Wall clock time and date at job start Mon Mar 30 2020 02:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47279 * 2 1 4 4 C 1.53001 * 109.47426 * 240.00326 * 2 1 3 5 5 C 1.50702 * 109.47238 * 175.00034 * 4 2 1 6 6 H 1.07997 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00036 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99978 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47296 * 119.99860 * 9 7 5 12 12 H 1.48502 * 109.46867 * 239.99919 * 9 7 5 13 13 N 1.46900 * 109.47255 * 120.00196 * 2 1 3 14 14 C 1.46906 * 110.99705 * 275.00130 * 13 2 1 15 15 C 1.53005 * 109.47037 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.89329 * 305.51867 * 15 14 13 17 17 C 1.54378 * 109.82837 * 184.59090 * 15 14 13 18 18 C 1.55309 * 102.25014 * 219.13100 * 17 15 14 19 19 C 1.54944 * 100.94264 * 34.13276 * 18 17 15 20 20 H 1.08994 * 110.31231 * 82.47388 * 19 18 17 21 21 C 1.53001 * 110.31101 * 204.64479 * 19 18 17 22 22 O 1.43236 * 109.82846 * 66.45581 * 15 14 13 23 23 H 1.08994 * 109.47245 * 299.99662 * 1 2 3 24 24 H 1.09006 * 109.47144 * 60.00181 * 1 2 3 25 25 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47156 * 294.99763 * 4 2 1 27 27 H 1.08997 * 109.47117 * 54.99726 * 4 2 1 28 28 H 0.96996 * 120.00228 * 180.02562 * 8 7 5 29 29 H 1.00897 * 111.00159 * 38.94846 * 13 2 1 30 30 H 1.09000 * 109.47218 * 59.99725 * 14 13 2 31 31 H 1.09005 * 109.47122 * 299.99727 * 14 13 2 32 32 H 1.08997 * 110.85123 * 100.93782 * 17 15 14 33 33 H 1.09005 * 111.02275 * 337.39100 * 17 15 14 34 34 H 1.09000 * 111.12311 * 276.21255 * 18 17 15 35 35 H 1.09000 * 111.12934 * 152.05131 * 18 17 15 36 36 H 1.08993 * 109.47445 * 177.16540 * 21 19 18 37 37 H 1.09007 * 109.46630 * 297.16586 * 21 19 18 38 38 H 1.08999 * 109.47435 * 57.16065 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3578 8 7 3.5766 -1.8385 -3.2990 9 14 6.0922 -1.0621 -2.4360 10 1 6.5838 -0.2917 -1.2655 11 1 6.6856 -2.4233 -2.4178 12 1 6.4872 -0.3666 -3.6872 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5332 3.5745 16 1 1.9792 -1.4150 3.7510 17 6 2.5554 0.3894 4.8117 18 6 3.8684 0.0088 5.5488 19 6 4.8005 -0.2979 4.3497 20 1 5.2211 0.6254 3.9516 21 6 5.9185 -1.2514 4.7763 22 8 3.9575 -0.9248 3.3700 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7517 -1.7715 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0610 -2.2458 -4.0340 29 1 1.4495 -1.4979 1.4100 30 1 1.0870 0.6163 2.5525 31 1 2.7588 1.0462 2.1182 32 1 1.6855 0.1708 5.4310 33 1 2.5661 1.4389 4.5174 34 1 3.7271 -0.8740 6.1723 35 1 4.2462 0.8458 6.1359 36 1 6.5357 -1.4974 3.9124 37 1 6.5338 -0.7720 5.5378 38 1 5.4824 -2.1638 5.1831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:00 Heat of formation + Delta-G solvation = -63.692549 kcal Electronic energy + Delta-G solvation = -16300.971655 eV Core-core repulsion = 13756.640532 eV Total energy + Delta-G solvation = -2544.331123 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.46870 -36.51087 -32.97717 -32.11073 -31.88523 -29.83817 -27.17162 -26.40800 -23.37609 -22.54661 -21.43368 -20.42700 -19.49859 -16.79005 -16.13556 -15.71874 -14.95109 -14.39118 -14.16252 -13.89633 -13.64291 -13.17777 -12.80289 -12.43345 -12.29857 -11.93568 -11.76859 -11.62170 -11.46774 -11.37320 -11.21081 -10.84141 -10.72338 -10.71000 -10.41464 -10.24191 -9.94796 -9.30638 -9.04579 -8.83893 -8.14580 -7.38690 -5.76773 -3.72926 3.46617 3.53331 3.60675 3.94301 4.52074 4.67686 4.70568 4.76519 5.06336 5.21363 5.36897 5.44220 5.58214 5.60007 5.61239 5.67347 5.68307 5.73570 5.80734 5.91551 5.98580 6.01022 6.10685 6.17872 6.26111 6.40182 6.51642 6.70263 7.12478 7.40484 7.67617 7.81670 8.14381 8.20063 8.30474 8.73269 9.32994 9.87857 11.35728 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.007961 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.108829 B = 3516.377980 C = 4639.157936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.089 3.911 3 H 0.062 0.938 4 C 0.033 3.967 5 C -0.481 4.481 6 H 0.059 0.941 7 C 0.047 3.953 8 N -0.907 5.907 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.289 1.289 13 N -0.655 5.655 14 C 0.052 3.948 15 C 0.086 3.914 16 H 0.073 0.927 17 C -0.152 4.152 18 C -0.151 4.151 19 C 0.071 3.929 20 H 0.066 0.934 21 C -0.149 4.149 22 O -0.348 6.348 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.255 0.745 29 H 0.329 0.671 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.251 4.278 17.527 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.078 0.922 7 C -0.151 4.151 8 N -0.549 5.549 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.216 1.216 13 N -0.284 5.284 14 C -0.079 4.079 15 C 0.028 3.972 16 H 0.091 0.909 17 C -0.190 4.190 18 C -0.189 4.189 19 C 0.013 3.987 20 H 0.084 0.916 21 C -0.207 4.207 22 O -0.267 6.267 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.146 0.854 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.472 4.134 17.040 17.596 hybrid contribution -0.061 0.264 0.230 0.355 sum -1.533 4.398 17.270 17.887 Atomic orbital electron populations 1.22568 0.99743 1.01126 1.00451 1.21802 0.89648 0.98103 0.92525 0.91979 1.19117 0.96314 0.95373 0.89654 1.21212 0.91902 1.32322 1.06486 0.92233 1.25000 0.97931 0.96056 0.96121 1.69981 1.34976 1.37404 1.12542 0.86573 0.86686 0.77537 0.77422 1.19808 1.21357 1.21585 1.60435 1.57597 1.08162 1.02216 1.22349 0.98012 0.96237 0.91255 1.22713 0.84798 0.96399 0.93274 0.90897 1.23153 0.98368 1.00715 0.96737 1.23316 0.95414 1.01997 0.98180 1.22938 0.91976 0.96010 0.87791 0.91596 1.21857 0.97824 0.99464 1.01534 1.88678 1.15996 1.69246 1.52741 0.94571 0.92546 0.93053 0.96533 0.96600 0.93547 0.85386 0.95759 0.91086 0.90445 0.90495 0.90571 0.90415 0.91599 0.91813 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 9.16 37.15 0.34 -2.78 16 2 C 0.09 1.88 2.53 -67.71 -0.17 1.70 16 3 H 0.06 1.35 7.80 -51.93 -0.40 0.94 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.48 -14.25 8.84 -34.44 -0.30 -14.56 16 6 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.91 -28.53 13.29 55.43 0.74 -27.80 16 9 Si 0.89 23.18 29.54 -169.99 -5.02 18.16 16 10 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 N -0.65 -13.04 5.94 -106.72 -0.63 -13.68 16 14 C 0.05 0.84 5.02 -3.82 -0.02 0.82 16 15 C 0.09 1.25 3.71 -26.01 -0.10 1.15 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.15 -1.63 6.54 -24.78 -0.16 -1.80 16 18 C -0.15 -1.55 6.57 -24.48 -0.16 -1.71 16 19 C 0.07 0.94 4.08 -25.70 -0.10 0.84 16 20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 21 C -0.15 -1.76 9.62 37.16 0.36 -1.40 16 22 O -0.35 -6.06 10.67 -35.23 -0.38 -6.43 16 23 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.33 6.13 8.47 -39.29 -0.33 5.80 16 30 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 31 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 34 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -32.79 307.66 -8.15 -40.95 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.95 Total: -0.18 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.55 Total: -15.65 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.10 Total: -41.47 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.38 Total: -6.43 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.79 -8.15 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.746 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds