Wall clock time and date at job start Mon Mar 30 2020 04:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47077 * 2 1 4 4 C 1.52996 * 109.47211 * 119.99747 * 2 1 3 5 5 C 1.50704 * 109.47110 * 186.71538 * 4 2 1 6 6 H 1.07997 * 119.99776 * 5.01111 * 5 4 2 7 7 C 1.37874 * 119.99902 * 185.01188 * 5 4 2 8 8 N 1.31522 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00280 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47314 * 89.99805 * 9 7 5 11 11 H 1.48496 * 109.47386 * 209.99890 * 9 7 5 12 12 H 1.48506 * 109.46914 * 329.99869 * 9 7 5 13 13 N 1.46897 * 109.47127 * 240.00113 * 2 1 3 14 14 C 1.46906 * 111.00361 * 92.28125 * 13 2 1 15 15 C 1.46898 * 110.99915 * 328.32643 * 13 2 1 16 16 H 1.08992 * 109.52462 * 55.12963 * 15 13 2 17 17 C 1.53181 * 109.57515 * 175.28697 * 15 13 2 18 18 C 1.53181 * 109.03930 * 176.91669 * 17 15 13 19 19 C 1.53089 * 109.15927 * 303.01927 * 18 17 15 20 20 O 1.42919 * 109.42552 * 57.60744 * 19 18 17 21 21 C 1.42901 * 114.08622 * 298.84959 * 20 19 18 22 22 H 1.09002 * 109.47423 * 186.54534 * 1 2 3 23 23 H 1.08998 * 109.47337 * 306.55161 * 1 2 3 24 24 H 1.09001 * 109.46984 * 66.54347 * 1 2 3 25 25 H 1.09004 * 109.47250 * 306.71812 * 4 2 1 26 26 H 1.08998 * 109.46938 * 66.71363 * 4 2 1 27 27 H 0.97005 * 120.00097 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.46871 * 297.54777 * 14 13 2 29 29 H 1.09000 * 109.46982 * 57.54263 * 14 13 2 30 30 H 1.08996 * 109.47260 * 177.55035 * 14 13 2 31 31 H 1.09002 * 109.54260 * 296.78153 * 17 15 13 32 32 H 1.09001 * 109.54615 * 57.04659 * 17 15 13 33 33 H 1.09001 * 109.51862 * 62.92157 * 18 17 15 34 34 H 1.08995 * 109.52037 * 183.11111 * 18 17 15 35 35 H 1.09003 * 109.47747 * 177.59284 * 19 18 17 36 36 H 1.09002 * 109.48230 * 297.62331 * 19 18 17 37 37 H 1.09004 * 109.48248 * 301.16421 * 21 20 19 38 38 H 1.08997 * 109.48570 * 181.13772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5378 -0.5789 1.3351 6 1 4.0635 0.0377 0.6210 7 6 4.2371 -1.2359 2.3252 8 7 3.5969 -1.9872 3.1945 9 14 6.0935 -1.0590 2.4322 10 1 6.4315 0.0948 3.3038 11 1 6.6768 -2.2990 3.0043 12 1 6.6482 -0.8322 1.0734 13 7 2.0196 -0.6925 -1.1994 14 6 2.2466 0.2552 -2.2988 15 6 1.0947 -1.7588 -1.6061 16 1 0.0965 -1.3428 -1.7421 17 6 1.5741 -2.3798 -2.9218 18 6 0.6455 -3.5397 -3.2944 19 6 0.6231 -4.5536 -2.1476 20 8 0.1982 -3.9043 -0.9474 21 6 1.0549 -2.8416 -0.5246 22 1 -0.3634 -1.0210 0.1171 23 1 -0.3634 0.6120 0.8255 24 1 -0.3633 0.4091 -0.9428 25 1 1.5818 -0.2814 2.1352 26 1 1.7781 -1.7776 1.1912 27 1 4.0888 -2.4491 3.8913 28 1 1.3029 0.7270 -2.5724 29 1 2.9554 1.0192 -1.9793 30 1 2.6498 -0.2773 -3.1601 31 1 1.5514 -1.6270 -3.7099 32 1 2.5914 -2.7517 -2.8002 33 1 -0.3618 -3.1597 -3.4644 34 1 1.0115 -4.0226 -4.2004 35 1 -0.0692 -5.3602 -2.3891 36 1 1.6231 -4.9632 -2.0048 37 1 2.0606 -3.2287 -0.3606 38 1 0.6739 -2.4147 0.4032 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695813389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:55 Heat of formation + Delta-G solvation = -58.803860 kcal Electronic energy + Delta-G solvation = -17224.980565 eV Core-core repulsion = 14680.861432 eV Total energy + Delta-G solvation = -2544.119133 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01246 -38.46894 -35.25509 -34.11059 -32.18937 -31.11785 -29.23699 -26.66397 -25.27625 -25.23516 -23.57207 -21.30683 -20.29276 -18.46273 -17.32032 -17.07938 -16.68446 -16.24981 -15.86250 -15.80585 -14.85077 -14.67471 -14.42690 -13.95106 -13.64359 -13.47587 -13.34175 -13.14193 -12.95460 -12.56183 -12.48977 -12.39441 -12.16863 -12.10917 -11.82402 -11.44871 -11.21981 -11.09220 -10.87704 -10.44344 -10.28356 -8.89203 -8.06626 -6.10313 1.41427 1.42404 1.53208 2.48516 2.81883 3.22012 3.36229 3.81912 3.92712 4.02950 4.14701 4.20705 4.34228 4.37185 4.48668 4.54547 4.62538 4.69739 4.74842 4.88250 4.90609 4.95765 4.99559 5.04692 5.08798 5.14034 5.26046 5.33006 5.40080 5.52898 5.74776 5.93673 6.17010 6.38654 6.49611 6.56106 7.02274 7.53788 9.05046 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.008853 C = 0.008227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.702730 B = 3161.960058 C = 3402.811654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.091 3.909 3 H 0.061 0.939 4 C 0.021 3.979 5 C -0.495 4.495 6 H 0.053 0.947 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.535 5.535 14 C 0.028 3.972 15 C 0.059 3.941 16 H 0.055 0.945 17 C -0.117 4.117 18 C -0.143 4.143 19 C 0.046 3.954 20 O -0.405 6.405 21 C 0.070 3.930 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.063 0.937 25 H -0.015 1.015 26 H 0.024 0.976 27 H 0.257 0.743 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.031 0.969 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.912 -0.495 -14.256 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 H 0.079 0.921 4 C -0.016 4.016 5 C -0.534 4.534 6 H 0.071 0.929 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.192 1.192 13 N -0.260 5.260 14 C -0.120 4.120 15 C -0.050 4.050 16 H 0.072 0.928 17 C -0.155 4.155 18 C -0.181 4.181 19 C -0.030 4.030 20 O -0.323 6.323 21 C -0.006 4.006 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.003 0.997 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.587 -0.871 -13.910 15.015 hybrid contribution 0.595 0.451 0.448 0.871 sum -4.991 -0.420 -13.462 14.364 Atomic orbital electron populations 1.22449 0.96976 1.02012 1.01718 1.21694 0.92216 0.96732 0.91090 0.92086 1.19410 0.95025 0.96146 0.91031 1.21428 0.93651 1.27000 1.11271 0.92908 1.25801 1.02575 0.95685 0.95997 1.70093 1.36983 1.32920 1.18025 0.85629 0.80988 0.77215 0.78262 1.20240 1.21405 1.19233 1.61962 1.46755 1.12503 1.04796 1.22435 0.99938 0.95425 0.94171 1.22198 0.95001 0.92280 0.95472 0.92759 1.21773 0.99504 0.98449 0.95747 1.22155 1.00616 0.96267 0.99076 1.22854 1.00463 0.95459 0.84247 1.87908 1.51786 1.49153 1.43486 1.22913 0.93388 0.87154 0.97147 0.92604 0.92261 0.91813 0.99657 0.95763 0.93401 0.95135 0.92254 0.90110 0.89658 0.92296 0.90657 0.88203 0.86874 0.93842 0.95108 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 7.81 71.98 0.56 -5.37 16 2 C 0.09 3.71 2.20 44.91 0.10 3.81 16 3 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 4 C 0.02 1.09 4.26 29.85 0.13 1.22 16 5 C -0.49 -28.21 8.87 25.60 0.23 -27.99 16 6 H 0.05 2.96 7.75 -2.91 -0.02 2.94 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 9 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 N -0.54 -19.92 4.29 -871.28 -3.74 -23.66 16 14 C 0.03 0.82 8.86 127.69 1.13 1.95 16 15 C 0.06 1.97 1.62 45.01 0.07 2.04 16 16 H 0.05 1.74 5.90 -2.39 -0.01 1.72 16 17 C -0.12 -3.10 4.66 30.72 0.14 -2.96 16 18 C -0.14 -3.10 6.14 30.68 0.19 -2.92 16 19 C 0.05 1.20 6.84 72.01 0.49 1.70 16 20 O -0.40 -14.42 10.77 -148.98 -1.60 -16.02 16 21 C 0.07 2.79 4.43 72.01 0.32 3.11 16 22 H 0.06 1.99 5.09 -2.39 -0.01 1.98 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.06 1.86 7.44 -2.39 -0.02 1.84 16 25 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 26 H 0.02 1.35 4.37 -2.39 -0.01 1.34 16 27 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 28 H 0.03 0.78 7.96 -2.39 -0.02 0.77 16 29 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 30 H 0.08 2.05 6.18 -2.39 -0.01 2.04 16 31 H 0.08 1.89 6.50 -2.39 -0.02 1.88 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 38 H 0.09 3.99 3.91 -2.39 -0.01 3.98 16 Total: -1.00 -65.60 284.49 1.81 -63.79 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 1.02 Total: 10.97 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 3.83 Total: -25.21 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.46 Total: -81.40 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.60 Total: -16.02 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -65.60 1.81 -63.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695813389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.983 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds