Wall clock time and date at job start Mon Mar 30 2020 02:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.53001 * 109.47477 * 239.99733 * 2 1 3 5 5 C 1.50697 * 109.46995 * 174.99956 * 4 2 1 6 6 H 1.07991 * 120.00449 * 359.72153 * 5 4 2 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 N 1.46900 * 109.47233 * 119.99061 * 2 1 3 14 14 C 1.46893 * 111.00307 * 275.00478 * 13 2 1 15 15 C 1.53008 * 109.46939 * 180.02562 * 14 13 2 16 16 H 1.08995 * 109.82484 * 59.11422 * 15 14 13 17 17 C 1.54387 * 109.82686 * 180.02562 * 15 14 13 18 18 C 1.55304 * 102.25316 * 140.87116 * 17 15 14 19 19 C 1.54950 * 100.93963 * 325.86048 * 18 17 15 20 20 H 1.08996 * 110.31467 * 277.43334 * 19 18 17 21 21 C 1.53001 * 110.30794 * 155.36024 * 19 18 17 22 22 O 1.43240 * 109.82711 * 298.13050 * 15 14 13 23 23 H 1.08996 * 109.47358 * 300.00203 * 1 2 3 24 24 H 1.08995 * 109.47224 * 60.00941 * 1 2 3 25 25 H 1.09009 * 109.46668 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47065 * 54.99382 * 4 2 1 27 27 H 1.09001 * 109.46892 * 294.99646 * 4 2 1 28 28 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 29 29 H 1.00911 * 110.99767 * 38.96092 * 13 2 1 30 30 H 1.08995 * 109.47500 * 299.99460 * 14 13 2 31 31 H 1.08998 * 109.47238 * 60.00420 * 14 13 2 32 32 H 1.09001 * 110.84378 * 259.05373 * 17 15 14 33 33 H 1.08996 * 110.84913 * 22.47133 * 17 15 14 34 34 H 1.08996 * 111.12702 * 83.78063 * 18 17 15 35 35 H 1.08998 * 111.12648 * 207.94788 * 18 17 15 36 36 H 1.09001 * 109.47025 * 60.00200 * 21 19 18 37 37 H 1.08999 * 109.47291 * 180.02562 * 21 19 18 38 38 H 1.09000 * 109.47239 * 300.00331 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0786 -0.0819 -0.5417 7 6 4.2305 -1.1936 -2.3576 8 7 3.5771 -1.8431 -3.2961 9 14 6.0916 -1.0551 -2.4403 10 1 6.5826 -0.2796 -1.2731 11 1 6.6904 -2.4138 -2.4198 12 1 6.4810 -0.3614 -3.6943 13 7 2.0197 -0.6923 1.1995 14 6 2.0824 0.2229 2.3469 15 6 2.5962 -0.5325 3.5742 16 1 3.5854 -0.9419 3.3690 17 6 2.6648 0.4219 4.7858 18 6 2.1815 -0.4866 5.9489 19 6 1.1421 -1.3728 5.2175 20 1 0.1857 -0.8547 5.1473 21 6 0.9708 -2.7051 5.9500 22 8 1.6902 -1.5905 3.9081 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6054 -0.2619 -2.1369 27 1 1.7518 -1.7716 -1.2054 28 1 4.0616 -2.2505 -4.0311 29 1 1.4496 -1.4978 1.4102 30 1 2.7588 1.0464 2.1182 31 1 1.0870 0.6165 2.5525 32 1 3.6872 0.7594 4.9563 33 1 1.9955 1.2712 4.6489 34 1 3.0006 -1.0871 6.3447 35 1 1.7112 0.1012 6.7372 36 1 0.6265 -2.5187 6.9673 37 1 0.2380 -3.3172 5.4244 38 1 1.9264 -3.2286 5.9801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695843206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:05 Heat of formation + Delta-G solvation = -87.899732 kcal Electronic energy + Delta-G solvation = -16196.371373 eV Core-core repulsion = 13650.990548 eV Total energy + Delta-G solvation = -2545.380825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61770 -38.08635 -34.91955 -33.46959 -33.14382 -31.22310 -29.15605 -27.59974 -25.14893 -24.00716 -22.47452 -21.46748 -21.20993 -18.40543 -17.91874 -16.90170 -16.62039 -16.21290 -15.70870 -15.18179 -14.78297 -14.53279 -14.10190 -13.74592 -13.60454 -13.56275 -13.22763 -13.13992 -12.84072 -12.76602 -12.60789 -12.50225 -12.34762 -11.95363 -11.75114 -11.71281 -11.60476 -11.12133 -11.07087 -10.48826 -10.39550 -8.97371 -8.08868 -6.13928 1.41171 1.42471 1.55532 2.48280 2.85849 3.23317 3.43939 3.64388 3.88258 4.00456 4.20561 4.21829 4.29586 4.41874 4.44651 4.50932 4.61105 4.69096 4.71950 4.84831 4.86810 4.91172 4.98278 5.09938 5.15622 5.20740 5.26490 5.32141 5.37169 5.50562 5.67872 5.90611 6.23532 6.35865 6.53161 6.74089 6.99967 7.51457 9.03803 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030066 B = 0.006006 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.059220 B = 4660.806559 C = 5051.353359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.060 0.940 4 C 0.037 3.963 5 C -0.497 4.497 6 H 0.056 0.944 7 C -0.010 4.010 8 N -0.942 5.942 9 Si 0.961 3.039 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.280 1.280 13 N -0.680 5.680 14 C 0.057 3.943 15 C 0.082 3.918 16 H 0.067 0.933 17 C -0.144 4.144 18 C -0.141 4.141 19 C 0.061 3.939 20 H 0.069 0.931 21 C -0.147 4.147 22 O -0.398 6.398 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.048 0.952 26 H -0.007 1.007 27 H -0.013 1.013 28 H 0.258 0.742 29 H 0.336 0.664 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 4.489 20.308 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 H 0.078 0.922 4 C -0.001 4.001 5 C -0.536 4.536 6 H 0.074 0.926 7 C -0.205 4.205 8 N -0.585 5.585 9 Si 0.786 3.214 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.206 1.206 13 N -0.311 5.311 14 C -0.072 4.072 15 C 0.025 3.975 16 H 0.085 0.915 17 C -0.182 4.182 18 C -0.179 4.179 19 C 0.004 3.996 20 H 0.087 0.913 21 C -0.204 4.204 22 O -0.319 6.319 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.005 0.995 28 H 0.067 0.933 29 H 0.154 0.846 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.046 4.321 19.870 20.733 hybrid contribution -0.052 -0.029 -0.464 0.468 sum -4.098 4.291 19.406 20.293 Atomic orbital electron populations 1.22389 0.96986 1.01481 1.01774 1.21483 0.91962 0.96860 0.90914 0.92156 1.19009 0.95340 0.94024 0.91714 1.21506 0.93312 1.32168 1.06599 0.92564 1.25922 1.03218 0.95644 0.95737 1.70115 1.37114 1.37964 1.13297 0.85457 0.80260 0.77674 0.77963 1.18883 1.20946 1.20574 1.60363 1.58196 1.09474 1.03060 1.22351 0.99274 0.95240 0.90366 1.22780 0.92812 0.87833 0.94120 0.91470 1.23132 1.03872 0.98280 0.92955 1.23290 0.98903 0.97703 0.97994 1.23188 0.96793 0.97178 0.82400 0.91297 1.21877 1.02286 0.95759 1.00520 1.88455 1.61447 1.47206 1.34749 0.91943 0.92313 0.93330 0.98901 0.99500 0.93281 0.84568 0.90870 0.95017 0.88848 0.89576 0.90073 0.87717 0.89011 0.92826 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.90 9.16 71.98 0.66 -5.24 16 2 C 0.10 4.18 2.53 44.92 0.11 4.29 16 3 H 0.06 2.58 7.80 -2.39 -0.02 2.56 16 4 C 0.04 2.01 4.65 29.85 0.14 2.15 16 5 C -0.50 -29.48 8.84 25.60 0.23 -29.25 16 6 H 0.06 3.28 7.74 -2.92 -0.02 3.26 16 7 C -0.01 -0.58 5.46 84.66 0.46 -0.12 16 8 N -0.94 -59.85 13.29 21.45 0.28 -59.56 16 9 Si 0.96 46.79 29.54 68.60 2.03 48.81 16 10 H -0.26 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 N -0.68 -27.48 5.96 -491.58 -2.93 -30.41 16 14 C 0.06 1.81 5.07 86.31 0.44 2.25 16 15 C 0.08 2.31 3.80 31.07 0.12 2.42 16 16 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 17 C -0.14 -2.74 6.55 31.86 0.21 -2.53 16 18 C -0.14 -2.26 6.57 32.05 0.21 -2.05 16 19 C 0.06 1.27 4.07 31.26 0.13 1.40 16 20 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 21 C -0.15 -2.60 9.62 71.98 0.69 -1.91 16 22 O -0.40 -11.79 10.12 -148.98 -1.51 -13.30 16 23 H 0.06 1.87 7.45 -2.39 -0.02 1.85 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 27 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 29 H 0.34 13.66 7.94 -89.69 -0.71 12.95 16 30 H 0.07 2.31 8.05 -2.39 -0.02 2.29 16 31 H 0.03 0.93 7.44 -2.39 -0.02 0.91 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 1.47 7.85 -2.39 -0.02 1.45 16 34 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.74 306.74 1.56 -67.18 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.29 Total: 15.87 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 3.40 Total: -28.59 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -2.65 Total: -89.97 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -1.51 Total: -13.30 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.81 kcal Total: -68.74 1.56 -67.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695843206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.715 kcal (2) G-P(sol) polarization free energy of solvation -68.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds