Wall clock time and date at job start Mon Mar 30 2020 03:28:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09004 * 109.47236 * 2 1
4 4 C 1.53002 * 109.47402 * 120.00268 * 2 1 3
5 5 C 1.50698 * 109.47583 * 184.99658 * 4 2 1
6 6 H 1.08005 * 119.99586 * 0.02562 * 5 4 2
7 7 C 1.37876 * 120.00196 * 180.02562 * 5 4 2
8 8 N 1.31513 * 119.99824 * 0.02562 * 7 5 4
9 9 Si 1.86793 * 119.99789 * 180.02562 * 7 5 4
10 10 H 1.48505 * 109.47526 * 90.00070 * 9 7 5
11 11 H 1.48504 * 109.47026 * 209.99820 * 9 7 5
12 12 H 1.48499 * 109.47542 * 329.99875 * 9 7 5
13 13 N 1.46902 * 109.47338 * 240.00406 * 2 1 3
14 14 C 1.47019 * 110.99812 * 296.36948 * 13 2 1
15 15 C 1.53096 * 109.25550 * 182.39045 * 14 13 2
16 16 O 1.43015 * 109.29318 * 303.17000 * 15 14 13
17 17 C 1.43015 * 113.74116 * 58.60182 * 16 15 14
18 18 H 1.08997 * 109.50120 * 61.35649 * 17 16 15
19 19 C 1.52997 * 109.50930 * 181.44135 * 17 16 15
20 20 C 1.47015 * 110.99869 * 59.99829 * 13 2 1
21 21 H 1.09001 * 109.50969 * 297.54681 * 20 13 2
22 22 C 1.53004 * 109.54245 * 57.65274 * 20 13 2
23 23 H 1.09006 * 109.47300 * 59.99694 * 1 2 3
24 24 H 1.08994 * 109.47264 * 179.97438 * 1 2 3
25 25 H 1.09003 * 109.47096 * 299.99780 * 1 2 3
26 26 H 1.09003 * 109.46913 * 305.00179 * 4 2 1
27 27 H 1.09003 * 109.46410 * 64.99792 * 4 2 1
28 28 H 0.96996 * 119.99726 * 179.97438 * 8 7 5
29 29 H 1.09000 * 109.50111 * 302.32295 * 14 13 2
30 30 H 1.08994 * 109.50685 * 62.45349 * 14 13 2
31 31 H 1.09001 * 109.51075 * 63.08715 * 15 14 13
32 32 H 1.09007 * 109.50203 * 183.16908 * 15 14 13
33 33 H 1.09002 * 109.47153 * 179.91301 * 19 17 16
34 34 H 1.09001 * 109.46832 * 59.91492 * 19 17 16
35 35 H 1.09004 * 109.47261 * 299.91473 * 19 17 16
36 36 H 1.08999 * 109.46730 * 179.79930 * 22 20 13
37 37 H 1.08993 * 109.47113 * 299.80640 * 22 20 13
38 38 H 1.09004 * 109.46550 * 59.80564 * 22 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5419 -0.6151 1.3127
6 1 4.0789 -0.0856 0.5395
7 6 4.2304 -1.1937 2.3577
8 7 3.5765 -1.8389 3.2988
9 14 6.0920 -1.0614 2.4366
10 1 6.4699 0.1607 3.1910
11 1 6.6446 -2.2570 3.1225
12 1 6.6416 -0.9826 1.0593
13 7 2.0197 -0.6924 -1.1995
14 6 1.6205 -2.1074 -1.1909
15 6 2.2005 -2.8031 -2.4251
16 8 1.7578 -2.1228 -3.6027
17 6 2.1289 -0.7423 -3.6440
18 1 3.2154 -0.6571 -3.6337
19 6 1.5784 -0.1032 -4.9205
20 6 1.5483 -0.0257 -2.4220
21 1 0.4596 -0.0640 -2.4609
22 6 2.0083 1.4335 -2.4191
23 1 -0.3634 0.5139 -0.8900
24 1 -0.3633 -1.0276 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.6054 -0.2618 2.1370
27 1 1.7516 -1.7716 1.2054
28 1 4.0609 -2.2463 4.0338
29 1 2.0017 -2.5875 -0.2896
30 1 0.5331 -2.1789 -1.2100
31 1 3.2893 -2.7785 -2.3790
32 1 1.8607 -3.8385 -2.4526
33 1 1.8603 0.9493 -4.9506
34 1 0.4918 -0.1888 -4.9302
35 1 1.9910 -0.6149 -5.7901
36 1 1.6612 1.9257 -3.3276
37 1 1.5946 1.9431 -1.5489
38 1 3.0969 1.4711 -2.3787
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695785382.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:28
Heat of formation + Delta-G solvation = -48.358148 kcal
Electronic energy + Delta-G solvation = -17188.790501 eV
Core-core repulsion = 14645.124327 eV
Total energy + Delta-G solvation = -2543.666173 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.70872 -36.44711 -33.74369 -32.62237 -30.73340 -28.81521 -27.35248 -26.99788
-23.97322 -22.78120 -22.15394 -20.16239 -18.47020 -16.38583 -16.02452 -15.75620
-15.17080 -14.56249 -14.40305 -13.97902 -13.49781 -13.19812 -12.63004 -12.43126
-12.19474 -12.03161 -11.72196 -11.67574 -11.57893 -11.24341 -11.01848 -10.85153
-10.66492 -10.54760 -10.36347 -10.04222 -9.86605 -9.21542 -9.04211 -8.96912
-8.28206 -7.49660 -5.91557 -3.89869 3.37016 3.43489 3.48371 4.04861
4.41815 4.54376 5.00138 5.27894 5.37840 5.45281 5.48206 5.59849
5.66809 5.69324 5.75405 5.83263 5.87501 5.95276 5.98324 6.03528
6.08860 6.18791 6.30767 6.36046 6.44764 6.54932 6.63159 6.72314
6.97932 7.50187 7.50896 7.67811 7.88279 7.98578 8.10212 8.54967
9.16702 9.72365 11.20277
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.029491 B = 0.008334 C = 0.007940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 949.199364 B = 3358.896984 C = 3525.762707
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.084 3.916
3 H 0.075 0.925
4 C 0.026 3.974
5 C -0.492 4.492
6 H 0.061 0.939
7 C 0.051 3.949
8 N -0.903 5.903
9 Si 0.889 3.111
10 H -0.283 1.283
11 H -0.289 1.289
12 H -0.274 1.274
13 N -0.505 5.505
14 C 0.018 3.982
15 C 0.065 3.935
16 O -0.392 6.392
17 C 0.094 3.906
18 H 0.063 0.937
19 C -0.143 4.143
20 C 0.046 3.954
21 H 0.042 0.958
22 C -0.144 4.144
23 H 0.042 0.958
24 H 0.050 0.950
25 H 0.055 0.945
26 H 0.019 0.981
27 H 0.020 0.980
28 H 0.258 0.742
29 H 0.104 0.896
30 H 0.031 0.969
31 H 0.058 0.942
32 H 0.090 0.910
33 H 0.072 0.928
34 H 0.058 0.942
35 H 0.060 0.940
36 H 0.054 0.946
37 H 0.060 0.940
38 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.567 2.667 -12.247 13.340
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.023 4.023
3 H 0.093 0.907
4 C -0.011 4.011
5 C -0.531 4.531
6 H 0.079 0.921
7 C -0.149 4.149
8 N -0.544 5.544
9 Si 0.717 3.283
10 H -0.210 1.210
11 H -0.216 1.216
12 H -0.199 1.199
13 N -0.230 5.230
14 C -0.110 4.110
15 C -0.012 4.012
16 O -0.311 6.311
17 C 0.036 3.964
18 H 0.081 0.919
19 C -0.201 4.201
20 C -0.063 4.063
21 H 0.060 0.940
22 C -0.202 4.202
23 H 0.061 0.939
24 H 0.069 0.931
25 H 0.075 0.925
26 H 0.037 0.963
27 H 0.038 0.962
28 H 0.067 0.933
29 H 0.123 0.877
30 H 0.049 0.951
31 H 0.077 0.923
32 H 0.108 0.892
33 H 0.091 0.909
34 H 0.077 0.923
35 H 0.079 0.921
36 H 0.073 0.927
37 H 0.079 0.921
38 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -4.116 2.501 -12.230 13.144
hybrid contribution 0.247 0.050 0.502 0.562
sum -3.869 2.551 -11.728 12.610
Atomic orbital electron populations
1.22516 0.99900 1.01259 1.00711 1.21961 0.89998 0.98875 0.91500
0.90660 1.19269 0.96439 0.95375 0.89973 1.21177 0.91731 1.33064
1.07089 0.92096 1.25010 0.98038 0.95839 0.95967 1.69963 1.35260
1.36813 1.12370 0.86639 0.86353 0.77248 0.78013 1.20985 1.21550
1.19905 1.62387 1.58643 1.01155 1.00784 1.22798 0.97688 0.90553
0.99959 1.22674 0.99222 0.95325 0.83938 1.87880 1.79147 1.22344
1.41720 1.22129 0.98657 0.81495 0.94111 0.91861 1.21807 1.01628
1.00277 0.96386 1.22273 0.97417 0.94891 0.91691 0.93999 1.21867
1.02460 0.94568 1.01270 0.93941 0.93082 0.92548 0.96323 0.96173
0.93284 0.87748 0.95089 0.92332 0.89180 0.90950 0.92265 0.92109
0.92699 0.92059 0.91669
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.26 8.49 37.15 0.32 -2.95 16
2 C 0.08 1.72 1.92 -67.71 -0.13 1.59 16
3 H 0.08 1.56 6.27 -51.93 -0.33 1.23 16
4 C 0.03 0.66 4.14 -27.88 -0.12 0.55 16
5 C -0.49 -13.62 8.84 -34.44 -0.30 -13.92 16
6 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16
7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16
8 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16
9 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16
10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
12 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16
13 N -0.51 -9.71 4.28 -218.41 -0.94 -10.65 16
14 C 0.02 0.34 4.88 -3.71 -0.02 0.32 16
15 C 0.07 1.08 7.01 37.21 0.26 1.34 16
16 O -0.39 -6.53 10.47 -35.23 -0.37 -6.90 16
17 C 0.09 1.43 2.92 -26.68 -0.08 1.35 16
18 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
19 C -0.14 -1.69 9.29 37.16 0.35 -1.35 16
20 C 0.05 0.75 1.61 -67.60 -0.11 0.64 16
21 H 0.04 0.69 6.44 -51.93 -0.33 0.36 16
22 C -0.14 -2.06 8.61 37.16 0.32 -1.74 16
23 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16
24 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16
25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
27 H 0.02 0.53 6.02 -51.93 -0.31 0.22 16
28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
29 H 0.10 2.21 6.00 -51.93 -0.31 1.89 16
30 H 0.03 0.56 6.52 -51.93 -0.34 0.23 16
31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16
33 H 0.07 0.73 6.52 -51.93 -0.34 0.39 16
34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.05 0.63 6.52 -51.93 -0.34 0.29 16
37 H 0.06 0.90 6.39 -51.93 -0.33 0.57 16
38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
LS Contribution 286.94 15.07 4.32 4.32
Total: -1.00 -29.72 286.94 -7.11 -36.82
By element:
Atomic # 1 Polarization: 4.81 SS G_CDS: -6.23 Total: -1.42 kcal
Atomic # 6 Polarization: -13.22 SS G_CDS: 0.39 Total: -12.83 kcal
Atomic # 7 Polarization: -36.70 SS G_CDS: -0.20 Total: -36.89 kcal
Atomic # 8 Polarization: -6.53 SS G_CDS: -0.37 Total: -6.90 kcal
Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -29.72 -7.11 -36.82 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695785382.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.534 kcal
(2) G-P(sol) polarization free energy of solvation -29.719 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.253 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds