Wall clock time and date at job start Mon Mar 30 2020 04:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46825 * 2 1 4 4 C 1.52997 * 109.47029 * 119.99810 * 2 1 3 5 5 C 1.50706 * 109.46846 * 185.00132 * 4 2 1 6 6 H 1.07994 * 119.99875 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99586 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99348 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00541 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47609 * 89.99565 * 9 7 5 11 11 H 1.48499 * 109.47482 * 209.99703 * 9 7 5 12 12 H 1.48505 * 109.47144 * 329.99620 * 9 7 5 13 13 N 1.46902 * 109.46895 * 239.99906 * 2 1 3 14 14 C 1.46894 * 110.99820 * 84.99972 * 13 2 1 15 15 C 1.53009 * 109.46764 * 180.02562 * 14 13 2 16 16 O 1.42899 * 109.47113 * 64.99856 * 15 14 13 17 17 C 1.42903 * 113.99629 * 180.02562 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49371 * 243.61887 * 18 17 16 20 20 C 1.53001 * 117.49608 * 174.99962 * 18 17 16 21 21 H 1.09010 * 109.47311 * 300.00528 * 1 2 3 22 22 H 1.09005 * 109.47459 * 59.99908 * 1 2 3 23 23 H 1.08998 * 109.47468 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46939 * 304.99562 * 4 2 1 25 25 H 1.08990 * 109.47357 * 64.99791 * 4 2 1 26 26 H 0.97003 * 119.99463 * 180.02562 * 8 7 5 27 27 H 1.00897 * 110.99841 * 208.95386 * 13 2 1 28 28 H 1.09000 * 109.47283 * 59.99980 * 14 13 2 29 29 H 1.09002 * 109.47562 * 299.99300 * 14 13 2 30 30 H 1.09007 * 109.46516 * 304.99789 * 15 14 13 31 31 H 1.09004 * 109.47113 * 185.00258 * 15 14 13 32 32 H 1.09002 * 109.47382 * 59.99956 * 17 16 15 33 33 H 1.09001 * 109.46938 * 299.99942 * 17 16 15 34 34 H 1.08995 * 115.55630 * 29.32572 * 18 17 16 35 35 H 1.08998 * 117.50656 * 0.02562 * 19 18 17 36 36 H 1.09001 * 117.49674 * 145.02590 * 19 18 17 37 37 H 1.09003 * 117.49710 * 214.97494 * 20 18 17 38 38 H 1.08998 * 117.50185 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2303 -1.1925 2.3584 8 7 5.5410 -1.1000 2.4134 9 14 3.3015 -2.1076 3.6959 10 1 3.1708 -3.5378 3.3182 11 1 4.0448 -2.0000 4.9770 12 1 1.9503 -1.5125 3.8561 13 7 2.0196 -0.6925 -1.1995 14 6 2.0823 0.2225 -2.3468 15 6 2.5949 -0.5334 -3.5745 16 8 1.6491 -1.5388 -3.9440 17 6 2.0340 -2.3074 -5.0856 18 6 0.9530 -3.3468 -5.3886 19 6 1.3393 -4.8226 -5.2711 20 6 1.1231 -4.1958 -6.6500 21 1 -0.3634 0.5140 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.6053 -0.2616 2.1370 25 1 1.7516 -1.7714 1.2057 26 1 6.0254 -1.5068 3.1489 27 1 2.9172 -1.1205 -1.0287 28 1 2.7587 1.0461 -2.1182 29 1 1.0869 0.6162 -2.5526 30 1 3.5505 -1.0022 -3.3396 31 1 2.7259 0.1640 -4.4020 32 1 2.9779 -2.8131 -4.8817 33 1 2.1537 -1.6471 -5.9445 34 1 -0.0611 -3.0675 -5.1030 35 1 2.3635 -5.0530 -4.9776 36 1 0.5793 -5.5144 -4.9081 37 1 0.2208 -4.4753 -7.1940 38 1 2.0049 -4.0135 -7.2642 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781568.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:42 Heat of formation + Delta-G solvation = -55.946335 kcal Electronic energy + Delta-G solvation = -15713.217346 eV Core-core repulsion = 13169.222124 eV Total energy + Delta-G solvation = -2543.995222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47552 -38.33228 -37.22938 -34.80413 -32.98457 -29.81496 -28.97537 -27.21312 -24.70213 -23.24099 -22.82745 -21.49136 -21.08338 -18.96586 -17.90164 -17.18845 -16.68757 -16.31224 -16.18376 -15.47444 -15.36770 -14.63608 -14.40464 -14.09155 -13.80878 -13.61758 -13.46093 -13.09516 -12.64613 -12.51801 -12.36911 -12.24827 -12.07434 -11.76959 -11.73797 -11.36010 -11.25469 -11.21688 -11.09109 -10.75968 -10.35554 -9.15262 -8.28982 -6.31806 1.37468 1.37797 1.50005 2.36961 2.60944 3.00907 3.05325 3.44936 3.88529 3.98157 4.09134 4.19401 4.24818 4.34593 4.38643 4.45019 4.60681 4.61096 4.70415 4.72115 4.76344 4.78455 4.89297 5.02564 5.04640 5.12899 5.23953 5.24851 5.27801 5.36041 5.50121 5.68210 6.23415 6.32924 6.43300 6.62648 6.74315 7.32723 8.87096 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026459 B = 0.005342 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.006463 B = 5240.376828 C = 5536.922788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.096 3.904 3 H 0.023 0.977 4 C -0.013 4.013 5 C -0.524 4.524 6 H 0.035 0.965 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.948 3.052 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.249 1.249 13 N -0.681 5.681 14 C 0.060 3.940 15 C 0.071 3.929 16 O -0.391 6.391 17 C 0.088 3.912 18 C -0.168 4.168 19 C -0.186 4.186 20 C -0.155 4.155 21 H 0.060 0.940 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.265 0.735 27 H 0.339 0.661 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -2.599 -15.534 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.013 4.013 3 H 0.041 0.959 4 C -0.050 4.050 5 C -0.562 4.562 6 H 0.053 0.947 7 C -0.188 4.188 8 N -0.589 5.589 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.172 1.172 13 N -0.314 5.314 14 C -0.069 4.069 15 C -0.006 4.006 16 O -0.310 6.310 17 C 0.011 3.989 18 C -0.186 4.186 19 C -0.223 4.223 20 C -0.192 4.192 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.293 -2.914 -15.507 18.839 hybrid contribution 1.341 0.246 0.959 1.666 sum -8.953 -2.668 -14.548 17.289 Atomic orbital electron populations 1.21720 0.93922 1.01713 1.01175 1.21361 0.95402 0.94761 0.89809 0.95859 1.19710 0.94226 0.96354 0.94729 1.21352 0.92047 1.34161 1.08651 0.94684 1.25914 0.95486 0.96826 1.00576 1.70060 1.08401 1.46945 1.33533 0.85689 0.79668 0.79354 0.78098 1.19540 1.21107 1.17239 1.60616 1.33789 1.32590 1.04391 1.22026 1.01266 0.93521 0.90108 1.22508 0.91464 0.90286 0.96323 1.87969 1.45696 1.49383 1.47983 1.22104 0.95978 0.92653 0.88144 1.22117 1.00021 0.92103 1.04393 1.23126 1.02853 0.95200 1.01131 1.23061 1.04398 1.01625 0.90072 0.92105 0.92392 0.92892 0.95764 0.96234 0.92597 0.84208 0.94298 0.90135 0.94212 0.90744 0.93705 0.91825 0.87901 0.88985 0.88289 0.87076 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.41 71.98 0.68 -3.60 16 2 C 0.10 3.93 2.59 44.91 0.12 4.05 16 3 H 0.02 0.99 7.80 -2.39 -0.02 0.97 16 4 C -0.01 -0.60 3.64 29.85 0.11 -0.49 16 5 C -0.52 -29.89 8.67 25.60 0.22 -29.67 16 6 H 0.03 2.17 7.73 -2.91 -0.02 2.15 16 7 C 0.01 0.53 5.47 84.65 0.46 0.99 16 8 N -0.95 -59.25 13.96 21.45 0.30 -58.96 16 9 Si 0.95 44.94 27.47 68.60 1.88 46.82 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.25 -11.04 6.54 99.48 0.65 -10.38 16 13 N -0.68 -27.08 6.26 -491.57 -3.08 -30.15 16 14 C 0.06 1.95 5.87 86.31 0.51 2.46 16 15 C 0.07 2.03 6.22 71.99 0.45 2.47 16 16 O -0.39 -12.02 10.29 -148.98 -1.53 -13.55 16 17 C 0.09 2.10 6.22 71.98 0.45 2.54 16 18 C -0.17 -3.67 6.06 -10.79 -0.07 -3.74 16 19 C -0.19 -3.67 10.18 30.60 0.31 -3.36 16 20 C -0.15 -2.45 10.25 30.60 0.31 -2.14 16 21 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 22 H 0.06 1.74 7.45 -2.38 -0.02 1.72 16 23 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.02 1.14 7.20 -2.38 -0.02 1.12 16 25 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 26 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 27 H 0.34 15.23 7.21 -89.70 -0.65 14.59 16 28 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 29 H 0.08 2.45 7.44 -2.39 -0.02 2.43 16 30 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.04 1.07 7.88 -2.39 -0.02 1.06 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.09 1.86 8.03 -2.39 -0.02 1.84 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.91 311.26 1.43 -63.49 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.30 Total: 22.82 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.55 Total: -30.47 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.78 Total: -89.11 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.53 Total: -13.55 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -64.91 1.43 -63.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781568.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.541 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds