Wall clock time and date at job start Mon Mar 30 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47236 * 2 1 4 4 C 1.53002 * 109.47402 * 120.00268 * 2 1 3 5 5 C 1.50698 * 109.47583 * 184.99658 * 4 2 1 6 6 H 1.08005 * 119.99586 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00196 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99789 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47526 * 90.00070 * 9 7 5 11 11 H 1.48504 * 109.47026 * 209.99820 * 9 7 5 12 12 H 1.48499 * 109.47542 * 329.99875 * 9 7 5 13 13 N 1.46902 * 109.47338 * 240.00406 * 2 1 3 14 14 C 1.47019 * 110.99812 * 296.36948 * 13 2 1 15 15 C 1.53096 * 109.25550 * 182.39045 * 14 13 2 16 16 O 1.43015 * 109.29318 * 303.17000 * 15 14 13 17 17 C 1.43015 * 113.74116 * 58.60182 * 16 15 14 18 18 H 1.08997 * 109.50120 * 61.35649 * 17 16 15 19 19 C 1.52997 * 109.50930 * 181.44135 * 17 16 15 20 20 C 1.47015 * 110.99869 * 59.99829 * 13 2 1 21 21 H 1.09001 * 109.50969 * 297.54681 * 20 13 2 22 22 C 1.53004 * 109.54245 * 57.65274 * 20 13 2 23 23 H 1.09006 * 109.47300 * 59.99694 * 1 2 3 24 24 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47096 * 299.99780 * 1 2 3 26 26 H 1.09003 * 109.46913 * 305.00179 * 4 2 1 27 27 H 1.09003 * 109.46410 * 64.99792 * 4 2 1 28 28 H 0.96996 * 119.99726 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.50111 * 302.32295 * 14 13 2 30 30 H 1.08994 * 109.50685 * 62.45349 * 14 13 2 31 31 H 1.09001 * 109.51075 * 63.08715 * 15 14 13 32 32 H 1.09007 * 109.50203 * 183.16908 * 15 14 13 33 33 H 1.09002 * 109.47153 * 179.91301 * 19 17 16 34 34 H 1.09001 * 109.46832 * 59.91492 * 19 17 16 35 35 H 1.09004 * 109.47261 * 299.91473 * 19 17 16 36 36 H 1.08999 * 109.46730 * 179.79930 * 22 20 13 37 37 H 1.08993 * 109.47113 * 299.80640 * 22 20 13 38 38 H 1.09004 * 109.46550 * 59.80564 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1937 2.3577 8 7 3.5765 -1.8389 3.2988 9 14 6.0920 -1.0614 2.4366 10 1 6.4699 0.1607 3.1910 11 1 6.6446 -2.2570 3.1225 12 1 6.6416 -0.9826 1.0593 13 7 2.0197 -0.6924 -1.1995 14 6 1.6205 -2.1074 -1.1909 15 6 2.2005 -2.8031 -2.4251 16 8 1.7578 -2.1228 -3.6027 17 6 2.1289 -0.7423 -3.6440 18 1 3.2154 -0.6571 -3.6337 19 6 1.5784 -0.1032 -4.9205 20 6 1.5483 -0.0257 -2.4220 21 1 0.4596 -0.0640 -2.4609 22 6 2.0083 1.4335 -2.4191 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2054 28 1 4.0609 -2.2463 4.0338 29 1 2.0017 -2.5875 -0.2896 30 1 0.5331 -2.1789 -1.2100 31 1 3.2893 -2.7785 -2.3790 32 1 1.8607 -3.8385 -2.4526 33 1 1.8603 0.9493 -4.9506 34 1 0.4918 -0.1888 -4.9302 35 1 1.9910 -0.6149 -5.7901 36 1 1.6612 1.9257 -3.3276 37 1 1.5946 1.9431 -1.5489 38 1 3.0969 1.4711 -2.3787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695785382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:28 Heat of formation + Delta-G solvation = -48.358148 kcal Electronic energy + Delta-G solvation = -17188.790501 eV Core-core repulsion = 14645.124327 eV Total energy + Delta-G solvation = -2543.666173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.70872 -36.44711 -33.74369 -32.62237 -30.73340 -28.81521 -27.35248 -26.99788 -23.97322 -22.78120 -22.15394 -20.16239 -18.47020 -16.38583 -16.02452 -15.75620 -15.17080 -14.56249 -14.40305 -13.97902 -13.49781 -13.19812 -12.63004 -12.43126 -12.19474 -12.03161 -11.72196 -11.67574 -11.57893 -11.24341 -11.01848 -10.85153 -10.66492 -10.54760 -10.36347 -10.04222 -9.86605 -9.21542 -9.04211 -8.96912 -8.28206 -7.49660 -5.91557 -3.89869 3.37016 3.43489 3.48371 4.04861 4.41815 4.54376 5.00138 5.27894 5.37840 5.45281 5.48206 5.59849 5.66809 5.69324 5.75405 5.83263 5.87501 5.95276 5.98324 6.03528 6.08860 6.18791 6.30767 6.36046 6.44764 6.54932 6.63159 6.72314 6.97932 7.50187 7.50896 7.67811 7.88279 7.98578 8.10212 8.54967 9.16702 9.72365 11.20277 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029491 B = 0.008334 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.199364 B = 3358.896984 C = 3525.762707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.075 0.925 4 C 0.026 3.974 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.505 5.505 14 C 0.018 3.982 15 C 0.065 3.935 16 O -0.392 6.392 17 C 0.094 3.906 18 H 0.063 0.937 19 C -0.143 4.143 20 C 0.046 3.954 21 H 0.042 0.958 22 C -0.144 4.144 23 H 0.042 0.958 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.104 0.896 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 2.667 -12.247 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.023 4.023 3 H 0.093 0.907 4 C -0.011 4.011 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.199 1.199 13 N -0.230 5.230 14 C -0.110 4.110 15 C -0.012 4.012 16 O -0.311 6.311 17 C 0.036 3.964 18 H 0.081 0.919 19 C -0.201 4.201 20 C -0.063 4.063 21 H 0.060 0.940 22 C -0.202 4.202 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.116 2.501 -12.230 13.144 hybrid contribution 0.247 0.050 0.502 0.562 sum -3.869 2.551 -11.728 12.610 Atomic orbital electron populations 1.22516 0.99900 1.01259 1.00711 1.21961 0.89998 0.98875 0.91500 0.90660 1.19269 0.96439 0.95375 0.89973 1.21177 0.91731 1.33064 1.07089 0.92096 1.25010 0.98038 0.95839 0.95967 1.69963 1.35260 1.36813 1.12370 0.86639 0.86353 0.77248 0.78013 1.20985 1.21550 1.19905 1.62387 1.58643 1.01155 1.00784 1.22798 0.97688 0.90553 0.99959 1.22674 0.99222 0.95325 0.83938 1.87880 1.79147 1.22344 1.41720 1.22129 0.98657 0.81495 0.94111 0.91861 1.21807 1.01628 1.00277 0.96386 1.22273 0.97417 0.94891 0.91691 0.93999 1.21867 1.02460 0.94568 1.01270 0.93941 0.93082 0.92548 0.96323 0.96173 0.93284 0.87748 0.95089 0.92332 0.89180 0.90950 0.92265 0.92109 0.92699 0.92059 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 8.49 37.15 0.32 -2.95 16 2 C 0.08 1.72 1.92 -67.71 -0.13 1.59 16 3 H 0.08 1.56 6.27 -51.93 -0.33 1.23 16 4 C 0.03 0.66 4.14 -27.88 -0.12 0.55 16 5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16 6 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 13 N -0.51 -9.71 4.28 -218.41 -0.94 -10.65 16 14 C 0.02 0.34 4.88 -3.71 -0.02 0.32 16 15 C 0.07 1.08 7.01 37.21 0.26 1.34 16 16 O -0.39 -6.53 10.47 -35.23 -0.37 -6.90 16 17 C 0.09 1.43 2.92 -26.68 -0.08 1.35 16 18 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 19 C -0.14 -1.69 9.29 37.16 0.35 -1.35 16 20 C 0.05 0.75 1.61 -67.60 -0.11 0.64 16 21 H 0.04 0.69 6.44 -51.93 -0.33 0.36 16 22 C -0.14 -2.06 8.61 37.16 0.32 -1.74 16 23 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16 24 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.02 0.53 6.02 -51.93 -0.31 0.22 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.10 2.21 6.00 -51.93 -0.31 1.89 16 30 H 0.03 0.56 6.52 -51.93 -0.34 0.23 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 0.73 6.52 -51.93 -0.34 0.39 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.63 6.52 -51.93 -0.34 0.29 16 37 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 286.94 15.07 4.32 4.32 Total: -1.00 -29.72 286.94 -7.11 -36.82 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.23 Total: -1.42 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 0.39 Total: -12.83 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: -0.20 Total: -36.89 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.37 Total: -6.90 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.72 -7.11 -36.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.534 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds