Wall clock time and date at job start Mon Mar 30 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47236 * 2 1 4 4 C 1.53002 * 109.47402 * 120.00268 * 2 1 3 5 5 C 1.50698 * 109.47583 * 184.99658 * 4 2 1 6 6 H 1.08005 * 119.99586 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00196 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99824 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99789 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47526 * 90.00070 * 9 7 5 11 11 H 1.48504 * 109.47026 * 209.99820 * 9 7 5 12 12 H 1.48499 * 109.47542 * 329.99875 * 9 7 5 13 13 N 1.46902 * 109.47338 * 240.00406 * 2 1 3 14 14 C 1.47019 * 110.99812 * 296.36948 * 13 2 1 15 15 C 1.53096 * 109.25550 * 182.39045 * 14 13 2 16 16 O 1.43015 * 109.29318 * 303.17000 * 15 14 13 17 17 C 1.43015 * 113.74116 * 58.60182 * 16 15 14 18 18 H 1.08997 * 109.50120 * 61.35649 * 17 16 15 19 19 C 1.52997 * 109.50930 * 181.44135 * 17 16 15 20 20 C 1.47015 * 110.99869 * 59.99829 * 13 2 1 21 21 H 1.09001 * 109.50969 * 297.54681 * 20 13 2 22 22 C 1.53004 * 109.54245 * 57.65274 * 20 13 2 23 23 H 1.09006 * 109.47300 * 59.99694 * 1 2 3 24 24 H 1.08994 * 109.47264 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47096 * 299.99780 * 1 2 3 26 26 H 1.09003 * 109.46913 * 305.00179 * 4 2 1 27 27 H 1.09003 * 109.46410 * 64.99792 * 4 2 1 28 28 H 0.96996 * 119.99726 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.50111 * 302.32295 * 14 13 2 30 30 H 1.08994 * 109.50685 * 62.45349 * 14 13 2 31 31 H 1.09001 * 109.51075 * 63.08715 * 15 14 13 32 32 H 1.09007 * 109.50203 * 183.16908 * 15 14 13 33 33 H 1.09002 * 109.47153 * 179.91301 * 19 17 16 34 34 H 1.09001 * 109.46832 * 59.91492 * 19 17 16 35 35 H 1.09004 * 109.47261 * 299.91473 * 19 17 16 36 36 H 1.08999 * 109.46730 * 179.79930 * 22 20 13 37 37 H 1.08993 * 109.47113 * 299.80640 * 22 20 13 38 38 H 1.09004 * 109.46550 * 59.80564 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3127 6 1 4.0789 -0.0856 0.5395 7 6 4.2304 -1.1937 2.3577 8 7 3.5765 -1.8389 3.2988 9 14 6.0920 -1.0614 2.4366 10 1 6.4699 0.1607 3.1910 11 1 6.6446 -2.2570 3.1225 12 1 6.6416 -0.9826 1.0593 13 7 2.0197 -0.6924 -1.1995 14 6 1.6205 -2.1074 -1.1909 15 6 2.2005 -2.8031 -2.4251 16 8 1.7578 -2.1228 -3.6027 17 6 2.1289 -0.7423 -3.6440 18 1 3.2154 -0.6571 -3.6337 19 6 1.5784 -0.1032 -4.9205 20 6 1.5483 -0.0257 -2.4220 21 1 0.4596 -0.0640 -2.4609 22 6 2.0083 1.4335 -2.4191 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7716 1.2054 28 1 4.0609 -2.2463 4.0338 29 1 2.0017 -2.5875 -0.2896 30 1 0.5331 -2.1789 -1.2100 31 1 3.2893 -2.7785 -2.3790 32 1 1.8607 -3.8385 -2.4526 33 1 1.8603 0.9493 -4.9506 34 1 0.4918 -0.1888 -4.9302 35 1 1.9910 -0.6149 -5.7901 36 1 1.6612 1.9257 -3.3276 37 1 1.5946 1.9431 -1.5489 38 1 3.0969 1.4711 -2.3787 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695785382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:26 Heat of formation + Delta-G solvation = -67.979005 kcal Electronic energy + Delta-G solvation = -17189.641325 eV Core-core repulsion = 14645.124327 eV Total energy + Delta-G solvation = -2544.516998 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08326 -37.92146 -35.22936 -34.46437 -32.36846 -30.03155 -29.16463 -28.37307 -25.51311 -24.49378 -23.53575 -21.57535 -19.98412 -18.38618 -17.52087 -17.20725 -16.62581 -16.31090 -15.83156 -15.40949 -14.88443 -14.84864 -13.99948 -13.90771 -13.61665 -13.46938 -13.22407 -13.16264 -12.91048 -12.75758 -12.47778 -12.45351 -12.32619 -12.05057 -11.90458 -11.80194 -11.27347 -11.10268 -10.96792 -10.48501 -10.40391 -8.98421 -8.11356 -6.16419 1.40963 1.41639 1.53026 2.46157 2.81251 3.02002 3.24578 3.79318 4.04046 4.08586 4.18283 4.26749 4.30524 4.44543 4.51044 4.51737 4.56176 4.64926 4.75190 4.86971 4.89050 4.95158 5.06532 5.07749 5.12159 5.15535 5.17706 5.34381 5.41468 5.50752 5.70950 5.88577 6.20958 6.28266 6.39113 6.49622 6.97459 7.49818 9.00598 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029491 B = 0.008334 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.199364 B = 3358.896984 C = 3525.762707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 H 0.073 0.927 4 C 0.033 3.967 5 C -0.499 4.499 6 H 0.057 0.943 7 C -0.003 4.003 8 N -0.939 5.939 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.268 1.268 13 N -0.524 5.524 14 C 0.022 3.978 15 C 0.071 3.929 16 O -0.396 6.396 17 C 0.089 3.911 18 H 0.054 0.946 19 C -0.136 4.136 20 C 0.047 3.953 21 H 0.045 0.955 22 C -0.140 4.140 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.058 0.942 26 H -0.009 1.009 27 H 0.000 1.000 28 H 0.259 0.741 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.447 3.576 -14.199 15.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.015 4.015 3 H 0.091 0.909 4 C -0.005 4.005 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.249 5.249 14 C -0.106 4.106 15 C -0.006 4.006 16 O -0.316 6.316 17 C 0.031 3.969 18 H 0.072 0.928 19 C -0.194 4.194 20 C -0.061 4.061 21 H 0.062 0.938 22 C -0.198 4.198 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.009 0.991 27 H 0.018 0.982 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.999 3.422 -14.200 15.144 hybrid contribution 0.191 -0.231 1.101 1.141 sum -3.808 3.191 -13.099 14.010 Atomic orbital electron populations 1.22384 0.97657 1.01321 1.02004 1.21661 0.91725 0.97906 0.90160 0.90879 1.19124 0.95349 0.94513 0.91465 1.21456 0.93096 1.32455 1.06743 0.92447 1.25831 1.02770 0.95612 0.95716 1.70089 1.37086 1.37877 1.13065 0.85596 0.80720 0.77380 0.78216 1.20178 1.21263 1.19223 1.62320 1.59474 1.01490 1.01575 1.22683 0.97808 0.90495 0.99592 1.22635 0.98526 0.96302 0.83105 1.87888 1.79127 1.23263 1.41277 1.22334 0.98370 0.80869 0.95319 0.92790 1.21805 1.01729 1.01236 0.94594 1.22395 0.97537 0.95826 0.90389 0.93768 1.21863 1.01769 0.93412 1.02726 0.91542 0.93611 0.92300 0.99070 0.98180 0.93249 0.91138 0.94717 0.93305 0.86935 0.88849 0.91874 0.91234 0.89320 0.92712 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.02 8.49 71.98 0.61 -5.41 16 2 C 0.09 3.81 1.92 44.91 0.09 3.90 16 3 H 0.07 3.01 6.27 -2.38 -0.01 2.99 16 4 C 0.03 1.69 4.14 29.85 0.12 1.81 16 5 C -0.50 -28.16 8.84 25.60 0.23 -27.94 16 6 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 9 Si 0.95 45.32 29.54 68.60 2.03 47.35 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.52 -19.94 4.28 -844.91 -3.62 -23.56 16 14 C 0.02 0.84 4.88 86.31 0.42 1.26 16 15 C 0.07 2.30 7.01 72.01 0.50 2.80 16 16 O -0.40 -12.47 10.47 -148.98 -1.56 -14.03 16 17 C 0.09 2.49 2.92 30.63 0.09 2.58 16 18 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 19 C -0.14 -2.74 9.29 71.98 0.67 -2.07 16 20 C 0.05 1.42 1.61 44.93 0.07 1.49 16 21 H 0.04 1.34 6.44 -2.39 -0.02 1.32 16 22 C -0.14 -3.66 8.61 71.98 0.62 -3.04 16 23 H 0.07 1.97 6.46 -2.38 -0.02 1.95 16 24 H 0.04 1.61 6.54 -2.39 -0.02 1.59 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.00 0.00 6.02 -2.39 -0.01 -0.01 16 28 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 29 H 0.07 3.11 6.00 -2.39 -0.01 3.09 16 30 H 0.03 1.26 6.52 -2.39 -0.02 1.24 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 33 H 0.09 1.48 6.52 -2.39 -0.02 1.46 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.09 1.70 6.52 -2.39 -0.02 1.68 16 37 H 0.05 1.50 6.39 -2.39 -0.02 1.48 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.05 286.94 2.04 -62.01 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.02 Total: 9.64 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.88 Total: -24.31 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -3.33 Total: -80.66 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -1.56 Total: -14.03 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -64.05 2.04 -62.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695785382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.965 kcal (2) G-P(sol) polarization free energy of solvation -64.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds