Wall clock time and date at job start Mon Mar 30 2020 02:54:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09004 * 109.47279 * 2 1
4 4 C 1.53001 * 109.47426 * 240.00326 * 2 1 3
5 5 C 1.50702 * 109.47238 * 175.00034 * 4 2 1
6 6 H 1.07997 * 120.00276 * 359.97438 * 5 4 2
7 7 C 1.37880 * 120.00036 * 179.97438 * 5 4 2
8 8 N 1.31518 * 119.99956 * 359.97438 * 7 5 4
9 9 Si 1.86794 * 119.99978 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.47183 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47296 * 119.99860 * 9 7 5
12 12 H 1.48502 * 109.46867 * 239.99919 * 9 7 5
13 13 N 1.46900 * 109.47255 * 120.00196 * 2 1 3
14 14 C 1.46906 * 110.99705 * 275.00130 * 13 2 1
15 15 C 1.53005 * 109.47037 * 179.97438 * 14 13 2
16 16 H 1.09000 * 109.89329 * 305.51867 * 15 14 13
17 17 C 1.54378 * 109.82837 * 184.59090 * 15 14 13
18 18 C 1.55309 * 102.25014 * 219.13100 * 17 15 14
19 19 C 1.54944 * 100.94264 * 34.13276 * 18 17 15
20 20 H 1.08994 * 110.31231 * 82.47388 * 19 18 17
21 21 C 1.53001 * 110.31101 * 204.64479 * 19 18 17
22 22 O 1.43236 * 109.82846 * 66.45581 * 15 14 13
23 23 H 1.08994 * 109.47245 * 299.99662 * 1 2 3
24 24 H 1.09006 * 109.47144 * 60.00181 * 1 2 3
25 25 H 1.09006 * 109.46808 * 179.97438 * 1 2 3
26 26 H 1.09005 * 109.47156 * 294.99763 * 4 2 1
27 27 H 1.08997 * 109.47117 * 54.99726 * 4 2 1
28 28 H 0.96996 * 120.00228 * 180.02562 * 8 7 5
29 29 H 1.00897 * 111.00159 * 38.94846 * 13 2 1
30 30 H 1.09000 * 109.47218 * 59.99725 * 14 13 2
31 31 H 1.09005 * 109.47122 * 299.99727 * 14 13 2
32 32 H 1.08997 * 110.85123 * 100.93782 * 17 15 14
33 33 H 1.09005 * 111.02275 * 337.39100 * 17 15 14
34 34 H 1.09000 * 111.12311 * 276.21255 * 18 17 15
35 35 H 1.09000 * 111.12934 * 152.05131 * 18 17 15
36 36 H 1.08993 * 109.47445 * 177.16540 * 21 19 18
37 37 H 1.09007 * 109.46630 * 297.16586 * 21 19 18
38 38 H 1.08999 * 109.47435 * 57.16065 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5419 -0.6148 -1.3127
6 1 4.0790 -0.0854 -0.5396
7 6 4.2305 -1.1934 -2.3578
8 7 3.5766 -1.8385 -3.2990
9 14 6.0922 -1.0621 -2.4360
10 1 6.5838 -0.2917 -1.2655
11 1 6.6856 -2.4233 -2.4178
12 1 6.4872 -0.3666 -3.6872
13 7 2.0196 -0.6925 1.1994
14 6 2.0824 0.2226 2.3469
15 6 2.5950 -0.5332 3.5745
16 1 1.9792 -1.4150 3.7510
17 6 2.5554 0.3894 4.8117
18 6 3.8684 0.0088 5.5488
19 6 4.8005 -0.2979 4.3497
20 1 5.2211 0.6254 3.9516
21 6 5.9185 -1.2514 4.7763
22 8 3.9575 -0.9248 3.3700
23 1 -0.3633 0.5137 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 -0.3633 -1.0277 -0.0005
26 1 1.7517 -1.7715 -1.2057
27 1 1.6054 -0.2617 -2.1370
28 1 4.0610 -2.2458 -4.0340
29 1 1.4495 -1.4979 1.4100
30 1 1.0870 0.6163 2.5525
31 1 2.7588 1.0462 2.1182
32 1 1.6855 0.1708 5.4310
33 1 2.5661 1.4389 4.5174
34 1 3.7271 -0.8740 6.1723
35 1 4.2462 0.8458 6.1359
36 1 6.5357 -1.4974 3.9124
37 1 6.5338 -0.7720 5.5378
38 1 5.4824 -2.1638 5.1831
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695843202.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:54
Heat of formation + Delta-G solvation = -86.220229 kcal
Electronic energy + Delta-G solvation = -16301.948528 eV
Core-core repulsion = 13756.640532 eV
Total energy + Delta-G solvation = -2545.307996 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.54173 -38.11710 -34.93662 -33.45799 -33.08468 -31.22604 -29.14095 -27.58217
-25.13625 -24.03004 -22.43119 -21.58866 -21.14944 -18.39247 -17.82321 -16.89603
-16.57386 -16.29202 -15.61416 -15.08413 -14.87942 -14.53457 -14.09096 -13.83217
-13.62798 -13.45537 -13.23605 -13.21220 -12.82797 -12.63699 -12.59995 -12.46546
-12.37764 -11.97932 -11.74034 -11.67909 -11.62649 -11.11139 -11.07586 -10.49219
-10.31901 -8.90288 -8.10077 -6.13964 1.37756 1.39692 1.53307 2.47165
2.92915 3.22129 3.46425 3.64951 3.89474 3.94964 4.19705 4.26092
4.33590 4.41325 4.51178 4.52978 4.57605 4.65423 4.70555 4.82363
4.91047 4.94164 4.96425 5.08592 5.17891 5.23484 5.27724 5.30923
5.37077 5.50202 5.68626 5.90414 6.31118 6.37812 6.56031 6.79029
6.99824 7.51131 9.02428
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.021465 B = 0.007961 C = 0.006034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1304.108829 B = 3516.377980 C = 4639.157936
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.098 3.902
3 H 0.054 0.946
4 C 0.037 3.963
5 C -0.495 4.495
6 H 0.050 0.950
7 C -0.008 4.008
8 N -0.941 5.941
9 Si 0.956 3.044
10 H -0.270 1.270
11 H -0.282 1.282
12 H -0.277 1.277
13 N -0.680 5.680
14 C 0.056 3.944
15 C 0.081 3.919
16 H 0.077 0.923
17 C -0.143 4.143
18 C -0.139 4.139
19 C 0.056 3.944
20 H 0.056 0.944
21 C -0.146 4.146
22 O -0.392 6.392
23 H 0.067 0.933
24 H 0.056 0.944
25 H 0.053 0.947
26 H -0.011 1.011
27 H -0.007 1.007
28 H 0.259 0.741
29 H 0.334 0.666
30 H 0.052 0.948
31 H 0.052 0.948
32 H 0.103 0.897
33 H 0.081 0.919
34 H 0.086 0.914
35 H 0.102 0.898
36 H 0.042 0.958
37 H 0.092 0.908
38 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.256 5.099 19.773 20.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.011 4.011
3 H 0.072 0.928
4 C 0.000 4.000
5 C -0.533 4.533
6 H 0.068 0.932
7 C -0.203 4.203
8 N -0.584 5.584
9 Si 0.782 3.218
10 H -0.195 1.195
11 H -0.208 1.208
12 H -0.203 1.203
13 N -0.311 5.311
14 C -0.073 4.073
15 C 0.023 3.977
16 H 0.095 0.905
17 C -0.181 4.181
18 C -0.176 4.176
19 C -0.002 4.002
20 H 0.074 0.926
21 C -0.204 4.204
22 O -0.312 6.312
23 H 0.086 0.914
24 H 0.075 0.925
25 H 0.072 0.928
26 H 0.008 0.992
27 H 0.011 0.989
28 H 0.067 0.933
29 H 0.152 0.848
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.121 0.879
33 H 0.100 0.900
34 H 0.105 0.895
35 H 0.120 0.880
36 H 0.061 0.939
37 H 0.110 0.890
38 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -1.483 4.966 19.302 19.985
hybrid contribution -0.052 -0.002 -0.479 0.482
sum -1.535 4.964 18.823 19.527
Atomic orbital electron populations
1.22400 0.96448 1.01798 1.02008 1.21459 0.92221 0.96577 0.90886
0.92780 1.19008 0.95016 0.94165 0.91843 1.21490 0.93554 1.32075
1.06183 0.93201 1.25855 1.02931 0.95738 0.95810 1.70096 1.36933
1.38195 1.13168 0.85522 0.80736 0.77716 0.77787 1.19490 1.20812
1.20292 1.60252 1.58292 1.09330 1.03181 1.22368 0.99074 0.95247
0.90625 1.22842 0.83728 0.97229 0.93921 0.90548 1.23137 0.99744
1.00015 0.95185 1.23279 0.94028 1.03354 0.96976 1.23189 0.92630
0.95737 0.88597 0.92583 1.21861 0.97473 0.99665 1.01359 1.88633
1.17694 1.70157 1.54731 0.91421 0.92508 0.92838 0.99231 0.98882
0.93256 0.84777 0.93026 0.92975 0.87885 0.90034 0.89542 0.87993
0.93850 0.88970 0.91957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.60 9.16 71.98 0.66 -4.94 16
2 C 0.10 4.19 2.53 44.91 0.11 4.30 16
3 H 0.05 2.36 7.80 -2.38 -0.02 2.34 16
4 C 0.04 2.05 4.65 29.85 0.14 2.19 16
5 C -0.49 -30.10 8.84 25.60 0.23 -29.87 16
6 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16
7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16
8 N -0.94 -60.38 13.29 21.45 0.28 -60.09 16
9 Si 0.96 48.29 29.54 68.60 2.03 50.31 16
10 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16
11 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16
12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16
13 N -0.68 -27.09 5.94 -491.54 -2.92 -30.01 16
14 C 0.06 1.76 5.02 86.30 0.43 2.20 16
15 C 0.08 2.22 3.71 31.06 0.12 2.33 16
16 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
17 C -0.14 -2.63 6.54 31.86 0.21 -2.42 16
18 C -0.14 -2.41 6.57 32.05 0.21 -2.20 16
19 C 0.06 1.43 4.08 31.26 0.13 1.55 16
20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
21 C -0.15 -3.29 9.62 71.98 0.69 -2.60 16
22 O -0.39 -13.61 10.67 -148.98 -1.59 -15.20 16
23 H 0.07 1.84 7.45 -2.39 -0.02 1.82 16
24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16
25 H 0.05 1.76 8.13 -2.38 -0.02 1.74 16
26 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16
27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16
28 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
29 H 0.33 12.41 8.47 -89.70 -0.76 11.65 16
30 H 0.05 1.34 7.44 -2.39 -0.02 1.32 16
31 H 0.05 1.81 8.06 -2.38 -0.02 1.79 16
32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.08 1.44 7.86 -2.38 -0.02 1.42 16
34 H 0.09 1.34 8.06 -2.39 -0.02 1.32 16
35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16
36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16
37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16
38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
Total: -1.00 -72.39 307.66 1.43 -70.96
By element:
Atomic # 1 Polarization: 13.26 SS G_CDS: 0.24 Total: 13.51 kcal
Atomic # 6 Polarization: -32.87 SS G_CDS: 3.39 Total: -29.48 kcal
Atomic # 7 Polarization: -87.47 SS G_CDS: -2.63 Total: -90.10 kcal
Atomic # 8 Polarization: -13.61 SS G_CDS: -1.59 Total: -15.20 kcal
Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.31 kcal
Total: -72.39 1.43 -70.96 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695843202.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.263 kcal
(2) G-P(sol) polarization free energy of solvation -72.390 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds