Wall clock time and date at job start Mon Mar 30 2020 04:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47435 * 2 1 4 4 C 1.53002 * 109.46621 * 240.00421 * 2 1 3 5 5 C 1.50702 * 109.46933 * 171.44996 * 4 2 1 6 6 H 1.07999 * 120.00242 * 354.31822 * 5 4 2 7 7 C 1.37885 * 120.00146 * 174.31483 * 5 4 2 8 8 N 1.31511 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99740 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46815 * 269.99607 * 9 7 5 11 11 H 1.48499 * 109.47252 * 29.99888 * 9 7 5 12 12 H 1.48500 * 109.46671 * 150.00004 * 9 7 5 13 13 N 1.46903 * 109.47120 * 120.00966 * 2 1 3 14 14 C 1.46845 * 111.00130 * 72.09594 * 13 2 1 15 15 C 1.53039 * 109.52343 * 185.83900 * 14 13 2 16 16 C 1.53120 * 109.27795 * 300.82284 * 15 14 13 17 17 C 1.53118 * 109.16135 * 57.65069 * 16 15 14 18 18 C 1.46850 * 110.99749 * 196.30694 * 13 2 1 19 19 H 1.08992 * 109.46052 * 294.17403 * 18 13 2 20 20 C 1.53004 * 109.46276 * 54.14240 * 18 13 2 21 21 O 1.42900 * 109.46725 * 63.11586 * 20 18 13 22 22 H 1.08996 * 109.47451 * 174.83802 * 1 2 3 23 23 H 1.09004 * 109.46688 * 294.84184 * 1 2 3 24 24 H 1.09000 * 109.47051 * 54.83737 * 1 2 3 25 25 H 1.08994 * 109.47307 * 51.45623 * 4 2 1 26 26 H 1.08995 * 109.47642 * 291.44987 * 4 2 1 27 27 H 0.96993 * 120.00167 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46633 * 305.85899 * 14 13 2 29 29 H 1.09008 * 109.46137 * 65.83746 * 14 13 2 30 30 H 1.09000 * 109.50361 * 60.75884 * 15 14 13 31 31 H 1.08995 * 109.50350 * 180.84332 * 15 14 13 32 32 H 1.08997 * 109.52329 * 177.55790 * 16 15 14 33 33 H 1.08997 * 109.52471 * 297.74755 * 16 15 14 34 34 H 1.09009 * 109.50121 * 62.28926 * 17 16 15 35 35 H 1.09005 * 109.50393 * 182.36481 * 17 16 15 36 36 H 1.09001 * 109.46890 * 183.11307 * 20 18 13 37 37 H 1.08994 * 109.47132 * 303.11874 * 20 18 13 38 38 H 0.96703 * 113.99624 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5320 -0.5409 -1.3596 6 1 4.0505 0.1053 -0.6669 7 6 4.2353 -1.2011 -2.3448 8 7 5.5374 -1.0434 -2.4413 9 14 3.3384 -2.3184 -3.5434 10 1 3.2951 -3.6983 -2.9961 11 1 1.9534 -1.8210 -3.7422 12 1 4.0539 -2.3243 -4.8447 13 7 2.0197 -0.6927 1.1993 14 6 1.7978 -2.1408 1.0982 15 6 2.1844 -2.8109 2.4186 16 6 3.6574 -2.5212 2.7202 17 6 3.8712 -1.0059 2.7723 18 6 3.4357 -0.3881 1.4417 19 1 4.0395 -0.8021 0.6342 20 6 3.6287 1.1287 1.4963 21 8 2.8939 1.6629 2.5994 22 1 -0.3634 -1.0234 -0.0925 23 1 -0.3633 0.4318 0.9326 24 1 -0.3633 0.5918 -0.8401 25 1 1.5573 -0.3031 -2.1326 26 1 1.8067 -1.7834 -1.1764 27 1 6.0322 -1.5081 -3.1341 28 1 0.7458 -2.3332 0.8876 29 1 2.4096 -2.5465 0.2924 30 1 1.5638 -2.4156 3.2228 31 1 2.0337 -3.8874 2.3382 32 1 3.9256 -2.9601 3.6812 33 1 4.2810 -2.9502 1.9360 34 1 3.2770 -0.5822 3.5821 35 1 4.9261 -0.7929 2.9451 36 1 4.6875 1.3559 1.6209 37 1 3.2680 1.5745 0.5695 38 1 2.9702 2.6221 2.6952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:33 Heat of formation + Delta-G solvation = -48.957208 kcal Electronic energy + Delta-G solvation = -17571.024605 eV Core-core repulsion = 15027.332454 eV Total energy + Delta-G solvation = -2543.692151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.22792 -35.82332 -34.63560 -32.43434 -30.93130 -29.50790 -27.98380 -25.62045 -23.70871 -22.50412 -20.81947 -19.58741 -18.50503 -16.84726 -16.43902 -15.65800 -14.83910 -14.20424 -13.95588 -13.64569 -13.32567 -13.09156 -12.56642 -12.47060 -12.30356 -12.14504 -11.70485 -11.37143 -11.14540 -10.96503 -10.71563 -10.58873 -10.27108 -10.08022 -10.02490 -9.69525 -9.60746 -9.52036 -9.11972 -8.94449 -8.57585 -7.11479 -6.11072 -4.07952 3.24961 3.33812 3.38268 4.39587 4.71109 4.97367 5.23263 5.40325 5.45512 5.51212 5.72806 5.92985 5.94077 6.04975 6.10256 6.18845 6.22411 6.25007 6.36924 6.47636 6.53866 6.54680 6.66058 6.67077 6.68324 6.78702 6.85429 6.90058 7.18938 7.29533 7.30450 7.72203 8.05931 8.11199 8.22884 8.44348 8.89937 9.51308 10.99642 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.010943 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.033282 B = 2558.180547 C = 2585.032564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.077 0.923 4 C -0.047 4.047 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.289 1.289 13 N -0.509 5.509 14 C 0.050 3.950 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.104 4.104 18 C 0.067 3.933 19 H 0.113 0.887 20 C 0.081 3.919 21 O -0.562 6.562 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.014 0.986 26 H 0.019 0.981 27 H 0.263 0.737 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 0.628 7.747 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.095 0.905 4 C -0.085 4.085 5 C -0.564 4.564 6 H 0.105 0.895 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 N -0.233 5.233 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.157 4.157 17 C -0.142 4.142 18 C -0.041 4.041 19 H 0.130 0.870 20 C 0.004 3.996 21 O -0.365 6.365 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.612 0.104 8.119 9.871 hybrid contribution 0.330 -0.377 -1.647 1.721 sum -5.282 -0.273 6.473 8.359 Atomic orbital electron populations 1.21805 0.96550 1.00672 1.00502 1.21681 0.93167 0.98582 0.89191 0.90527 1.20311 0.97577 0.96197 0.94433 1.21378 0.90681 1.28730 1.15659 0.89459 1.25013 0.94644 0.96399 0.97062 1.69893 1.06505 1.43293 1.34108 0.86850 0.80529 0.81459 0.80953 1.20405 1.19124 1.21504 1.62255 1.17391 1.07275 1.36423 1.22061 1.00111 0.89254 0.96368 1.21546 0.96472 0.98733 0.98256 1.21551 0.96740 0.96885 1.00525 1.21494 0.99731 0.94551 0.98464 1.22254 0.91019 0.92596 0.98252 0.87009 1.22405 0.93586 0.94939 0.88687 1.86603 1.73941 1.24775 1.51163 0.93681 0.92909 0.93364 0.96761 0.96287 0.92718 0.92023 0.93306 0.92027 0.92748 0.93008 0.92165 0.91488 0.92880 0.94405 0.92586 0.79488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.14 37.16 0.34 -2.05 16 2 C 0.08 1.65 2.34 -67.71 -0.16 1.50 16 3 H 0.08 1.60 5.30 -51.93 -0.28 1.32 16 4 C -0.05 -1.08 3.06 -27.88 -0.09 -1.17 16 5 C -0.53 -13.92 7.54 -34.44 -0.26 -14.18 16 6 H 0.09 2.38 4.43 -52.49 -0.23 2.15 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -26.48 13.96 55.43 0.77 -25.71 16 9 Si 0.87 21.42 27.36 -169.99 -4.65 16.77 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.38 6.71 56.52 0.38 -6.00 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 N -0.51 -9.98 4.31 -218.76 -0.94 -10.93 16 14 C 0.05 0.95 4.37 -3.83 -0.02 0.93 16 15 C -0.11 -1.83 6.09 -26.65 -0.16 -2.00 16 16 C -0.12 -1.98 6.00 -26.61 -0.16 -2.14 16 17 C -0.10 -1.86 5.21 -26.65 -0.14 -2.00 16 18 C 0.07 1.33 1.55 -67.72 -0.10 1.22 16 19 H 0.11 2.67 4.77 -51.93 -0.25 2.42 16 20 C 0.08 1.50 5.52 37.16 0.21 1.70 16 21 O -0.56 -9.37 12.76 -35.23 -0.45 -9.82 16 22 H 0.04 0.76 6.87 -51.93 -0.36 0.40 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.01 0.34 7.58 -51.93 -0.39 -0.05 16 26 H 0.02 0.45 5.02 -51.93 -0.26 0.19 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.06 1.10 6.61 -51.93 -0.34 0.76 16 29 H 0.05 1.05 6.35 -51.92 -0.33 0.72 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 1.21 7.58 -51.92 -0.39 0.82 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.10 5.22 -51.93 -0.27 0.83 16 38 H 0.36 4.29 9.12 45.56 0.42 4.70 16 LS Contribution 277.90 15.07 4.19 4.19 Total: -1.00 -29.19 277.90 -6.95 -36.14 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.23 Total: 5.68 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -0.64 Total: -16.32 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.17 Total: -36.64 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.45 Total: -9.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.65 Total: 16.77 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.19 -6.95 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.819 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds