Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.53005 * 109.47000 * 240.00513 * 2 1 3 5 5 C 1.50696 * 109.47232 * 170.44264 * 4 2 1 6 6 H 1.08000 * 119.99893 * 353.85751 * 5 4 2 7 7 C 1.37877 * 120.00091 * 173.57762 * 5 4 2 8 8 N 1.31519 * 119.99917 * 0.27959 * 7 5 4 9 9 Si 1.86791 * 120.00138 * 180.27698 * 7 5 4 10 10 H 1.48505 * 109.47415 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47258 * 120.00086 * 9 7 5 12 12 H 1.48502 * 109.47241 * 239.99953 * 9 7 5 13 13 N 1.46900 * 109.47485 * 120.00507 * 2 1 3 14 14 C 1.46896 * 110.99979 * 202.91959 * 13 2 1 15 15 C 1.53001 * 109.47179 * 62.47403 * 14 13 2 16 16 O 1.42898 * 109.47416 * 66.75372 * 15 14 13 17 17 C 1.46895 * 110.99969 * 78.96416 * 13 2 1 18 18 C 1.53786 * 113.61587 * 277.49969 * 17 13 2 19 19 C 1.53781 * 87.07795 * 220.01965 * 18 17 13 20 20 C 1.53776 * 87.08585 * 25.43067 * 19 18 17 21 21 H 1.09004 * 109.47008 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46944 * 299.99522 * 1 2 3 23 23 H 1.08998 * 109.47572 * 59.99438 * 1 2 3 24 24 H 1.09000 * 109.46955 * 50.44145 * 4 2 1 25 25 H 1.08998 * 109.46872 * 290.44454 * 4 2 1 26 26 H 0.96995 * 119.99911 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47208 * 182.47099 * 14 13 2 28 28 H 1.08996 * 109.47484 * 302.47160 * 14 13 2 29 29 H 1.09006 * 109.47070 * 186.76231 * 15 14 13 30 30 H 1.09012 * 109.47027 * 306.75575 * 15 14 13 31 31 H 0.96697 * 113.99854 * 179.97438 * 16 15 14 32 32 H 1.09003 * 112.84874 * 48.80417 * 17 13 2 33 33 H 1.08996 * 113.61202 * 334.56319 * 18 17 13 34 34 H 1.08998 * 113.61014 * 105.47439 * 18 17 13 35 35 H 1.09004 * 113.61650 * 270.87907 * 19 18 17 36 36 H 1.09001 * 113.61317 * 139.98091 * 19 18 17 37 37 H 1.08996 * 113.61833 * 220.01952 * 20 19 18 38 38 H 1.08999 * 113.69069 * 89.12316 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5283 -0.5202 -1.3730 6 1 4.0420 0.1433 -0.6931 7 6 4.2353 -1.1878 -2.3506 8 7 3.6098 -1.9957 -3.1786 9 14 6.0813 -0.9446 -2.4990 10 1 6.5407 0.0074 -1.4559 11 1 6.7687 -2.2482 -2.3159 12 1 6.4025 -0.4001 -3.8427 13 7 2.0197 -0.6926 1.1993 14 6 3.3861 -0.2677 1.5315 15 6 3.3908 1.2278 1.8548 16 8 2.6582 1.4570 3.0601 17 6 1.9477 -2.1502 1.0318 18 6 0.5557 -2.7357 1.3223 19 6 1.2780 -3.9050 2.0119 20 6 2.4472 -2.9363 2.2555 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.5440 -0.3153 -2.1310 25 1 1.8226 -1.7862 -1.1682 26 1 4.1072 -2.4656 -3.8661 27 1 3.7404 -0.8276 2.3971 28 1 4.0424 -0.4579 0.6823 29 1 4.4182 1.5685 1.9835 30 1 2.9255 1.7778 1.0367 31 1 2.6200 2.3857 3.3265 32 1 2.3777 -2.4896 0.0894 33 1 -0.0401 -2.1280 2.0032 34 1 0.0092 -3.0279 0.4256 35 1 1.5238 -4.7253 1.3375 36 1 0.7907 -4.2402 2.9276 37 1 3.4277 -3.3905 2.1122 38 1 2.3698 -2.3829 3.1913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -20.445607 kcal Electronic energy + Delta-G solvation = -17279.999233 eV Core-core repulsion = 14737.543439 eV Total energy + Delta-G solvation = -2542.455795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.19253 -36.57448 -35.22854 -32.57834 -30.92946 -27.72875 -27.35020 -24.97811 -23.64871 -23.09888 -21.33149 -19.32563 -18.11667 -16.99569 -16.34548 -15.55730 -15.45532 -14.62994 -14.12717 -13.80417 -13.02220 -12.81104 -12.69961 -12.33960 -11.86086 -11.65462 -11.46225 -11.36941 -11.14196 -10.95785 -10.63731 -10.60109 -10.48202 -10.32147 -9.87418 -9.67290 -9.55694 -9.43508 -9.11445 -8.93951 -8.39950 -7.03931 -6.07485 -4.08974 3.23742 3.32645 3.33878 4.37828 4.78161 4.86653 5.23029 5.28530 5.32745 5.48701 5.55262 5.68588 5.83697 6.02998 6.10244 6.15897 6.30675 6.36664 6.38084 6.41282 6.47769 6.49245 6.53248 6.78569 6.82878 6.87427 6.94142 6.99862 7.24596 7.57174 7.66138 7.91728 8.04729 8.16389 8.23951 8.35248 8.96435 9.53530 11.03117 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.010994 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.607900 B = 2546.177978 C = 2961.414914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.073 3.927 3 H 0.064 0.936 4 C -0.011 4.011 5 C -0.523 4.523 6 H 0.064 0.936 7 C 0.060 3.940 8 N -0.889 5.889 9 Si 0.883 3.117 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.504 5.504 14 C 0.032 3.968 15 C 0.079 3.921 16 O -0.563 6.563 17 C 0.054 3.946 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.134 4.134 21 H 0.052 0.948 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.011 0.989 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.050 0.950 31 H 0.362 0.638 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.476 1.957 8.992 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 H 0.082 0.918 4 C -0.048 4.048 5 C -0.561 4.561 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.528 5.528 9 Si 0.711 3.289 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.228 5.228 14 C -0.095 4.095 15 C 0.001 3.999 16 O -0.366 6.366 17 C -0.054 4.054 18 C -0.162 4.162 19 C -0.181 4.181 20 C -0.172 4.172 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.030 0.970 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.206 0.794 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.818 1.316 9.197 9.709 hybrid contribution 1.725 0.507 -0.974 2.045 sum -1.092 1.823 8.223 8.493 Atomic orbital electron populations 1.21833 0.96663 1.01289 0.99689 1.21802 0.93408 0.97852 0.90408 0.91771 1.19837 0.95693 0.97025 0.92272 1.21412 0.93225 1.26377 1.15039 0.91795 1.25009 0.98050 0.95297 0.95779 1.69971 1.35559 1.28659 1.18627 0.86678 0.86140 0.78014 0.78071 1.19700 1.21011 1.21005 1.62596 1.20894 1.04348 1.34955 1.22556 0.92606 0.92858 1.01527 1.22383 0.93424 0.97851 0.86224 1.86625 1.77128 1.29662 1.43188 1.23278 0.96091 0.88022 0.98026 1.22949 0.96963 0.96422 0.99822 1.22715 0.98334 0.96894 1.00187 1.22980 0.97402 0.97522 0.99323 0.92868 0.93687 0.93701 0.97036 0.94706 0.93053 0.91957 0.88674 0.94608 0.93223 0.79362 0.88491 0.90090 0.92316 0.90735 0.92173 0.92457 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.09 37.16 0.34 -2.20 16 2 C 0.07 1.53 2.34 -67.71 -0.16 1.37 16 3 H 0.06 1.36 5.52 -51.93 -0.29 1.07 16 4 C -0.01 -0.26 3.95 -27.88 -0.11 -0.37 16 5 C -0.52 -13.75 7.31 -34.44 -0.25 -14.00 16 6 H 0.06 1.63 5.36 -52.49 -0.28 1.35 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 9 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.50 -9.96 4.36 -217.75 -0.95 -10.91 16 14 C 0.03 0.62 4.69 -3.83 -0.02 0.60 16 15 C 0.08 1.34 7.09 37.16 0.26 1.61 16 16 O -0.56 -9.10 13.63 -35.23 -0.48 -9.59 16 17 C 0.05 1.05 2.48 -66.90 -0.17 0.89 16 18 C -0.12 -2.10 5.73 -25.92 -0.15 -2.25 16 19 C -0.14 -2.19 8.08 -25.92 -0.21 -2.40 16 20 C -0.13 -2.28 6.49 -25.92 -0.17 -2.44 16 21 H 0.05 0.97 5.69 -51.93 -0.30 0.67 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.01 0.31 8.12 -51.93 -0.42 -0.11 16 25 H 0.03 0.92 5.50 -51.93 -0.29 0.64 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.06 1.17 6.83 -51.93 -0.35 0.82 16 28 H 0.10 2.08 4.30 -51.93 -0.22 1.86 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.87 5.85 -51.92 -0.30 0.57 16 31 H 0.36 4.02 9.12 45.56 0.42 4.44 16 32 H 0.10 2.26 5.39 -51.93 -0.28 1.98 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.36 7.91 -51.93 -0.41 0.94 16 LS Contribution 287.42 15.07 4.33 4.33 Total: -1.00 -29.10 287.42 -7.33 -36.43 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.22 Total: 6.54 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -0.73 Total: -17.64 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.21 Total: -35.97 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.48 Total: -9.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.10 -7.33 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.987 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds