Wall clock time and date at job start Mon Mar 30 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 C 1.53005 * 109.47000 * 240.00513 * 2 1 3 5 5 C 1.50696 * 109.47232 * 170.44264 * 4 2 1 6 6 H 1.08000 * 119.99893 * 353.85751 * 5 4 2 7 7 C 1.37877 * 120.00091 * 173.57762 * 5 4 2 8 8 N 1.31519 * 119.99917 * 0.27959 * 7 5 4 9 9 Si 1.86791 * 120.00138 * 180.27698 * 7 5 4 10 10 H 1.48505 * 109.47415 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47258 * 120.00086 * 9 7 5 12 12 H 1.48502 * 109.47241 * 239.99953 * 9 7 5 13 13 N 1.46900 * 109.47485 * 120.00507 * 2 1 3 14 14 C 1.46896 * 110.99979 * 202.91959 * 13 2 1 15 15 C 1.53001 * 109.47179 * 62.47403 * 14 13 2 16 16 O 1.42898 * 109.47416 * 66.75372 * 15 14 13 17 17 C 1.46895 * 110.99969 * 78.96416 * 13 2 1 18 18 C 1.53786 * 113.61587 * 277.49969 * 17 13 2 19 19 C 1.53781 * 87.07795 * 220.01965 * 18 17 13 20 20 C 1.53776 * 87.08585 * 25.43067 * 19 18 17 21 21 H 1.09004 * 109.47008 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46944 * 299.99522 * 1 2 3 23 23 H 1.08998 * 109.47572 * 59.99438 * 1 2 3 24 24 H 1.09000 * 109.46955 * 50.44145 * 4 2 1 25 25 H 1.08998 * 109.46872 * 290.44454 * 4 2 1 26 26 H 0.96995 * 119.99911 * 180.02562 * 8 7 5 27 27 H 1.09003 * 109.47208 * 182.47099 * 14 13 2 28 28 H 1.08996 * 109.47484 * 302.47160 * 14 13 2 29 29 H 1.09006 * 109.47070 * 186.76231 * 15 14 13 30 30 H 1.09012 * 109.47027 * 306.75575 * 15 14 13 31 31 H 0.96697 * 113.99854 * 179.97438 * 16 15 14 32 32 H 1.09003 * 112.84874 * 48.80417 * 17 13 2 33 33 H 1.08996 * 113.61202 * 334.56319 * 18 17 13 34 34 H 1.08998 * 113.61014 * 105.47439 * 18 17 13 35 35 H 1.09004 * 113.61650 * 270.87907 * 19 18 17 36 36 H 1.09001 * 113.61317 * 139.98091 * 19 18 17 37 37 H 1.08996 * 113.61833 * 220.01952 * 20 19 18 38 38 H 1.08999 * 113.69069 * 89.12316 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5283 -0.5202 -1.3730 6 1 4.0420 0.1433 -0.6931 7 6 4.2353 -1.1878 -2.3506 8 7 3.6098 -1.9957 -3.1786 9 14 6.0813 -0.9446 -2.4990 10 1 6.5407 0.0074 -1.4559 11 1 6.7687 -2.2482 -2.3159 12 1 6.4025 -0.4001 -3.8427 13 7 2.0197 -0.6926 1.1993 14 6 3.3861 -0.2677 1.5315 15 6 3.3908 1.2278 1.8548 16 8 2.6582 1.4570 3.0601 17 6 1.9477 -2.1502 1.0318 18 6 0.5557 -2.7357 1.3223 19 6 1.2780 -3.9050 2.0119 20 6 2.4472 -2.9363 2.2555 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.5440 -0.3153 -2.1310 25 1 1.8226 -1.7862 -1.1682 26 1 4.1072 -2.4656 -3.8661 27 1 3.7404 -0.8276 2.3971 28 1 4.0424 -0.4579 0.6823 29 1 4.4182 1.5685 1.9835 30 1 2.9255 1.7778 1.0367 31 1 2.6200 2.3857 3.3265 32 1 2.3777 -2.4896 0.0894 33 1 -0.0401 -2.1280 2.0032 34 1 0.0092 -3.0279 0.4256 35 1 1.5238 -4.7253 1.3375 36 1 0.7907 -4.2402 2.9276 37 1 3.4277 -3.3905 2.1122 38 1 2.3698 -2.3829 3.1913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:35 Heat of formation + Delta-G solvation = -41.152580 kcal Electronic energy + Delta-G solvation = -17280.897155 eV Core-core repulsion = 14737.543439 eV Total energy + Delta-G solvation = -2543.353716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72378 -37.92198 -36.74310 -34.58389 -32.52551 -29.54667 -28.93765 -26.36169 -25.25251 -24.84455 -22.92836 -20.81569 -19.67639 -18.67880 -17.99987 -17.12391 -17.00299 -16.47969 -15.66705 -15.22825 -14.60878 -14.47812 -14.22593 -13.98700 -13.40482 -13.21024 -13.12146 -13.02703 -12.78572 -12.61409 -12.34094 -12.17246 -12.09314 -11.92516 -11.58415 -11.21933 -11.03465 -10.89389 -10.84312 -10.61813 -10.45787 -8.73577 -8.18142 -6.25167 1.35037 1.37354 1.47408 2.38303 3.12346 3.30608 3.63332 3.86336 3.94979 4.07621 4.15780 4.25454 4.47077 4.54192 4.64283 4.71897 4.82172 4.83872 4.99366 5.01313 5.03953 5.10652 5.11781 5.15772 5.19289 5.30878 5.40029 5.49523 5.61192 5.64028 5.70184 5.88222 6.24791 6.53020 6.56691 6.89081 7.07498 7.40952 8.93275 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020276 B = 0.010994 C = 0.009453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.607900 B = 2546.177978 C = 2961.414914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.080 3.920 3 H 0.063 0.937 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.947 3.053 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.494 5.494 14 C 0.029 3.971 15 C 0.087 3.913 16 O -0.575 6.575 17 C 0.041 3.959 18 C -0.117 4.117 19 C -0.130 4.130 20 C -0.126 4.126 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.047 0.953 24 H -0.020 1.020 25 H 0.013 0.987 26 H 0.259 0.741 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.386 0.614 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 2.615 10.973 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.028 4.028 3 H 0.081 0.919 4 C -0.040 4.040 5 C -0.561 4.561 6 H 0.091 0.909 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.773 3.227 10 H -0.181 1.181 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.218 5.218 14 C -0.099 4.099 15 C 0.009 3.991 16 O -0.381 6.381 17 C -0.067 4.067 18 C -0.155 4.155 19 C -0.167 4.167 20 C -0.164 4.164 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.066 0.934 24 H -0.002 1.002 25 H 0.031 0.969 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.234 0.766 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.571 2.004 11.203 11.667 hybrid contribution 1.622 0.320 -1.565 2.277 sum -0.949 2.324 9.637 9.959 Atomic orbital electron populations 1.21759 0.94720 1.01598 1.00693 1.21692 0.95001 0.97192 0.88951 0.91854 1.19742 0.95172 0.96031 0.93059 1.21783 0.94060 1.25663 1.14580 0.90852 1.25832 1.02588 0.95218 0.95663 1.70109 1.37329 1.30088 1.19588 0.85659 0.80755 0.78071 0.78234 1.18097 1.20995 1.20942 1.62738 1.21062 1.04434 1.33517 1.22525 0.91797 0.95018 1.00575 1.22184 0.94648 0.95779 0.86496 1.86545 1.76981 1.32151 1.42434 1.23248 0.98178 0.88045 0.97262 1.22907 0.95662 0.97068 0.99868 1.22667 0.96985 0.96019 1.01075 1.22934 0.97973 0.97401 0.98100 0.92944 0.91950 0.93356 1.00200 0.96877 0.93190 0.91343 0.91517 0.92631 0.93987 0.76580 0.93047 0.89209 0.93090 0.90762 0.89369 0.92704 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.09 71.98 0.65 -4.04 16 2 C 0.08 3.33 2.34 44.92 0.11 3.44 16 3 H 0.06 2.65 5.52 -2.39 -0.01 2.64 16 4 C 0.00 -0.11 3.95 29.85 0.12 0.01 16 5 C -0.52 -28.05 7.31 25.60 0.19 -27.86 16 6 H 0.07 3.74 5.36 -2.91 -0.02 3.73 16 7 C 0.00 0.26 5.46 84.65 0.46 0.73 16 8 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 9 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.49 -19.16 4.36 -842.84 -3.67 -22.84 16 14 C 0.03 1.08 4.69 86.30 0.41 1.48 16 15 C 0.09 2.76 7.09 71.98 0.51 3.28 16 16 O -0.57 -16.85 13.63 -148.98 -2.03 -18.88 16 17 C 0.04 1.60 2.48 45.44 0.11 1.72 16 18 C -0.12 -3.85 5.73 31.12 0.18 -3.67 16 19 C -0.13 -3.70 8.08 31.12 0.25 -3.45 16 20 C -0.13 -4.09 6.49 31.12 0.20 -3.89 16 21 H 0.05 1.88 5.69 -2.38 -0.01 1.87 16 22 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H -0.02 -1.15 8.12 -2.39 -0.02 -1.17 16 25 H 0.01 0.73 5.50 -2.39 -0.01 0.72 16 26 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.07 2.48 6.83 -2.39 -0.02 2.46 16 28 H 0.07 2.91 4.30 -2.39 -0.01 2.90 16 29 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.04 1.40 5.85 -2.38 -0.01 1.39 16 31 H 0.39 7.27 9.12 -74.06 -0.68 6.60 16 32 H 0.05 2.50 5.39 -2.39 -0.01 2.49 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.05 1.73 7.69 -2.39 -0.02 1.72 16 35 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 2.74 7.91 -2.39 -0.02 2.72 16 Total: -1.00 -62.95 287.42 0.17 -62.79 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.37 Total: 21.26 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 3.19 Total: -32.27 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -3.39 Total: -78.28 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -2.03 Total: -18.88 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -62.95 0.17 -62.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.635 kcal (2) G-P(sol) polarization free energy of solvation -62.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds