Wall clock time and date at job start Mon Mar 30 2020 02:55:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47279 * 2 1
4 4 C 1.53001 * 109.47426 * 240.00326 * 2 1 3
5 5 C 1.50702 * 109.47238 * 175.00034 * 4 2 1
6 6 H 1.07997 * 120.00276 * 359.97438 * 5 4 2
7 7 C 1.37880 * 120.00036 * 179.97438 * 5 4 2
8 8 N 1.31518 * 119.99956 * 359.97438 * 7 5 4
9 9 Si 1.86794 * 119.99978 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.47183 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47296 * 119.99860 * 9 7 5
12 12 H 1.48502 * 109.46867 * 239.99919 * 9 7 5
13 13 N 1.46900 * 109.47255 * 120.00196 * 2 1 3
14 14 C 1.46906 * 110.99705 * 275.00130 * 13 2 1
15 15 C 1.53005 * 109.47037 * 179.97438 * 14 13 2
16 16 H 1.09000 * 109.89329 * 305.51867 * 15 14 13
17 17 C 1.54378 * 109.82837 * 184.59090 * 15 14 13
18 18 C 1.55309 * 102.25014 * 219.13100 * 17 15 14
19 19 C 1.54944 * 100.94264 * 34.13276 * 18 17 15
20 20 H 1.08994 * 110.31231 * 82.47388 * 19 18 17
21 21 C 1.53001 * 110.31101 * 204.64479 * 19 18 17
22 22 O 1.43236 * 109.82846 * 66.45581 * 15 14 13
23 23 H 1.08994 * 109.47245 * 299.99662 * 1 2 3
24 24 H 1.09006 * 109.47144 * 60.00181 * 1 2 3
25 25 H 1.09006 * 109.46808 * 179.97438 * 1 2 3
26 26 H 1.09005 * 109.47156 * 294.99763 * 4 2 1
27 27 H 1.08997 * 109.47117 * 54.99726 * 4 2 1
28 28 H 0.96996 * 120.00228 * 180.02562 * 8 7 5
29 29 H 1.00897 * 111.00159 * 38.94846 * 13 2 1
30 30 H 1.09000 * 109.47218 * 59.99725 * 14 13 2
31 31 H 1.09005 * 109.47122 * 299.99727 * 14 13 2
32 32 H 1.08997 * 110.85123 * 100.93782 * 17 15 14
33 33 H 1.09005 * 111.02275 * 337.39100 * 17 15 14
34 34 H 1.09000 * 111.12311 * 276.21255 * 18 17 15
35 35 H 1.09000 * 111.12934 * 152.05131 * 18 17 15
36 36 H 1.08993 * 109.47445 * 177.16540 * 21 19 18
37 37 H 1.09007 * 109.46630 * 297.16586 * 21 19 18
38 38 H 1.08999 * 109.47435 * 57.16065 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5419 -0.6148 -1.3127
6 1 4.0790 -0.0854 -0.5396
7 6 4.2305 -1.1934 -2.3578
8 7 3.5766 -1.8385 -3.2990
9 14 6.0922 -1.0621 -2.4360
10 1 6.5838 -0.2917 -1.2655
11 1 6.6856 -2.4233 -2.4178
12 1 6.4872 -0.3666 -3.6872
13 7 2.0196 -0.6925 1.1994
14 6 2.0824 0.2226 2.3469
15 6 2.5950 -0.5332 3.5745
16 1 1.9792 -1.4150 3.7510
17 6 2.5554 0.3894 4.8117
18 6 3.8684 0.0088 5.5488
19 6 4.8005 -0.2979 4.3497
20 1 5.2211 0.6254 3.9516
21 6 5.9185 -1.2514 4.7763
22 8 3.9575 -0.9248 3.3700
23 1 -0.3633 0.5137 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 1.7517 -1.7715 -1.2057
27 1 1.6054 -0.2617 -2.1370
28 1 4.0610 -2.2458 -4.0340
29 1 1.4495 -1.4979 1.4100
30 1 1.0870 0.6163 2.5525
31 1 2.7588 1.0462 2.1182
32 1 1.6855 0.1708 5.4310
33 1 2.5661 1.4389 4.5174
34 1 3.7271 -0.8740 6.1723
35 1 4.2462 0.8458 6.1359
36 1 6.5357 -1.4974 3.9124
37 1 6.5338 -0.7720 5.5378
38 1 5.4824 -2.1638 5.1831
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695843202.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:00
Heat of formation + Delta-G solvation = -63.692549 kcal
Electronic energy + Delta-G solvation = -16300.971655 eV
Core-core repulsion = 13756.640532 eV
Total energy + Delta-G solvation = -2544.331123 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-39.46870 -36.51087 -32.97717 -32.11073 -31.88523 -29.83817 -27.17162 -26.40800
-23.37609 -22.54661 -21.43368 -20.42700 -19.49859 -16.79005 -16.13556 -15.71874
-14.95109 -14.39118 -14.16252 -13.89633 -13.64291 -13.17777 -12.80289 -12.43345
-12.29857 -11.93568 -11.76859 -11.62170 -11.46774 -11.37320 -11.21081 -10.84141
-10.72338 -10.71000 -10.41464 -10.24191 -9.94796 -9.30638 -9.04579 -8.83893
-8.14580 -7.38690 -5.76773 -3.72926 3.46617 3.53331 3.60675 3.94301
4.52074 4.67686 4.70568 4.76519 5.06336 5.21363 5.36897 5.44220
5.58214 5.60007 5.61239 5.67347 5.68307 5.73570 5.80734 5.91551
5.98580 6.01022 6.10685 6.17872 6.26111 6.40182 6.51642 6.70263
7.12478 7.40484 7.67617 7.81670 8.14381 8.20063 8.30474 8.73269
9.32994 9.87857 11.35728
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.021465 B = 0.007961 C = 0.006034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1304.108829 B = 3516.377980 C = 4639.157936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.089 3.911
3 H 0.062 0.938
4 C 0.033 3.967
5 C -0.481 4.481
6 H 0.059 0.941
7 C 0.047 3.953
8 N -0.907 5.907
9 Si 0.889 3.111
10 H -0.273 1.273
11 H -0.287 1.287
12 H -0.289 1.289
13 N -0.655 5.655
14 C 0.052 3.948
15 C 0.086 3.914
16 H 0.073 0.927
17 C -0.152 4.152
18 C -0.151 4.151
19 C 0.071 3.929
20 H 0.066 0.934
21 C -0.149 4.149
22 O -0.348 6.348
23 H 0.035 0.965
24 H 0.055 0.945
25 H 0.050 0.950
26 H 0.016 0.984
27 H 0.016 0.984
28 H 0.255 0.745
29 H 0.329 0.671
30 H 0.025 0.975
31 H 0.071 0.929
32 H 0.077 0.923
33 H 0.076 0.924
34 H 0.076 0.924
35 H 0.077 0.923
36 H 0.065 0.935
37 H 0.063 0.937
38 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.251 4.278 17.527 18.182
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C -0.021 4.021
3 H 0.080 0.920
4 C -0.005 4.005
5 C -0.519 4.519
6 H 0.078 0.922
7 C -0.151 4.151
8 N -0.549 5.549
9 Si 0.718 3.282
10 H -0.198 1.198
11 H -0.214 1.214
12 H -0.216 1.216
13 N -0.284 5.284
14 C -0.079 4.079
15 C 0.028 3.972
16 H 0.091 0.909
17 C -0.190 4.190
18 C -0.189 4.189
19 C 0.013 3.987
20 H 0.084 0.916
21 C -0.207 4.207
22 O -0.267 6.267
23 H 0.054 0.946
24 H 0.075 0.925
25 H 0.069 0.931
26 H 0.035 0.965
27 H 0.034 0.966
28 H 0.065 0.935
29 H 0.146 0.854
30 H 0.042 0.958
31 H 0.089 0.911
32 H 0.096 0.904
33 H 0.095 0.905
34 H 0.094 0.906
35 H 0.096 0.904
36 H 0.084 0.916
37 H 0.082 0.918
38 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.472 4.134 17.040 17.596
hybrid contribution -0.061 0.264 0.230 0.355
sum -1.533 4.398 17.270 17.887
Atomic orbital electron populations
1.22568 0.99743 1.01126 1.00451 1.21802 0.89648 0.98103 0.92525
0.91979 1.19117 0.96314 0.95373 0.89654 1.21212 0.91902 1.32322
1.06486 0.92233 1.25000 0.97931 0.96056 0.96121 1.69981 1.34976
1.37404 1.12542 0.86573 0.86686 0.77537 0.77422 1.19808 1.21357
1.21585 1.60435 1.57597 1.08162 1.02216 1.22349 0.98012 0.96237
0.91255 1.22713 0.84798 0.96399 0.93274 0.90897 1.23153 0.98368
1.00715 0.96737 1.23316 0.95414 1.01997 0.98180 1.22938 0.91976
0.96010 0.87791 0.91596 1.21857 0.97824 0.99464 1.01534 1.88678
1.15996 1.69246 1.52741 0.94571 0.92546 0.93053 0.96533 0.96600
0.93547 0.85386 0.95759 0.91086 0.90445 0.90495 0.90571 0.90415
0.91599 0.91813 0.92170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.13 9.16 37.15 0.34 -2.78 16
2 C 0.09 1.88 2.53 -67.71 -0.17 1.70 16
3 H 0.06 1.35 7.80 -51.93 -0.40 0.94 16
4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16
5 C -0.48 -14.25 8.84 -34.44 -0.30 -14.56 16
6 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16
7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16
8 N -0.91 -28.53 13.29 55.43 0.74 -27.80 16
9 Si 0.89 23.18 29.54 -169.99 -5.02 18.16 16
10 H -0.27 -7.05 7.11 56.52 0.40 -6.65 16
11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16
12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
13 N -0.65 -13.04 5.94 -106.72 -0.63 -13.68 16
14 C 0.05 0.84 5.02 -3.82 -0.02 0.82 16
15 C 0.09 1.25 3.71 -26.01 -0.10 1.15 16
16 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
17 C -0.15 -1.63 6.54 -24.78 -0.16 -1.80 16
18 C -0.15 -1.55 6.57 -24.48 -0.16 -1.71 16
19 C 0.07 0.94 4.08 -25.70 -0.10 0.84 16
20 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
21 C -0.15 -1.76 9.62 37.16 0.36 -1.40 16
22 O -0.35 -6.06 10.67 -35.23 -0.38 -6.43 16
23 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16
24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
25 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16
26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
28 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
29 H 0.33 6.13 8.47 -39.29 -0.33 5.80 16
30 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16
31 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16
32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16
34 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16
35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
LS Contribution 307.66 15.07 4.64 4.64
Total: -1.00 -32.79 307.66 -8.15 -40.95
By element:
Atomic # 1 Polarization: 6.76 SS G_CDS: -6.95 Total: -0.18 kcal
Atomic # 6 Polarization: -15.10 SS G_CDS: -0.55 Total: -15.65 kcal
Atomic # 7 Polarization: -41.58 SS G_CDS: 0.10 Total: -41.47 kcal
Atomic # 8 Polarization: -6.06 SS G_CDS: -0.38 Total: -6.43 kcal
Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal
Total LS contribution 4.64 Total: 4.64 kcal
Total: -32.79 -8.15 -40.95 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695843202.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.746 kcal
(2) G-P(sol) polarization free energy of solvation -32.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.693 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds