Wall clock time and date at job start Mon Mar 30 2020 04:13:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09010 * 109.47026 * 2 1
4 4 C 1.52990 * 109.47627 * 239.99552 * 2 1 3
5 5 C 1.50696 * 109.47405 * 174.29218 * 4 2 1
6 6 H 1.07998 * 120.00324 * 355.23728 * 5 4 2
7 7 C 1.37877 * 120.00074 * 175.24265 * 5 4 2
8 8 N 1.31523 * 119.99989 * 179.97438 * 7 5 4
9 9 Si 1.86798 * 120.00176 * 359.97438 * 7 5 4
10 10 H 1.48504 * 109.47208 * 89.99825 * 9 7 5
11 11 H 1.48503 * 109.47596 * 210.00106 * 9 7 5
12 12 H 1.48498 * 109.47328 * 330.00390 * 9 7 5
13 13 N 1.46903 * 109.46833 * 119.99107 * 2 1 3
14 14 C 1.47903 * 110.99903 * 76.41634 * 13 2 1
15 15 C 1.53985 * 107.05880 * 214.15756 * 14 13 2
16 16 C 1.54591 * 105.14147 * 1.22051 * 15 14 13
17 17 C 1.48529 * 111.00252 * 319.01950 * 13 2 1
18 18 H 1.09000 * 110.66701 * 41.28534 * 17 13 2
19 19 C 1.52997 * 110.66793 * 278.15517 * 17 13 2
20 20 C 1.53000 * 109.47285 * 69.04423 * 19 17 13
21 21 O 1.42901 * 109.47087 * 173.69354 * 20 19 17
22 22 H 1.09001 * 109.47385 * 188.31315 * 1 2 3
23 23 H 1.09004 * 109.47421 * 308.32018 * 1 2 3
24 24 H 1.09000 * 109.46822 * 68.31743 * 1 2 3
25 25 H 1.09007 * 109.47161 * 294.28784 * 4 2 1
26 26 H 1.09000 * 109.47584 * 54.28920 * 4 2 1
27 27 H 0.96999 * 119.99712 * 179.97438 * 8 7 5
28 28 H 1.09003 * 109.91353 * 333.50945 * 14 13 2
29 29 H 1.08995 * 109.91985 * 94.79861 * 14 13 2
30 30 H 1.09002 * 110.31144 * 120.13975 * 15 14 13
31 31 H 1.09002 * 110.30650 * 242.20942 * 15 14 13
32 32 H 1.09005 * 110.72370 * 140.31650 * 16 15 14
33 33 H 1.08998 * 110.72936 * 263.42117 * 16 15 14
34 34 H 1.08996 * 109.47292 * 189.04205 * 19 17 13
35 35 H 1.08999 * 109.46840 * 309.04357 * 19 17 13
36 36 H 1.09001 * 109.46888 * 293.69232 * 20 19 17
37 37 H 1.09001 * 109.47244 * 53.69260 * 20 19 17
38 38 H 0.96700 * 113.99932 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5404 -0.6001 -1.3217
6 1 4.0693 0.0016 -0.5974
7 6 4.2379 -1.2572 -2.3130
8 7 5.5473 -1.1510 -2.3767
9 14 3.3234 -2.2983 -3.5655
10 1 2.9498 -1.4567 -4.7306
11 1 4.1976 -3.4101 -4.0181
12 1 2.0954 -2.8558 -2.9438
13 7 2.0196 -0.6923 1.1996
14 6 1.8905 -2.1586 1.0551
15 6 1.5692 -2.7235 2.4511
16 6 1.4947 -1.4892 3.3788
17 6 1.2101 -0.3300 2.3910
18 1 0.1504 -0.2910 2.1387
19 6 1.6769 1.0046 2.9756
20 6 1.3192 2.1369 2.0109
21 8 1.6213 3.3942 2.6192
22 1 -0.3634 -1.0169 0.1486
23 1 -0.3634 0.6372 0.8063
24 1 -0.3633 0.3797 -0.9550
25 1 1.7627 -1.7743 -1.1993
26 1 1.5957 -0.2700 -2.1362
27 1 6.0381 -1.6136 -3.0738
28 1 1.0809 -2.3937 0.3641
29 1 2.8274 -2.5798 0.6906
30 1 0.6121 -3.2448 2.4372
31 1 2.3614 -3.3971 2.7781
32 1 0.6801 -1.5940 4.0955
33 1 2.4428 -1.3363 3.8944
34 1 1.1845 1.1740 3.9331
35 1 2.7568 0.9793 3.1218
36 1 1.8978 2.0289 1.0934
37 1 0.2555 2.0927 1.7770
38 1 1.4197 4.1589 2.0627
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695885175.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:44
Heat of formation + Delta-G solvation = -44.834558 kcal
Electronic energy + Delta-G solvation = -17051.546108 eV
Core-core repulsion = 14508.032729 eV
Total energy + Delta-G solvation = -2543.513379 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.54069 -36.55556 -34.32354 -32.29109 -31.84578 -28.64206 -27.90278 -26.75424
-23.39418 -22.59612 -20.92475 -19.90355 -18.49860 -17.07435 -16.63067 -16.42674
-14.93312 -14.76098 -14.19542 -13.87880 -13.56497 -13.30099 -12.97979 -12.36147
-12.23142 -11.96581 -11.78773 -11.55902 -11.43341 -11.03642 -10.95107 -10.74569
-10.65325 -10.44565 -10.21735 -10.02637 -9.88864 -9.59435 -9.24369 -8.99791
-8.46303 -7.55482 -5.94720 -3.89815 3.31748 3.40085 3.41309 4.37703
4.49939 4.53121 4.99684 5.16286 5.25941 5.32330 5.38888 5.48359
5.57236 5.62840 5.76924 5.78560 5.81247 5.93624 5.99969 6.07175
6.13980 6.15837 6.33292 6.37125 6.45170 6.54334 6.63072 6.77409
6.82178 7.07700 7.36326 7.67280 7.78501 7.79972 7.94341 8.66974
9.17506 9.67656 11.19027
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025752 B = 0.008942 C = 0.007875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.022075 B = 3130.394671 C = 3554.764633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.077 3.923
3 H 0.085 0.915
4 C -0.017 4.017
5 C -0.495 4.495
6 H 0.079 0.921
7 C 0.064 3.936
8 N -0.905 5.905
9 Si 0.871 3.129
10 H -0.280 1.280
11 H -0.289 1.289
12 H -0.268 1.268
13 N -0.483 5.483
14 C 0.043 3.957
15 C -0.133 4.133
16 C -0.115 4.115
17 C 0.051 3.949
18 H 0.058 0.942
19 C -0.099 4.099
20 C 0.062 3.938
21 O -0.580 6.580
22 H 0.049 0.951
23 H 0.052 0.948
24 H 0.056 0.944
25 H 0.023 0.977
26 H 0.012 0.988
27 H 0.260 0.740
28 H 0.041 0.959
29 H 0.088 0.912
30 H 0.057 0.943
31 H 0.067 0.933
32 H 0.062 0.938
33 H 0.073 0.927
34 H 0.063 0.937
35 H 0.078 0.922
36 H 0.069 0.931
37 H 0.038 0.962
38 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.380 1.480 8.698 14.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.249 4.249
2 C -0.031 4.031
3 H 0.103 0.897
4 C -0.055 4.055
5 C -0.533 4.533
6 H 0.097 0.903
7 C -0.136 4.136
8 N -0.545 5.545
9 Si 0.699 3.301
10 H -0.206 1.206
11 H -0.215 1.215
12 H -0.193 1.193
13 N -0.206 5.206
14 C -0.085 4.085
15 C -0.171 4.171
16 C -0.153 4.153
17 C -0.057 4.057
18 H 0.076 0.924
19 C -0.137 4.137
20 C -0.015 4.015
21 O -0.385 6.385
22 H 0.068 0.932
23 H 0.071 0.929
24 H 0.075 0.925
25 H 0.041 0.959
26 H 0.030 0.970
27 H 0.070 0.930
28 H 0.060 0.940
29 H 0.107 0.893
30 H 0.076 0.924
31 H 0.086 0.914
32 H 0.080 0.920
33 H 0.092 0.908
34 H 0.082 0.918
35 H 0.097 0.903
36 H 0.087 0.913
37 H 0.056 0.944
38 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -10.480 1.168 9.134 13.951
hybrid contribution -1.469 -0.534 -1.511 2.174
sum -11.949 0.634 7.623 14.187
Atomic orbital electron populations
1.22671 0.99759 1.01126 1.01326 1.22063 0.89924 0.99540 0.91590
0.89723 1.19883 0.98132 0.95705 0.91755 1.21045 0.89362 1.29725
1.13168 0.90288 1.25008 0.94653 0.96522 0.97444 1.69917 1.06224
1.44175 1.34156 0.86925 0.80109 0.80705 0.82331 1.20579 1.21545
1.19319 1.64951 1.49163 1.04580 1.01945 1.22781 1.01862 0.89025
0.94793 1.22448 1.00928 0.97640 0.96130 1.22446 1.01624 0.94262
0.96978 1.22910 0.96433 0.94078 0.92318 0.92433 1.21360 1.02931
0.91777 0.97592 1.22744 0.98427 0.83259 0.97026 1.86431 1.89034
1.16082 1.47002 0.93167 0.92922 0.92499 0.95911 0.96975 0.93003
0.94036 0.89335 0.92438 0.91382 0.91969 0.90825 0.91795 0.90346
0.91295 0.94410 0.77898
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.99 7.72 37.16 0.29 -2.71 16
2 C 0.08 1.48 1.87 -67.72 -0.13 1.35 16
3 H 0.09 1.69 5.14 -51.92 -0.27 1.42 16
4 C -0.02 -0.41 3.12 -27.89 -0.09 -0.49 16
5 C -0.49 -13.82 9.32 -34.44 -0.32 -14.14 16
6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16
7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16
8 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16
9 Si 0.87 21.67 27.57 -169.99 -4.69 16.99 16
10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
12 H -0.27 -6.39 6.41 56.52 0.36 -6.03 16
13 N -0.48 -9.00 4.87 -214.74 -1.05 -10.05 16
14 C 0.04 0.79 4.94 -2.76 -0.01 0.77 16
15 C -0.13 -1.91 6.93 -25.38 -0.18 -2.09 16
16 C -0.12 -1.56 6.50 -24.87 -0.16 -1.73 16
17 C 0.05 0.77 2.20 -65.79 -0.14 0.63 16
18 H 0.06 0.84 5.35 -51.93 -0.28 0.56 16
19 C -0.10 -1.47 5.32 -26.73 -0.14 -1.61 16
20 C 0.06 0.91 5.84 37.16 0.22 1.12 16
21 O -0.58 -8.23 13.66 -35.23 -0.48 -8.71 16
22 H 0.05 0.78 6.82 -51.93 -0.35 0.43 16
23 H 0.05 0.73 4.45 -51.93 -0.23 0.50 16
24 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16
25 H 0.02 0.54 4.67 -51.92 -0.24 0.29 16
26 H 0.01 0.28 7.79 -51.93 -0.40 -0.12 16
27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
28 H 0.04 0.76 5.44 -51.93 -0.28 0.47 16
29 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16
36 H 0.07 1.13 5.00 -51.93 -0.26 0.87 16
37 H 0.04 0.50 6.44 -51.93 -0.33 0.16 16
38 H 0.37 3.60 9.12 45.56 0.42 4.01 16
LS Contribution 281.43 15.07 4.24 4.24
Total: -1.00 -31.27 281.43 -7.17 -38.44
By element:
Atomic # 1 Polarization: 8.69 SS G_CDS: -5.21 Total: 3.48 kcal
Atomic # 6 Polarization: -16.37 SS G_CDS: -0.77 Total: -17.14 kcal
Atomic # 7 Polarization: -37.02 SS G_CDS: -0.27 Total: -37.29 kcal
Atomic # 8 Polarization: -8.23 SS G_CDS: -0.48 Total: -8.71 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -4.69 Total: 16.99 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -31.27 -7.17 -38.44 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885175.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.397 kcal
(2) G-P(sol) polarization free energy of solvation -31.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds