Wall clock time and date at job start Mon Mar 30 2020 04:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47435 * 2 1 4 4 C 1.53002 * 109.46621 * 240.00421 * 2 1 3 5 5 C 1.50702 * 109.46933 * 171.44996 * 4 2 1 6 6 H 1.07999 * 120.00242 * 354.31822 * 5 4 2 7 7 C 1.37885 * 120.00146 * 174.31483 * 5 4 2 8 8 N 1.31511 * 119.99992 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99740 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46815 * 269.99607 * 9 7 5 11 11 H 1.48499 * 109.47252 * 29.99888 * 9 7 5 12 12 H 1.48500 * 109.46671 * 150.00004 * 9 7 5 13 13 N 1.46903 * 109.47120 * 120.00966 * 2 1 3 14 14 C 1.46845 * 111.00130 * 72.09594 * 13 2 1 15 15 C 1.53039 * 109.52343 * 185.83900 * 14 13 2 16 16 C 1.53120 * 109.27795 * 300.82284 * 15 14 13 17 17 C 1.53118 * 109.16135 * 57.65069 * 16 15 14 18 18 C 1.46850 * 110.99749 * 196.30694 * 13 2 1 19 19 H 1.08992 * 109.46052 * 294.17403 * 18 13 2 20 20 C 1.53004 * 109.46276 * 54.14240 * 18 13 2 21 21 O 1.42900 * 109.46725 * 63.11586 * 20 18 13 22 22 H 1.08996 * 109.47451 * 174.83802 * 1 2 3 23 23 H 1.09004 * 109.46688 * 294.84184 * 1 2 3 24 24 H 1.09000 * 109.47051 * 54.83737 * 1 2 3 25 25 H 1.08994 * 109.47307 * 51.45623 * 4 2 1 26 26 H 1.08995 * 109.47642 * 291.44987 * 4 2 1 27 27 H 0.96993 * 120.00167 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.46633 * 305.85899 * 14 13 2 29 29 H 1.09008 * 109.46137 * 65.83746 * 14 13 2 30 30 H 1.09000 * 109.50361 * 60.75884 * 15 14 13 31 31 H 1.08995 * 109.50350 * 180.84332 * 15 14 13 32 32 H 1.08997 * 109.52329 * 177.55790 * 16 15 14 33 33 H 1.08997 * 109.52471 * 297.74755 * 16 15 14 34 34 H 1.09009 * 109.50121 * 62.28926 * 17 16 15 35 35 H 1.09005 * 109.50393 * 182.36481 * 17 16 15 36 36 H 1.09001 * 109.46890 * 183.11307 * 20 18 13 37 37 H 1.08994 * 109.47132 * 303.11874 * 20 18 13 38 38 H 0.96703 * 113.99624 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5320 -0.5409 -1.3596 6 1 4.0505 0.1053 -0.6669 7 6 4.2353 -1.2011 -2.3448 8 7 5.5374 -1.0434 -2.4413 9 14 3.3384 -2.3184 -3.5434 10 1 3.2951 -3.6983 -2.9961 11 1 1.9534 -1.8210 -3.7422 12 1 4.0539 -2.3243 -4.8447 13 7 2.0197 -0.6927 1.1993 14 6 1.7978 -2.1408 1.0982 15 6 2.1844 -2.8109 2.4186 16 6 3.6574 -2.5212 2.7202 17 6 3.8712 -1.0059 2.7723 18 6 3.4357 -0.3881 1.4417 19 1 4.0395 -0.8021 0.6342 20 6 3.6287 1.1287 1.4963 21 8 2.8939 1.6629 2.5994 22 1 -0.3634 -1.0234 -0.0925 23 1 -0.3633 0.4318 0.9326 24 1 -0.3633 0.5918 -0.8401 25 1 1.5573 -0.3031 -2.1326 26 1 1.8067 -1.7834 -1.1764 27 1 6.0322 -1.5081 -3.1341 28 1 0.7458 -2.3332 0.8876 29 1 2.4096 -2.5465 0.2924 30 1 1.5638 -2.4156 3.2228 31 1 2.0337 -3.8874 2.3382 32 1 3.9256 -2.9601 3.6812 33 1 4.2810 -2.9502 1.9360 34 1 3.2770 -0.5822 3.5821 35 1 4.9261 -0.7929 2.9451 36 1 4.6875 1.3559 1.6209 37 1 3.2680 1.5745 0.5695 38 1 2.9702 2.6221 2.6952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882700.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:32 Heat of formation + Delta-G solvation = -70.358047 kcal Electronic energy + Delta-G solvation = -17571.952615 eV Core-core repulsion = 15027.332454 eV Total energy + Delta-G solvation = -2544.620161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77569 -37.22709 -36.19601 -34.45425 -32.38906 -31.10683 -29.77938 -27.06486 -25.22542 -24.36677 -22.31330 -21.12086 -20.15469 -18.70840 -17.96693 -17.18249 -16.58101 -15.97192 -15.42234 -15.32656 -14.79756 -14.65141 -14.22499 -13.99823 -13.84150 -13.75213 -13.30310 -13.19468 -12.60177 -12.48675 -12.35435 -12.23756 -11.96650 -11.66301 -11.58070 -11.49464 -11.16524 -10.99400 -10.85133 -10.72846 -10.45843 -8.78912 -8.23911 -6.23384 1.29317 1.33047 1.42659 2.34975 3.05008 3.24422 3.63170 3.99433 4.03643 4.11112 4.24390 4.45941 4.50043 4.59475 4.60626 4.70505 4.74116 4.85838 4.97617 5.00662 5.02617 5.10816 5.14033 5.17237 5.21637 5.30537 5.32272 5.39910 5.48890 5.56918 5.67853 5.74306 6.32499 6.51275 6.52344 6.80170 7.05370 7.37352 8.88431 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023425 B = 0.010943 C = 0.010829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.033282 B = 2558.180547 C = 2585.032564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.043 4.043 5 C -0.517 4.517 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.255 1.255 12 H -0.289 1.289 13 N -0.502 5.502 14 C 0.048 3.952 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.099 4.099 18 C 0.065 3.935 19 H 0.067 0.933 20 C 0.091 3.909 21 O -0.565 6.565 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.010 0.990 26 H 0.019 0.981 27 H 0.262 0.738 28 H 0.075 0.925 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 0.229 8.904 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.081 4.081 5 C -0.555 4.555 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.755 3.245 10 H -0.200 1.200 11 H -0.179 1.179 12 H -0.215 1.215 13 N -0.226 5.226 14 C -0.080 4.080 15 C -0.144 4.144 16 C -0.156 4.156 17 C -0.137 4.137 18 C -0.043 4.043 19 H 0.085 0.915 20 C 0.014 3.986 21 O -0.371 6.371 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.029 0.971 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.529 -0.275 9.288 11.960 hybrid contribution 0.939 -0.175 -1.933 2.156 sum -6.590 -0.450 7.355 9.886 Atomic orbital electron populations 1.21721 0.93826 1.01453 1.01660 1.21682 0.95289 0.97706 0.88007 0.91430 1.20284 0.95333 0.96553 0.95955 1.21704 0.92435 1.27064 1.14298 0.91220 1.25754 0.95236 0.98242 0.99101 1.70020 1.08029 1.45174 1.35315 0.85965 0.79886 0.79837 0.78838 1.19990 1.17852 1.21523 1.62371 1.16834 1.07793 1.35578 1.22137 1.00273 0.88689 0.96924 1.21529 0.96119 0.99819 0.96927 1.21559 0.96845 0.95957 1.01282 1.21442 0.99867 0.95358 0.96993 1.22084 0.90589 0.93636 0.97992 0.91523 1.22124 0.93796 0.94128 0.88601 1.86528 1.73530 1.27042 1.50019 0.93068 0.91754 0.92230 0.97127 0.96307 0.92899 0.90675 0.96642 0.90849 0.90695 0.90223 0.94246 0.91084 0.92647 0.94219 0.94225 0.76838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.14 71.98 0.66 -3.48 16 2 C 0.08 3.21 2.34 44.92 0.11 3.32 16 3 H 0.07 2.79 5.30 -2.39 -0.01 2.78 16 4 C -0.04 -1.96 3.06 29.85 0.09 -1.87 16 5 C -0.52 -27.91 7.54 25.60 0.19 -27.72 16 6 H 0.07 3.95 4.43 -2.91 -0.01 3.94 16 7 C 0.01 0.78 5.47 84.66 0.46 1.24 16 8 N -0.94 -57.36 13.96 21.45 0.30 -57.06 16 9 Si 0.93 44.41 27.36 68.60 1.88 46.29 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.25 -11.55 6.71 99.48 0.67 -10.88 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 N -0.50 -19.10 4.31 -846.02 -3.65 -22.75 16 14 C 0.05 1.74 4.37 86.33 0.38 2.12 16 15 C -0.11 -3.20 6.09 30.65 0.19 -3.02 16 16 C -0.12 -3.75 6.00 30.67 0.18 -3.57 16 17 C -0.10 -3.40 5.21 30.64 0.16 -3.24 16 18 C 0.07 2.61 1.55 44.94 0.07 2.68 16 19 H 0.07 3.30 4.77 -2.39 -0.01 3.29 16 20 C 0.09 3.36 5.52 71.98 0.40 3.75 16 21 O -0.57 -17.83 12.76 -148.98 -1.90 -19.73 16 22 H 0.05 1.57 6.87 -2.39 -0.02 1.55 16 23 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.01 0.49 7.58 -2.39 -0.02 0.47 16 26 H 0.02 0.87 5.02 -2.39 -0.01 0.86 16 27 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.07 2.49 6.61 -2.39 -0.02 2.48 16 29 H 0.02 0.66 6.35 -2.38 -0.02 0.65 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 2.41 7.58 -2.38 -0.02 2.39 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.58 5.22 -2.39 -0.01 1.57 16 38 H 0.38 8.29 9.12 -74.05 -0.68 7.61 16 Total: -1.00 -62.68 277.90 -0.15 -62.84 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.34 Total: 20.22 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 2.88 Total: -29.80 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -3.35 Total: -79.82 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -1.90 Total: -19.73 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -62.68 -0.15 -62.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882700.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.521 kcal (2) G-P(sol) polarization free energy of solvation -62.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds