Wall clock time and date at job start Mon Mar 30 2020 03:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47453 * 2 1 4 4 C 1.53008 * 109.47193 * 119.99948 * 2 1 3 5 5 C 1.50701 * 109.47057 * 184.12059 * 4 2 1 6 6 H 1.08002 * 119.99769 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99735 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00555 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99888 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47143 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.46828 * 60.00633 * 9 7 5 12 12 H 1.48496 * 109.47304 * 300.00578 * 9 7 5 13 13 N 1.46899 * 109.47100 * 239.99764 * 2 1 3 14 14 C 1.44012 * 111.00365 * 306.53563 * 13 2 1 15 15 C 1.54612 * 112.48682 * 217.17657 * 14 13 2 16 16 C 1.54579 * 110.90324 * 319.60990 * 15 14 13 17 17 O 1.39907 * 113.22025 * 319.28055 * 16 15 14 18 18 C 1.44526 * 112.80498 * 94.90144 * 17 16 15 19 19 C 1.46265 * 111.30799 * 280.44994 * 18 17 16 20 20 H 1.08994 * 108.84292 * 298.81297 * 19 18 17 21 21 C 1.52993 * 108.91643 * 180.21717 * 19 18 17 22 22 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47116 * 300.00068 * 1 2 3 24 24 H 1.08993 * 109.47081 * 60.00143 * 1 2 3 25 25 H 1.08995 * 109.47180 * 64.11975 * 4 2 1 26 26 H 1.09001 * 109.47010 * 304.12087 * 4 2 1 27 27 H 0.97006 * 119.99235 * 359.97438 * 8 7 5 28 28 H 1.09003 * 108.87549 * 337.94897 * 14 13 2 29 29 H 1.08996 * 108.87945 * 96.39175 * 14 13 2 30 30 H 1.08996 * 109.19408 * 199.24186 * 15 14 13 31 31 H 1.09004 * 109.15267 * 79.94635 * 15 14 13 32 32 H 1.09004 * 108.73152 * 198.32273 * 16 15 14 33 33 H 1.08993 * 108.63963 * 80.18546 * 16 15 14 34 34 H 1.08995 * 109.11326 * 159.97891 * 18 17 16 35 35 H 1.09001 * 109.06185 * 40.88345 * 18 17 16 36 36 H 1.09004 * 109.47578 * 297.20785 * 21 19 18 37 37 H 1.09006 * 109.46769 * 57.20358 * 21 19 18 38 38 H 1.08992 * 109.47851 * 177.20577 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5436 -0.6334 1.3014 6 1 4.0815 -0.1147 0.5217 7 6 4.2323 -1.2144 2.3450 8 7 3.5772 -1.8457 3.2947 9 14 6.0960 -1.1062 2.4092 10 1 6.5911 -1.8062 3.6218 11 1 6.5077 0.3199 2.4576 12 1 6.6711 -1.7466 1.1991 13 7 2.0196 -0.6925 -1.1994 14 6 1.4371 -2.0048 -1.3117 15 6 2.4350 -3.0496 -1.8621 16 6 3.2913 -2.4486 -3.0001 17 8 2.5588 -1.6340 -3.8703 18 6 2.6294 -0.2337 -3.5196 19 6 1.7194 0.0854 -2.4198 20 1 0.6983 -0.1305 -2.7340 21 6 1.8340 1.5767 -2.0980 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.7383 -1.7680 1.2132 26 1 1.6176 -0.2518 2.1377 27 1 2.6094 -1.9022 3.2611 28 1 1.0980 -2.3256 -0.3267 29 1 0.5769 -1.9528 -1.9790 30 1 1.8814 -3.9070 -2.2448 31 1 3.0906 -3.3776 -1.0553 32 1 3.7340 -3.2635 -3.5728 33 1 4.0926 -1.8568 -2.5577 34 1 2.3619 0.3660 -4.3895 35 1 3.6494 0.0072 -3.2201 36 1 2.8461 1.7987 -1.7595 37 1 1.6142 2.1593 -2.9927 38 1 1.1235 1.8347 -1.3128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695815546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:53 Heat of formation + Delta-G solvation = -61.767637 kcal Electronic energy + Delta-G solvation = -17439.630432 eV Core-core repulsion = 14895.382780 eV Total energy + Delta-G solvation = -2544.247652 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.22070 -38.40370 -35.51896 -34.50547 -33.02231 -29.92053 -28.94942 -27.67316 -25.79832 -25.07153 -22.78380 -21.89429 -19.90033 -18.70267 -17.91738 -17.48781 -16.70342 -16.15115 -15.63350 -15.44402 -15.17998 -15.04880 -14.50453 -13.70257 -13.60836 -13.43860 -13.18763 -12.93124 -12.80198 -12.63835 -12.61092 -12.49348 -12.31694 -11.93778 -11.75134 -11.46872 -11.34366 -11.13135 -10.59779 -10.50943 -10.39205 -9.01904 -8.54209 -6.19516 1.53422 1.61972 1.80326 2.62388 2.95140 2.96400 3.30107 3.90378 4.01759 4.05972 4.18857 4.22081 4.28175 4.31033 4.44019 4.47398 4.57589 4.66455 4.71885 4.77652 4.85937 4.94237 4.96057 5.04384 5.05862 5.10287 5.10713 5.20304 5.26248 5.32381 5.56402 6.13304 6.31182 6.34672 6.40539 6.44293 6.75378 7.57649 8.86374 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.024677 B = 0.009997 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.372729 B = 2800.216491 C = 3141.294686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.096 3.904 3 H 0.082 0.918 4 C 0.020 3.980 5 C -0.569 4.569 6 H 0.050 0.950 7 C -0.046 4.046 8 N -0.950 5.950 9 Si 1.111 2.889 10 H -0.290 1.290 11 H -0.271 1.271 12 H -0.273 1.273 13 N -0.516 5.516 14 C 0.066 3.934 15 C -0.137 4.137 16 C 0.076 3.924 17 O -0.387 6.387 18 C 0.068 3.932 19 C 0.045 3.955 20 H 0.047 0.953 21 C -0.151 4.151 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.069 0.931 25 H -0.012 1.012 26 H -0.015 1.015 27 H 0.251 0.749 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.118 0.882 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 3.904 -13.897 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.012 4.012 3 H 0.100 0.900 4 C -0.017 4.017 5 C -0.607 4.607 6 H 0.068 0.932 7 C -0.242 4.242 8 N -0.590 5.590 9 Si 0.934 3.066 10 H -0.216 1.216 11 H -0.196 1.196 12 H -0.199 1.199 13 N -0.240 5.240 14 C -0.063 4.063 15 C -0.176 4.176 16 C -0.002 4.002 17 O -0.305 6.305 18 C -0.008 4.008 19 C -0.063 4.063 20 H 0.065 0.935 21 C -0.208 4.208 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.006 0.994 26 H 0.003 0.997 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.136 0.864 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.637 3.370 -13.141 13.665 hybrid contribution -2.294 0.239 -0.030 2.307 sum -3.931 3.609 -13.172 14.212 Atomic orbital electron populations 1.22487 0.97366 1.01463 1.02181 1.21685 0.91698 0.98142 0.89669 0.90047 1.19247 0.96265 0.93791 0.92399 1.22205 0.92766 1.36448 1.09278 0.93169 1.27181 1.10697 0.93514 0.92768 1.70931 1.09150 1.43366 1.35526 0.82993 0.70155 0.77218 0.76190 1.21555 1.19602 1.19895 1.61604 1.59021 1.01989 1.01415 1.21713 0.95320 0.90320 0.98949 1.22627 0.98896 0.97947 0.98096 1.22085 0.92897 0.94437 0.90737 1.87644 1.73640 1.17998 1.51214 1.21899 0.99395 0.81995 0.97494 1.21331 0.98655 0.95111 0.91214 0.93534 1.22049 1.02511 0.93469 1.02808 0.93556 0.92449 0.91192 0.99419 0.99650 0.93986 0.93754 0.94494 0.90658 0.93134 0.89271 0.94023 0.86416 0.92783 0.92691 0.89516 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.88 8.24 71.98 0.59 -5.28 16 2 C 0.10 3.84 1.73 44.92 0.08 3.92 16 3 H 0.08 3.25 5.68 -2.39 -0.01 3.24 16 4 C 0.02 1.03 3.67 29.85 0.11 1.14 16 5 C -0.57 -32.20 8.82 25.60 0.23 -31.97 16 6 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 7 C -0.05 -2.70 5.46 84.65 0.46 -2.24 16 8 N -0.95 -60.03 13.65 21.45 0.29 -59.74 16 9 Si 1.11 51.76 29.90 68.60 2.05 53.81 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 N -0.52 -19.20 3.87 -859.84 -3.33 -22.53 16 14 C 0.07 2.43 3.82 87.39 0.33 2.77 16 15 C -0.14 -4.71 6.52 31.68 0.21 -4.51 16 16 C 0.08 2.38 6.20 72.52 0.45 2.83 16 17 O -0.39 -11.72 10.39 -139.86 -1.45 -13.17 16 18 C 0.07 1.83 5.55 69.91 0.39 2.21 16 19 C 0.04 1.30 1.70 42.66 0.07 1.37 16 20 H 0.05 1.33 6.90 -2.39 -0.02 1.32 16 21 C -0.15 -3.80 7.79 71.98 0.56 -3.24 16 22 H 0.05 1.58 6.57 -2.39 -0.02 1.57 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.07 1.97 6.36 -2.39 -0.02 1.95 16 25 H -0.01 -0.69 6.13 -2.39 -0.01 -0.70 16 26 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 27 H 0.25 16.08 7.22 -92.70 -0.67 15.41 16 28 H 0.04 1.85 4.92 -2.39 -0.01 1.84 16 29 H 0.04 1.26 7.11 -2.39 -0.02 1.24 16 30 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 31 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.43 7.24 -2.39 -0.02 1.41 16 34 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.05 1.53 7.46 -2.39 -0.02 1.51 16 36 H 0.05 1.54 8.06 -2.38 -0.02 1.52 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.06 1.63 5.20 -2.39 -0.01 1.61 16 Total: -1.00 -65.69 282.08 2.17 -63.53 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.12 Total: 11.10 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 3.48 Total: -33.00 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -3.03 Total: -82.27 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -1.45 Total: -13.17 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.81 kcal Total: -65.69 2.17 -63.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695815546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.761 kcal (2) G-P(sol) polarization free energy of solvation -65.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds