Wall clock time and date at job start Mon Mar 30 2020 03:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47453 * 2 1 4 4 C 1.53008 * 109.47193 * 119.99948 * 2 1 3 5 5 C 1.50701 * 109.47057 * 184.12059 * 4 2 1 6 6 H 1.08002 * 119.99769 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99735 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00555 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99888 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47143 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46828 * 60.00633 * 9 7 5 12 12 H 1.48496 * 109.47304 * 300.00578 * 9 7 5 13 13 N 1.46899 * 109.47100 * 239.99764 * 2 1 3 14 14 C 1.44012 * 111.00365 * 306.53563 * 13 2 1 15 15 C 1.54612 * 112.48682 * 217.17657 * 14 13 2 16 16 C 1.54579 * 110.90324 * 319.60990 * 15 14 13 17 17 O 1.39907 * 113.22025 * 319.28055 * 16 15 14 18 18 C 1.44526 * 112.80498 * 94.90144 * 17 16 15 19 19 C 1.46265 * 111.30799 * 280.44994 * 18 17 16 20 20 H 1.08994 * 108.84292 * 298.81297 * 19 18 17 21 21 C 1.52993 * 108.91643 * 180.21717 * 19 18 17 22 22 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47116 * 300.00068 * 1 2 3 24 24 H 1.08993 * 109.47081 * 60.00143 * 1 2 3 25 25 H 1.08995 * 109.47180 * 64.11975 * 4 2 1 26 26 H 1.09001 * 109.47010 * 304.12087 * 4 2 1 27 27 H 0.97006 * 119.99235 * 359.97438 * 8 7 5 28 28 H 1.09003 * 108.87549 * 337.94897 * 14 13 2 29 29 H 1.08996 * 108.87945 * 96.39175 * 14 13 2 30 30 H 1.08996 * 109.19408 * 199.24186 * 15 14 13 31 31 H 1.09004 * 109.15267 * 79.94635 * 15 14 13 32 32 H 1.09004 * 108.73152 * 198.32273 * 16 15 14 33 33 H 1.08993 * 108.63963 * 80.18546 * 16 15 14 34 34 H 1.08995 * 109.11326 * 159.97891 * 18 17 16 35 35 H 1.09001 * 109.06185 * 40.88345 * 18 17 16 36 36 H 1.09004 * 109.47578 * 297.20785 * 21 19 18 37 37 H 1.09006 * 109.46769 * 57.20358 * 21 19 18 38 38 H 1.08992 * 109.47851 * 177.20577 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5436 -0.6334 1.3014 6 1 4.0815 -0.1147 0.5217 7 6 4.2323 -1.2144 2.3450 8 7 3.5772 -1.8457 3.2947 9 14 6.0960 -1.1062 2.4092 10 1 6.5911 -1.8062 3.6218 11 1 6.5077 0.3199 2.4576 12 1 6.6711 -1.7466 1.1991 13 7 2.0196 -0.6925 -1.1994 14 6 1.4371 -2.0048 -1.3117 15 6 2.4350 -3.0496 -1.8621 16 6 3.2913 -2.4486 -3.0001 17 8 2.5588 -1.6340 -3.8703 18 6 2.6294 -0.2337 -3.5196 19 6 1.7194 0.0854 -2.4198 20 1 0.6983 -0.1305 -2.7340 21 6 1.8340 1.5767 -2.0980 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.7383 -1.7680 1.2132 26 1 1.6176 -0.2518 2.1377 27 1 2.6094 -1.9022 3.2611 28 1 1.0980 -2.3256 -0.3267 29 1 0.5769 -1.9528 -1.9790 30 1 1.8814 -3.9070 -2.2448 31 1 3.0906 -3.3776 -1.0553 32 1 3.7340 -3.2635 -3.5728 33 1 4.0926 -1.8568 -2.5577 34 1 2.3619 0.3660 -4.3895 35 1 3.6494 0.0072 -3.2201 36 1 2.8461 1.7987 -1.7595 37 1 1.6142 2.1593 -2.9927 38 1 1.1235 1.8347 -1.3128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695815546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:55 Heat of formation + Delta-G solvation = -41.908854 kcal Electronic energy + Delta-G solvation = -17438.769291 eV Core-core repulsion = 14895.382780 eV Total energy + Delta-G solvation = -2543.386511 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.84289 -36.99622 -33.72482 -32.94041 -31.36111 -28.56831 -27.04686 -26.36627 -24.49749 -23.01379 -21.21172 -20.58004 -18.33565 -16.66091 -16.48661 -16.21548 -15.29647 -14.75419 -14.02875 -13.79012 -13.62824 -13.30623 -12.96942 -12.38962 -12.12505 -11.93457 -11.56151 -11.45910 -11.33975 -11.24522 -11.00377 -10.77406 -10.58121 -10.44612 -10.07827 -9.99239 -9.92668 -9.37422 -9.16305 -8.46850 -8.21148 -7.55282 -6.21857 -3.87146 3.49750 3.51955 3.70329 4.17361 4.35865 4.64272 5.22365 5.31698 5.38980 5.48773 5.53171 5.58656 5.65619 5.68816 5.76724 5.79312 5.86869 5.94154 5.99562 6.04496 6.22449 6.28374 6.31004 6.35767 6.45093 6.50962 6.57120 6.66065 6.86870 7.30035 7.45978 7.58540 7.84710 7.93988 8.39202 8.65671 9.03377 9.81470 11.18241 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.009997 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.372729 B = 2800.216491 C = 3141.294686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.082 0.918 4 C 0.017 3.983 5 C -0.568 4.568 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.923 5.923 9 Si 1.066 2.934 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.289 1.289 13 N -0.497 5.497 14 C 0.063 3.937 15 C -0.137 4.137 16 C 0.070 3.930 17 O -0.381 6.381 18 C 0.071 3.929 19 C 0.045 3.955 20 H 0.041 0.959 21 C -0.156 4.156 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.009 0.991 26 H 0.008 0.992 27 H 0.265 0.735 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 2.894 -11.695 12.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.100 0.900 4 C -0.020 4.020 5 C -0.607 4.607 6 H 0.071 0.929 7 C -0.194 4.194 8 N -0.560 5.560 9 Si 0.895 3.105 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.216 1.216 13 N -0.221 5.221 14 C -0.066 4.066 15 C -0.175 4.175 16 C -0.008 4.008 17 O -0.300 6.300 18 C -0.005 4.005 19 C -0.063 4.063 20 H 0.059 0.941 21 C -0.213 4.213 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.829 2.344 -10.916 11.314 hybrid contribution -2.182 0.545 -0.687 2.352 sum -4.011 2.889 -11.603 12.612 Atomic orbital electron populations 1.22623 0.99741 1.01360 1.00809 1.21961 0.89846 0.99100 0.91150 0.90049 1.19343 0.97555 0.94618 0.90522 1.21906 0.91254 1.37600 1.09928 0.92895 1.25739 1.06537 0.94086 0.93007 1.70796 1.09905 1.41227 1.34118 0.83583 0.75006 0.76058 0.75833 1.21150 1.21729 1.21619 1.61671 1.58421 1.01501 1.00495 1.21757 0.94615 0.90087 1.00160 1.22629 0.99158 0.97429 0.98319 1.22143 0.93762 0.93956 0.90900 1.87651 1.73690 1.17199 1.51433 1.21727 0.99892 0.82399 0.96524 1.21219 0.98134 0.94458 0.92536 0.94095 1.22090 1.03427 0.94423 1.01371 0.93023 0.92666 0.93787 0.97304 0.97400 0.92471 0.91073 0.95663 0.92660 0.90460 0.91554 0.92304 0.89832 0.92150 0.91350 0.92897 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.20 8.24 37.16 0.31 -2.90 16 2 C 0.09 1.75 1.73 -67.71 -0.12 1.63 16 3 H 0.08 1.65 5.68 -51.93 -0.29 1.36 16 4 C 0.02 0.41 3.67 -27.88 -0.10 0.31 16 5 C -0.57 -15.83 8.82 -34.44 -0.30 -16.13 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.01 0.24 5.46 -17.82 -0.10 0.14 16 8 N -0.92 -28.36 13.65 55.43 0.76 -27.60 16 9 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 13 N -0.50 -9.45 3.87 -223.13 -0.86 -10.31 16 14 C 0.06 1.17 3.82 -4.52 -0.02 1.15 16 15 C -0.14 -2.38 6.52 -25.05 -0.16 -2.55 16 16 C 0.07 1.15 6.20 37.99 0.24 1.38 16 17 O -0.38 -6.30 10.39 -32.68 -0.34 -6.64 16 18 C 0.07 1.06 5.55 33.96 0.19 1.25 16 19 C 0.04 0.71 1.70 -70.42 -0.12 0.59 16 20 H 0.04 0.66 6.90 -51.93 -0.36 0.30 16 21 C -0.16 -2.19 7.79 37.15 0.29 -1.90 16 22 H 0.05 0.89 6.57 -51.93 -0.34 0.55 16 23 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.04 0.67 6.36 -51.93 -0.33 0.34 16 25 H 0.01 0.24 6.13 -51.93 -0.32 -0.08 16 26 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 27 H 0.27 8.13 7.22 -40.82 -0.29 7.83 16 28 H 0.07 1.44 4.92 -51.93 -0.26 1.19 16 29 H 0.03 0.45 7.11 -51.93 -0.37 0.08 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.04 7.24 -51.93 -0.38 0.66 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.92 7.46 -51.93 -0.39 0.53 16 36 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.96 5.20 -51.93 -0.27 0.69 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -30.25 282.08 -7.35 -37.60 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.17 Total: -0.91 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 0.10 Total: -17.01 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: -0.11 Total: -37.91 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.34 Total: -6.64 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.25 -7.35 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds