and date at job start Mon Mar 30 2020 04:18:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09002 * 109.46825 * 2 1
4 4 C 1.52997 * 109.47029 * 119.99810 * 2 1 3
5 5 C 1.50706 * 109.46846 * 185.00132 * 4 2 1
6 6 H 1.07994 * 119.99875 * 359.97438 * 5 4 2
7 7 C 1.37877 * 119.99586 * 179.97438 * 5 4 2
8 8 N 1.31515 * 119.99348 * 179.97438 * 7 5 4
9 9 Si 1.86793 * 120.00541 * 0.02562 * 7 5 4
10 10 H 1.48499 * 109.47609 * 89.99565 * 9 7 5
11 11 H 1.48499 * 109.47482 * 209.99703 * 9 7 5
12 12 H 1.48505 * 109.47144 * 329.99620 * 9 7 5
13 13 N 1.46902 * 109.46895 * 239.99906 * 2 1 3
14 14 C 1.46894 * 110.99820 * 84.99972 * 13 2 1
15 15 C 1.53009 * 109.46764 * 180.02562 * 14 13 2
16 16 O 1.42899 * 109.47113 * 64.99856 * 15 14 13
17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14
18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15
19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16
20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16
21 21 H 1.09010 * 109.47311 * 300.00528 * 1 2 3
22 22 H 1.09005 * 109.47459 * 59.99908 * 1 2 3
23 23 H 1.08998 * 109.47468 * 180.02562 * 1 2 3
24 24 H 1.09004 * 109.46939 * 304.99562 * 4 2 1
25 25 H 1.08990 * 109.47357 * 64.99791 * 4 2 1
26 26 H 0.97003 * 119.99463 * 180.02562 * 8 7 5
27 27 H 1.00897 * 110.99841 * 208.95386 * 13 2 1
28 28 H 1.09000 * 109.47283 * 59.99980 * 14 13 2
29 29 H 1.09002 * 109.47562 * 299.99300 * 14 13 2
30 30 H 1.09007 * 109.46516 * 304.99789 * 15 14 13
31 31 H 1.09004 * 109.47113 * 185.00258 * 15 14 13
32 32 H 1.09002 * 109.47382 * 59.99956 * 17 16 15
33 33 H 1.09001 * 109.46938 * 299.99942 * 17 16 15
34 34 H 1.08995 * 115.55630 * 29.32572 * 18 17 16
35 35 H 1.08998 * 117.50656 * 0.02562 * 19 18 17
36 36 H 1.09001 * 117.49674 * 145.02590 * 19 18 17
37 37 H 1.09003 * 117.49710 * 214.97494 * 20 18 17
38 38 H 1.08998 * 117.50185 * 359.97438 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0399 -0.7212 1.2492
5 6 3.5419 -0.6148 1.3127
6 1 4.0789 -0.0861 0.5392
7 6 4.2303 -1.1925 2.3584
8 7 5.5410 -1.1000 2.4134
9 14 3.3015 -2.1076 3.6959
10 1 3.1708 -3.5378 3.3182
11 1 4.0448 -2.0000 4.9770
12 1 1.9503 -1.5125 3.8561
13 7 2.0196 -0.6925 -1.1995
14 6 2.0823 0.2225 -2.3468
15 6 2.5949 -0.5334 -3.5745
16 8 1.6491 -1.5388 -3.9440
17 6 2.0340 -2.3074 -5.0856
18 6 0.9530 -3.3468 -5.3886
19 6 1.3393 -4.8226 -5.2711
20 6 1.1231 -4.1958 -6.6500
21 1 -0.3634 0.5140 0.8900
22 1 -0.3634 0.5139 -0.8900
23 1 -0.3634 -1.0276 0.0005
24 1 1.6053 -0.2616 2.1370
25 1 1.7516 -1.7714 1.2057
26 1 6.0254 -1.5068 3.1489
27 1 2.9172 -1.1205 -1.0287
28 1 2.7587 1.0461 -2.1182
29 1 1.0869 0.6162 -2.5526
30 1 3.5505 -1.0022 -3.3396
31 1 2.7259 0.1640 -4.4020
32 1 2.9779 -2.8131 -4.8817
33 1 2.1537 -1.6471 -5.9445
34 1 -0.0611 -3.0675 -5.1030
35 1 2.3635 -5.0530 -4.9776
36 1 0.5793 -5.5144 -4.9081
37 1 0.2208 -4.4753 -7.1940
38 1 2.0049 -4.0135 -7.2642
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695781568.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:18:42
Heat of formation + Delta-G solvation = -36.178625 kcal
Electronic energy + Delta-G solvation = -15712.360153 eV
Core-core repulsion = 13169.222124 eV
Total energy + Delta-G solvation = -2543.138030 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.40429 -37.02151 -36.00866 -32.76910 -31.35718 -27.99492 -27.66959 -26.08162
-22.81139 -22.48456 -21.46988 -20.56988 -19.37113 -16.89894 -16.72056 -15.98822
-15.45555 -14.83815 -14.46348 -14.36166 -13.97544 -13.13987 -12.88265 -12.74801
-12.27329 -12.02649 -11.71799 -11.65999 -11.48996 -11.31048 -11.05142 -10.76325
-10.67316 -10.46100 -10.20949 -10.19201 -9.77841 -9.43512 -9.28685 -9.18575
-8.54206 -7.57936 -6.05952 -4.03971 3.33209 3.40059 3.44840 3.53959
3.91768 4.46028 4.73651 4.80406 4.86639 4.98761 5.29221 5.30873
5.34346 5.48021 5.49103 5.58350 5.63535 5.73145 5.79095 5.89065
5.98507 5.99819 6.13186 6.17409 6.22386 6.31120 6.51426 6.78042
6.86854 7.22884 7.33090 7.45504 7.78144 7.98164 8.31469 8.49893
8.95781 9.57291 11.07128
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.026459 B = 0.005342 C = 0.005056
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1058.006463 B = 5240.376828 C = 5536.922788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.096 3.904
3 H 0.033 0.967
4 C -0.017 4.017
5 C -0.523 4.523
6 H 0.068 0.932
7 C 0.069 3.931
8 N -0.903 5.903
9 Si 0.882 3.118
10 H -0.276 1.276
11 H -0.289 1.289
12 H -0.265 1.265
13 N -0.675 5.675
14 C 0.061 3.939
15 C 0.068 3.932
16 O -0.366 6.366
17 C 0.091 3.909
18 C -0.148 4.148
19 C -0.176 4.176
20 C -0.179 4.179
21 H 0.046 0.954
22 H 0.040 0.960
23 H 0.055 0.945
24 H 0.021 0.979
25 H 0.022 0.978
26 H 0.263 0.737
27 H 0.356 0.644
28 H 0.039 0.961
29 H 0.070 0.930
30 H 0.049 0.951
31 H 0.045 0.955
32 H 0.047 0.953
33 H 0.046 0.954
34 H 0.113 0.887
35 H 0.095 0.905
36 H 0.095 0.905
37 H 0.095 0.905
38 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.943 -2.223 -14.827 16.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.014 4.014
3 H 0.051 0.949
4 C -0.055 4.055
5 C -0.561 4.561
6 H 0.086 0.914
7 C -0.133 4.133
8 N -0.542 5.542
9 Si 0.710 3.290
10 H -0.202 1.202
11 H -0.216 1.216
12 H -0.190 1.190
13 N -0.310 5.310
14 C -0.069 4.069
15 C -0.009 4.009
16 O -0.285 6.285
17 C 0.014 3.986
18 C -0.166 4.166
19 C -0.213 4.213
20 C -0.216 4.216
21 H 0.065 0.935
22 H 0.059 0.941
23 H 0.074 0.926
24 H 0.039 0.961
25 H 0.040 0.960
26 H 0.072 0.928
27 H 0.177 0.823
28 H 0.057 0.943
29 H 0.089 0.911
30 H 0.067 0.933
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.064 0.936
34 H 0.131 0.869
35 H 0.114 0.886
36 H 0.113 0.887
37 H 0.113 0.887
38 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -8.566 -2.551 -14.779 17.271
hybrid contribution 0.765 0.094 0.828 1.131
sum -7.801 -2.457 -13.951 16.171
Atomic orbital electron populations
1.21813 0.96646 1.01399 0.99590 1.21390 0.93324 0.95866 0.90801
0.94911 1.19770 0.96919 0.96053 0.92739 1.21091 0.89960 1.35241
1.09762 0.91354 1.25007 0.94686 0.95704 0.97889 1.69921 1.06591
1.45350 1.32345 0.86738 0.80411 0.80600 0.81296 1.20215 1.21555
1.19002 1.60518 1.34927 1.31731 1.03822 1.21941 1.00594 0.93784
0.90552 1.22549 0.92264 0.89931 0.96201 1.88016 1.45153 1.48822
1.46501 1.21942 0.95727 0.92360 0.88592 1.22114 1.00825 0.91821
1.01812 1.23051 1.02909 0.95777 0.99545 1.22961 1.03294 1.04417
0.90916 0.93499 0.94107 0.92631 0.96119 0.96016 0.92763 0.82324
0.94274 0.91109 0.93286 0.93705 0.93449 0.93636 0.86928 0.88617
0.88683 0.88654 0.88887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.44 9.41 37.16 0.35 -2.09 16
2 C 0.10 1.99 2.59 -67.71 -0.18 1.81 16
3 H 0.03 0.70 7.80 -51.93 -0.40 0.29 16
4 C -0.02 -0.42 3.64 -27.88 -0.10 -0.52 16
5 C -0.52 -14.66 8.67 -34.44 -0.30 -14.96 16
6 H 0.07 2.04 7.73 -52.49 -0.41 1.63 16
7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16
8 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16
9 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16
10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16
13 N -0.68 -13.46 6.26 -106.73 -0.67 -14.13 16
14 C 0.06 1.01 5.87 -3.82 -0.02 0.99 16
15 C 0.07 0.99 6.22 37.16 0.23 1.22 16
16 O -0.37 -5.79 10.29 -35.23 -0.36 -6.15 16
17 C 0.09 1.14 6.22 37.16 0.23 1.37 16
18 C -0.15 -1.70 6.06 -90.62 -0.55 -2.24 16
19 C -0.18 -1.83 10.18 -26.73 -0.27 -2.10 16
20 C -0.18 -1.62 10.25 -26.73 -0.27 -1.89 16
21 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16
22 H 0.04 0.66 7.45 -51.93 -0.39 0.28 16
23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
24 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16
25 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16
26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
27 H 0.36 7.79 7.21 -39.29 -0.28 7.50 16
28 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16
29 H 0.07 1.13 7.44 -51.93 -0.39 0.75 16
30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.58 7.88 -51.93 -0.41 0.17 16
33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16
35 H 0.10 0.99 8.03 -51.93 -0.42 0.58 16
36 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16
37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16
38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16
LS Contribution 311.26 15.07 4.69 4.69
Total: -1.00 -30.31 311.26 -8.06 -38.37
By element:
Atomic # 1 Polarization: 10.17 SS G_CDS: -6.85 Total: 3.32 kcal
Atomic # 6 Polarization: -15.54 SS G_CDS: -0.98 Total: -16.52 kcal
Atomic # 7 Polarization: -41.11 SS G_CDS: 0.11 Total: -41.00 kcal
Atomic # 8 Polarization: -5.79 SS G_CDS: -0.36 Total: -6.15 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal
Total LS contribution 4.69 Total: 4.69 kcal
Total: -30.31 -8.06 -38.37 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695781568.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.196 kcal
(2) G-P(sol) polarization free energy of solvation -30.311 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.115 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.179 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds