Wall clock time and date at job start Mon Mar 30 2020 02:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 C 1.53008 * 109.46939 * 180.02562 * 14 13 2 16 16 H 1.08995 * 109.82484 * 59.11422 * 15 14 13 17 17 C 1.54387 * 109.82686 * 180.02562 * 15 14 13 18 18 C 1.55304 * 102.25316 * 140.87116 * 17 15 14 19 19 C 1.54950 * 100.93963 * 325.86048 * 18 17 15 20 20 H 1.08996 * 110.31467 * 277.43334 * 19 18 17 21 21 C 1.53001 * 110.30794 * 155.36024 * 19 18 17 22 22 O 1.43240 * 109.82711 * 298.13050 * 15 14 13 23 23 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 24 24 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 25 25 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 27 27 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 1.00911 * 110.99767 * 38.96092 * 13 2 1 30 30 H 1.08995 * 109.47500 * 299.99460 * 14 13 2 31 31 H 1.08998 * 109.47238 * 60.00420 * 14 13 2 32 32 H 1.09001 * 110.84378 * 259.05373 * 17 15 14 33 33 H 1.08996 * 110.84913 * 22.47133 * 17 15 14 34 34 H 1.08996 * 111.12702 * 83.78063 * 18 17 15 35 35 H 1.08998 * 111.12648 * 207.94788 * 18 17 15 36 36 H 1.09001 * 109.47025 * 60.00200 * 21 19 18 37 37 H 1.08999 * 109.47291 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.47239 * 300.00331 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.5826 -0.2796 -1.2731 11 1 6.6904 -2.4138 -2.4198 12 1 6.4810 -0.3614 -3.6943 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 6 2.5962 -0.5325 3.5742 16 1 3.5854 -0.9419 3.3690 17 6 2.6648 0.4219 4.7858 18 6 2.1815 -0.4866 5.9489 19 6 1.1421 -1.3728 5.2175 20 1 0.1857 -0.8547 5.1473 21 6 0.9708 -2.7051 5.9500 22 8 1.6902 -1.5905 3.9081 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6054 -0.2619 -2.1369 27 1 1.7518 -1.7716 -1.2054 28 1 4.0616 -2.2505 -4.0311 29 1 1.4496 -1.4978 1.4102 30 1 2.7588 1.0464 2.1182 31 1 1.0870 0.6165 2.5525 32 1 3.6872 0.7594 4.9563 33 1 1.9955 1.2712 4.6489 34 1 3.0006 -1.0871 6.3447 35 1 1.7112 0.1012 6.7372 36 1 0.6265 -2.5187 6.9673 37 1 0.2380 -3.3172 5.4244 38 1 1.9264 -3.2286 5.9801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695843206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:06 Heat of formation + Delta-G solvation = -66.855936 kcal Electronic energy + Delta-G solvation = -16195.458846 eV Core-core repulsion = 13650.990548 eV Total energy + Delta-G solvation = -2544.468298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60595 -36.46981 -33.01365 -32.24323 -31.95244 -29.86652 -27.18849 -26.46024 -23.41008 -22.56775 -21.53216 -20.39258 -19.51222 -16.95844 -16.12074 -15.87204 -14.94846 -14.39259 -14.24305 -14.04505 -13.73174 -13.03273 -12.85293 -12.55000 -12.34616 -11.97835 -11.80957 -11.70281 -11.52277 -11.41369 -11.23490 -10.88427 -10.81003 -10.73433 -10.44581 -10.26252 -9.95468 -9.42360 -9.10730 -8.87795 -8.18184 -7.41378 -5.80276 -3.77217 3.43119 3.50027 3.55264 3.81380 4.47359 4.63192 4.67947 4.68190 5.02312 5.15712 5.28276 5.38132 5.50681 5.55709 5.60437 5.61877 5.62501 5.76680 5.81649 5.89324 5.96801 6.03255 6.08288 6.13088 6.19637 6.34567 6.56172 6.73327 7.13160 7.23043 7.67866 7.80385 8.14664 8.17175 8.33488 8.69651 9.28111 9.83416 11.32101 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.006006 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.059220 B = 4660.806559 C = 5051.353359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.088 3.912 3 H 0.061 0.939 4 C 0.032 3.968 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.048 3.952 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.660 5.660 14 C 0.054 3.946 15 C 0.083 3.917 16 H 0.089 0.911 17 C -0.151 4.151 18 C -0.151 4.151 19 C 0.074 3.926 20 H 0.064 0.936 21 C -0.150 4.150 22 O -0.370 6.370 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.256 0.744 29 H 0.339 0.661 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 3.403 18.194 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.021 4.021 3 H 0.079 0.921 4 C -0.005 4.005 5 C -0.523 4.523 6 H 0.076 0.924 7 C -0.151 4.151 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.291 5.291 14 C -0.077 4.077 15 C 0.025 3.975 16 H 0.107 0.893 17 C -0.189 4.189 18 C -0.189 4.189 19 C 0.016 3.984 20 H 0.082 0.918 21 C -0.207 4.207 22 O -0.290 6.290 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.035 0.965 28 H 0.065 0.935 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.394 3.223 17.734 18.552 hybrid contribution 0.101 0.339 0.186 0.399 sum -4.293 3.561 17.919 18.767 Atomic orbital electron populations 1.22543 0.99689 1.01185 1.00337 1.21791 0.89819 0.97989 0.92504 0.92063 1.19119 0.96208 0.95472 0.89720 1.21188 0.91965 1.32404 1.06708 0.92394 1.25016 0.97943 0.96026 0.96107 1.69982 1.35012 1.37045 1.12597 0.86575 0.86588 0.77528 0.77492 1.19916 1.21326 1.21488 1.60501 1.57934 1.08601 1.02051 1.22307 0.98540 0.95771 0.91053 1.22864 0.94085 0.87229 0.93286 0.89276 1.23151 1.02684 0.98686 0.94406 1.23299 0.99339 0.98158 0.98081 1.22897 0.96151 0.95853 0.83497 0.91817 1.21871 1.02828 0.96689 0.99341 1.88476 1.61241 1.46710 1.32531 0.94588 0.92639 0.93029 0.96571 0.96455 0.93476 0.84312 0.90733 0.96319 0.90051 0.90634 0.90375 0.90388 0.91684 0.91922 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 9.16 37.16 0.34 -2.88 16 2 C 0.09 1.88 2.53 -67.71 -0.17 1.71 16 3 H 0.06 1.32 7.80 -51.93 -0.40 0.91 16 4 C 0.03 0.86 4.65 -27.88 -0.13 0.73 16 5 C -0.48 -14.10 8.84 -34.44 -0.30 -14.40 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -28.17 13.29 55.43 0.74 -27.44 16 9 Si 0.89 22.64 29.54 -169.99 -5.02 17.62 16 10 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 N -0.66 -13.29 5.96 -106.73 -0.64 -13.93 16 14 C 0.05 0.87 5.07 -3.82 -0.02 0.85 16 15 C 0.08 1.20 3.80 -26.00 -0.10 1.10 16 16 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 17 C -0.15 -1.63 6.55 -24.78 -0.16 -1.79 16 18 C -0.15 -1.44 6.57 -24.48 -0.16 -1.60 16 19 C 0.07 0.84 4.07 -25.70 -0.10 0.73 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.15 -1.46 9.62 37.16 0.36 -1.10 16 22 O -0.37 -5.61 10.12 -35.23 -0.36 -5.97 16 23 H 0.04 0.58 7.45 -51.93 -0.39 0.19 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.92 8.13 -51.92 -0.42 0.50 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.34 6.78 7.94 -39.29 -0.31 6.47 16 30 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 31 H 0.02 0.29 7.44 -51.93 -0.39 -0.09 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 34 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 306.74 15.07 4.62 4.62 Total: -1.00 -31.59 306.74 -8.13 -39.73 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.93 Total: 0.67 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -0.55 Total: -15.31 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.10 Total: -41.36 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.36 Total: -5.97 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.59 -8.13 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.130 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds