Wall clock time and date at job start Mon Mar 30 2020 04:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 C 1.52996 * 109.47211 * 119.99747 * 2 1 3 5 5 C 1.50704 * 109.47110 * 186.71538 * 4 2 1 6 6 H 1.07997 * 119.99776 * 5.01111 * 5 4 2 7 7 C 1.37874 * 119.99902 * 185.01188 * 5 4 2 8 8 N 1.31522 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47314 * 89.99805 * 9 7 5 11 11 H 1.48496 * 109.47386 * 209.99890 * 9 7 5 12 12 H 1.48506 * 109.46914 * 329.99869 * 9 7 5 13 13 N 1.46897 * 109.47127 * 240.00113 * 2 1 3 14 14 C 1.46906 * 111.00361 * 92.28125 * 13 2 1 15 15 C 1.46898 * 110.99915 * 328.32643 * 13 2 1 16 16 H 1.08992 * 109.52462 * 55.12963 * 15 13 2 17 17 C 1.53181 * 109.57515 * 175.28697 * 15 13 2 18 18 C 1.53181 * 109.03930 * 176.91669 * 17 15 13 19 19 C 1.53089 * 109.15927 * 303.01927 * 18 17 15 20 20 O 1.42919 * 109.42552 * 57.60744 * 19 18 17 21 21 C 1.42901 * 114.08622 * 298.84959 * 20 19 18 22 22 H 1.09002 * 109.47423 * 186.54534 * 1 2 3 23 23 H 1.08998 * 109.47337 * 306.55161 * 1 2 3 24 24 H 1.09001 * 109.46984 * 66.54347 * 1 2 3 25 25 H 1.09004 * 109.47250 * 306.71812 * 4 2 1 26 26 H 1.08998 * 109.46938 * 66.71363 * 4 2 1 27 27 H 0.97005 * 120.00097 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.46871 * 297.54777 * 14 13 2 29 29 H 1.09000 * 109.46982 * 57.54263 * 14 13 2 30 30 H 1.08996 * 109.47260 * 177.55035 * 14 13 2 31 31 H 1.09002 * 109.54260 * 296.78153 * 17 15 13 32 32 H 1.09001 * 109.54615 * 57.04659 * 17 15 13 33 33 H 1.09001 * 109.51862 * 62.92157 * 18 17 15 34 34 H 1.08995 * 109.52037 * 183.11111 * 18 17 15 35 35 H 1.09003 * 109.47747 * 177.59284 * 19 18 17 36 36 H 1.09002 * 109.48230 * 297.62331 * 19 18 17 37 37 H 1.09004 * 109.48248 * 301.16421 * 21 20 19 38 38 H 1.08997 * 109.48570 * 181.13772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5378 -0.5789 1.3351 6 1 4.0635 0.0377 0.6210 7 6 4.2371 -1.2359 2.3252 8 7 3.5969 -1.9872 3.1945 9 14 6.0935 -1.0590 2.4322 10 1 6.4315 0.0948 3.3038 11 1 6.6768 -2.2990 3.0043 12 1 6.6482 -0.8322 1.0734 13 7 2.0196 -0.6925 -1.1994 14 6 2.2466 0.2552 -2.2988 15 6 1.0947 -1.7588 -1.6061 16 1 0.0965 -1.3428 -1.7421 17 6 1.5741 -2.3798 -2.9218 18 6 0.6455 -3.5397 -3.2944 19 6 0.6231 -4.5536 -2.1476 20 8 0.1982 -3.9043 -0.9474 21 6 1.0549 -2.8416 -0.5246 22 1 -0.3634 -1.0210 0.1171 23 1 -0.3634 0.6120 0.8255 24 1 -0.3633 0.4091 -0.9428 25 1 1.5818 -0.2814 2.1352 26 1 1.7781 -1.7776 1.1912 27 1 4.0888 -2.4491 3.8913 28 1 1.3029 0.7270 -2.5724 29 1 2.9554 1.0192 -1.9793 30 1 2.6498 -0.2773 -3.1601 31 1 1.5514 -1.6270 -3.7099 32 1 2.5914 -2.7517 -2.8002 33 1 -0.3618 -3.1597 -3.4644 34 1 1.0115 -4.0226 -4.2004 35 1 -0.0692 -5.3602 -2.3891 36 1 1.6231 -4.9632 -2.0048 37 1 2.0606 -3.2287 -0.3606 38 1 0.6739 -2.4147 0.4032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695813389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:55 Heat of formation + Delta-G solvation = -38.883296 kcal Electronic energy + Delta-G solvation = -17224.116745 eV Core-core repulsion = 14680.861432 eV Total energy + Delta-G solvation = -2543.255313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.62991 -37.04002 -33.53506 -32.43310 -30.63822 -29.77031 -27.34853 -25.36999 -23.89141 -23.43206 -22.10619 -19.88306 -18.83374 -16.46737 -15.80759 -15.67608 -15.07545 -14.59762 -14.55539 -14.30303 -13.46007 -13.28515 -12.86415 -12.58683 -12.02849 -11.91082 -11.73437 -11.69892 -11.27180 -11.21024 -10.89251 -10.73379 -10.58155 -10.51242 -10.37604 -9.99225 -9.61837 -9.24507 -9.03966 -8.86629 -8.19355 -7.44833 -5.86031 -3.83166 3.39652 3.46113 3.50421 4.15845 4.57847 4.65304 5.04167 5.07487 5.17724 5.37908 5.51089 5.57879 5.63067 5.74609 5.78616 5.82723 5.90886 5.98280 6.01574 6.04775 6.07517 6.24010 6.29559 6.31978 6.45678 6.50255 6.61729 6.80982 7.04650 7.46698 7.61609 7.66604 7.96583 8.05166 8.14634 8.60524 9.20173 9.77235 11.25731 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.008853 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.702730 B = 3161.960058 C = 3402.811654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.065 0.935 4 C 0.019 3.981 5 C -0.487 4.487 6 H 0.055 0.945 7 C 0.051 3.949 8 N -0.902 5.902 9 Si 0.887 3.113 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.026 3.974 15 C 0.053 3.947 16 H 0.046 0.954 17 C -0.120 4.120 18 C -0.152 4.152 19 C 0.058 3.942 20 O -0.389 6.389 21 C 0.059 3.941 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.038 0.962 25 H 0.014 0.986 26 H 0.040 0.960 27 H 0.257 0.743 28 H 0.012 0.988 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.838 -0.829 -11.792 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.025 4.025 3 H 0.083 0.917 4 C -0.018 4.018 5 C -0.526 4.526 6 H 0.073 0.927 7 C -0.148 4.148 8 N -0.543 5.543 9 Si 0.716 3.284 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.122 4.122 15 C -0.055 4.055 16 H 0.064 0.936 17 C -0.158 4.158 18 C -0.190 4.190 19 C -0.019 4.019 20 O -0.307 6.307 21 C -0.017 4.017 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.512 -1.215 -11.423 12.742 hybrid contribution 0.600 0.607 -0.310 0.908 sum -4.912 -0.608 -11.733 12.735 Atomic orbital electron populations 1.22594 0.99243 1.02148 1.00243 1.22015 0.90433 0.97857 0.92227 0.91706 1.19499 0.96294 0.96558 0.89461 1.21086 0.92122 1.27657 1.11709 0.92714 1.24972 0.97859 0.95807 0.96164 1.69957 1.35229 1.31806 1.17269 0.86669 0.86560 0.77176 0.77995 1.21076 1.21546 1.20036 1.62132 1.45818 1.11321 1.04118 1.22408 0.99047 0.95926 0.94860 1.22240 0.94781 0.93479 0.95048 0.93576 1.21767 0.99896 0.97228 0.96882 1.22187 1.00480 0.97503 0.98849 1.22512 0.99914 0.94404 0.85087 1.87947 1.52084 1.49278 1.41355 1.23295 0.95538 0.86016 0.96846 0.91886 0.92592 0.94322 0.96823 0.94261 0.93322 0.96991 0.91647 0.91971 0.91901 0.90885 0.91601 0.91284 0.89668 0.93283 0.91481 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 7.81 37.16 0.29 -2.93 16 2 C 0.08 1.68 2.20 -67.72 -0.15 1.53 16 3 H 0.06 1.34 7.65 -51.93 -0.40 0.94 16 4 C 0.02 0.47 4.26 -27.88 -0.12 0.35 16 5 C -0.49 -13.57 8.87 -34.44 -0.31 -13.88 16 6 H 0.05 1.52 7.75 -52.49 -0.41 1.12 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -9.70 4.29 -226.74 -0.97 -10.67 16 14 C 0.03 0.42 8.86 60.07 0.53 0.95 16 15 C 0.05 0.92 1.62 -67.57 -0.11 0.81 16 16 H 0.05 0.79 5.90 -51.93 -0.31 0.49 16 17 C -0.12 -1.75 4.66 -26.54 -0.12 -1.87 16 18 C -0.15 -1.91 6.14 -26.59 -0.16 -2.07 16 19 C 0.06 0.81 6.84 37.20 0.25 1.07 16 20 O -0.39 -6.95 10.77 -35.23 -0.38 -7.33 16 21 C 0.06 1.14 4.43 37.21 0.16 1.30 16 22 H 0.06 1.13 5.09 -51.93 -0.26 0.86 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.61 7.44 -51.93 -0.39 0.22 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 1.03 4.37 -51.93 -0.23 0.80 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.01 0.17 7.96 -51.93 -0.41 -0.24 16 29 H 0.06 1.05 8.00 -51.93 -0.42 0.64 16 30 H 0.06 0.89 6.18 -51.93 -0.32 0.57 16 31 H 0.06 0.83 6.50 -51.93 -0.34 0.49 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 38 H 0.12 2.45 3.91 -51.93 -0.20 2.25 16 LS Contribution 284.49 15.07 4.29 4.29 Total: -1.00 -29.83 284.49 -7.37 -37.19 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.19 Total: -0.84 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 0.17 Total: -13.37 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.24 Total: -36.99 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.38 Total: -7.33 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.83 -7.37 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.691 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds