Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47279 * 2 1 4 4 C 1.53001 * 109.47426 * 240.00326 * 2 1 3 5 5 C 1.50702 * 109.47238 * 175.00034 * 4 2 1 6 6 H 1.07997 * 120.00276 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00036 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99956 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 119.99978 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47296 * 119.99860 * 9 7 5 12 12 H 1.48502 * 109.46867 * 239.99919 * 9 7 5 13 13 N 1.46900 * 109.47255 * 120.00196 * 2 1 3 14 14 C 1.46906 * 110.99705 * 275.00130 * 13 2 1 15 15 C 1.53005 * 109.47037 * 179.97438 * 14 13 2 16 16 H 1.09000 * 109.89329 * 305.51867 * 15 14 13 17 17 C 1.54378 * 109.82837 * 184.59090 * 15 14 13 18 18 C 1.55309 * 102.25014 * 219.13100 * 17 15 14 19 19 C 1.54944 * 100.94264 * 34.13276 * 18 17 15 20 20 H 1.08994 * 110.31231 * 82.47388 * 19 18 17 21 21 C 1.53001 * 110.31101 * 204.64479 * 19 18 17 22 22 O 1.43236 * 109.82846 * 66.45581 * 15 14 13 23 23 H 1.08994 * 109.47245 * 299.99662 * 1 2 3 24 24 H 1.09006 * 109.47144 * 60.00181 * 1 2 3 25 25 H 1.09006 * 109.46808 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47156 * 294.99763 * 4 2 1 27 27 H 1.08997 * 109.47117 * 54.99726 * 4 2 1 28 28 H 0.96996 * 120.00228 * 180.02562 * 8 7 5 29 29 H 1.00897 * 111.00159 * 38.94846 * 13 2 1 30 30 H 1.09000 * 109.47218 * 59.99725 * 14 13 2 31 31 H 1.09005 * 109.47122 * 299.99727 * 14 13 2 32 32 H 1.08997 * 110.85123 * 100.93782 * 17 15 14 33 33 H 1.09005 * 111.02275 * 337.39100 * 17 15 14 34 34 H 1.09000 * 111.12311 * 276.21255 * 18 17 15 35 35 H 1.09000 * 111.12934 * 152.05131 * 18 17 15 36 36 H 1.08993 * 109.47445 * 177.16540 * 21 19 18 37 37 H 1.09007 * 109.46630 * 297.16586 * 21 19 18 38 38 H 1.08999 * 109.47435 * 57.16065 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2305 -1.1934 -2.3578 8 7 3.5766 -1.8385 -3.2990 9 14 6.0922 -1.0621 -2.4360 10 1 6.5838 -0.2917 -1.2655 11 1 6.6856 -2.4233 -2.4178 12 1 6.4872 -0.3666 -3.6872 13 7 2.0196 -0.6925 1.1994 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5332 3.5745 16 1 1.9792 -1.4150 3.7510 17 6 2.5554 0.3894 4.8117 18 6 3.8684 0.0088 5.5488 19 6 4.8005 -0.2979 4.3497 20 1 5.2211 0.6254 3.9516 21 6 5.9185 -1.2514 4.7763 22 8 3.9575 -0.9248 3.3700 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.7517 -1.7715 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0610 -2.2458 -4.0340 29 1 1.4495 -1.4979 1.4100 30 1 1.0870 0.6163 2.5525 31 1 2.7588 1.0462 2.1182 32 1 1.6855 0.1708 5.4310 33 1 2.5661 1.4389 4.5174 34 1 3.7271 -0.8740 6.1723 35 1 4.2462 0.8458 6.1359 36 1 6.5357 -1.4974 3.9124 37 1 6.5338 -0.7720 5.5378 38 1 5.4824 -2.1638 5.1831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843202.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -86.220229 kcal Electronic energy + Delta-G solvation = -16301.948528 eV Core-core repulsion = 13756.640532 eV Total energy + Delta-G solvation = -2545.307996 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54173 -38.11710 -34.93662 -33.45799 -33.08468 -31.22604 -29.14095 -27.58217 -25.13625 -24.03004 -22.43119 -21.58866 -21.14944 -18.39247 -17.82321 -16.89603 -16.57386 -16.29202 -15.61416 -15.08413 -14.87942 -14.53457 -14.09096 -13.83217 -13.62798 -13.45537 -13.23605 -13.21220 -12.82797 -12.63699 -12.59995 -12.46546 -12.37764 -11.97932 -11.74034 -11.67909 -11.62649 -11.11139 -11.07586 -10.49219 -10.31901 -8.90288 -8.10077 -6.13964 1.37756 1.39692 1.53307 2.47165 2.92915 3.22129 3.46425 3.64951 3.89474 3.94964 4.19705 4.26092 4.33590 4.41325 4.51178 4.52978 4.57605 4.65423 4.70555 4.82363 4.91047 4.94164 4.96425 5.08592 5.17891 5.23484 5.27724 5.30923 5.37077 5.50202 5.68626 5.90414 6.31118 6.37812 6.56031 6.79029 6.99824 7.51131 9.02428 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.007961 C = 0.006034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.108829 B = 3516.377980 C = 4639.157936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.098 3.902 3 H 0.054 0.946 4 C 0.037 3.963 5 C -0.495 4.495 6 H 0.050 0.950 7 C -0.008 4.008 8 N -0.941 5.941 9 Si 0.956 3.044 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.680 5.680 14 C 0.056 3.944 15 C 0.081 3.919 16 H 0.077 0.923 17 C -0.143 4.143 18 C -0.139 4.139 19 C 0.056 3.944 20 H 0.056 0.944 21 C -0.146 4.146 22 O -0.392 6.392 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.053 0.947 26 H -0.011 1.011 27 H -0.007 1.007 28 H 0.259 0.741 29 H 0.334 0.666 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.256 5.099 19.773 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 H 0.072 0.928 4 C 0.000 4.000 5 C -0.533 4.533 6 H 0.068 0.932 7 C -0.203 4.203 8 N -0.584 5.584 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.073 4.073 15 C 0.023 3.977 16 H 0.095 0.905 17 C -0.181 4.181 18 C -0.176 4.176 19 C -0.002 4.002 20 H 0.074 0.926 21 C -0.204 4.204 22 O -0.312 6.312 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.011 0.989 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.483 4.966 19.302 19.985 hybrid contribution -0.052 -0.002 -0.479 0.482 sum -1.535 4.964 18.823 19.527 Atomic orbital electron populations 1.22400 0.96448 1.01798 1.02008 1.21459 0.92221 0.96577 0.90886 0.92780 1.19008 0.95016 0.94165 0.91843 1.21490 0.93554 1.32075 1.06183 0.93201 1.25855 1.02931 0.95738 0.95810 1.70096 1.36933 1.38195 1.13168 0.85522 0.80736 0.77716 0.77787 1.19490 1.20812 1.20292 1.60252 1.58292 1.09330 1.03181 1.22368 0.99074 0.95247 0.90625 1.22842 0.83728 0.97229 0.93921 0.90548 1.23137 0.99744 1.00015 0.95185 1.23279 0.94028 1.03354 0.96976 1.23189 0.92630 0.95737 0.88597 0.92583 1.21861 0.97473 0.99665 1.01359 1.88633 1.17694 1.70157 1.54731 0.91421 0.92508 0.92838 0.99231 0.98882 0.93256 0.84777 0.93026 0.92975 0.87885 0.90034 0.89542 0.87993 0.93850 0.88970 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.60 9.16 71.98 0.66 -4.94 16 2 C 0.10 4.19 2.53 44.91 0.11 4.30 16 3 H 0.05 2.36 7.80 -2.38 -0.02 2.34 16 4 C 0.04 2.05 4.65 29.85 0.14 2.19 16 5 C -0.49 -30.10 8.84 25.60 0.23 -29.87 16 6 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 7 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 8 N -0.94 -60.38 13.29 21.45 0.28 -60.09 16 9 Si 0.96 48.29 29.54 68.60 2.03 50.31 16 10 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 N -0.68 -27.09 5.94 -491.54 -2.92 -30.01 16 14 C 0.06 1.76 5.02 86.30 0.43 2.20 16 15 C 0.08 2.22 3.71 31.06 0.12 2.33 16 16 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.14 -2.63 6.54 31.86 0.21 -2.42 16 18 C -0.14 -2.41 6.57 32.05 0.21 -2.20 16 19 C 0.06 1.43 4.08 31.26 0.13 1.55 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.15 -3.29 9.62 71.98 0.69 -2.60 16 22 O -0.39 -13.61 10.67 -148.98 -1.59 -15.20 16 23 H 0.07 1.84 7.45 -2.39 -0.02 1.82 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 1.76 8.13 -2.38 -0.02 1.74 16 26 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.33 12.41 8.47 -89.70 -0.76 11.65 16 30 H 0.05 1.34 7.44 -2.39 -0.02 1.32 16 31 H 0.05 1.81 8.06 -2.38 -0.02 1.79 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.44 7.86 -2.38 -0.02 1.42 16 34 H 0.09 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -72.39 307.66 1.43 -70.96 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.24 Total: 13.51 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.39 Total: -29.48 kcal Atomic # 7 Polarization: -87.47 SS G_CDS: -2.63 Total: -90.10 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.59 Total: -15.20 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.31 kcal Total: -72.39 1.43 -70.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843202.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.263 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds