Wall clock time and date at job start Mon Mar 30 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47026 * 2 1 4 4 C 1.52990 * 109.47627 * 239.99552 * 2 1 3 5 5 C 1.50696 * 109.47405 * 174.29218 * 4 2 1 6 6 H 1.07998 * 120.00324 * 355.23728 * 5 4 2 7 7 C 1.37877 * 120.00074 * 175.24265 * 5 4 2 8 8 N 1.31523 * 119.99989 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47208 * 89.99825 * 9 7 5 11 11 H 1.48503 * 109.47596 * 210.00106 * 9 7 5 12 12 H 1.48498 * 109.47328 * 330.00390 * 9 7 5 13 13 N 1.46903 * 109.46833 * 119.99107 * 2 1 3 14 14 C 1.47903 * 110.99903 * 76.41634 * 13 2 1 15 15 C 1.53985 * 107.05880 * 214.15756 * 14 13 2 16 16 C 1.54591 * 105.14147 * 1.22051 * 15 14 13 17 17 C 1.48529 * 111.00252 * 319.01950 * 13 2 1 18 18 H 1.09000 * 110.66701 * 41.28534 * 17 13 2 19 19 C 1.52997 * 110.66793 * 278.15517 * 17 13 2 20 20 C 1.53000 * 109.47285 * 69.04423 * 19 17 13 21 21 O 1.42901 * 109.47087 * 173.69354 * 20 19 17 22 22 H 1.09001 * 109.47385 * 188.31315 * 1 2 3 23 23 H 1.09004 * 109.47421 * 308.32018 * 1 2 3 24 24 H 1.09000 * 109.46822 * 68.31743 * 1 2 3 25 25 H 1.09007 * 109.47161 * 294.28784 * 4 2 1 26 26 H 1.09000 * 109.47584 * 54.28920 * 4 2 1 27 27 H 0.96999 * 119.99712 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.91353 * 333.50945 * 14 13 2 29 29 H 1.08995 * 109.91985 * 94.79861 * 14 13 2 30 30 H 1.09002 * 110.31144 * 120.13975 * 15 14 13 31 31 H 1.09002 * 110.30650 * 242.20942 * 15 14 13 32 32 H 1.09005 * 110.72370 * 140.31650 * 16 15 14 33 33 H 1.08998 * 110.72936 * 263.42117 * 16 15 14 34 34 H 1.08996 * 109.47292 * 189.04205 * 19 17 13 35 35 H 1.08999 * 109.46840 * 309.04357 * 19 17 13 36 36 H 1.09001 * 109.46888 * 293.69232 * 20 19 17 37 37 H 1.09001 * 109.47244 * 53.69260 * 20 19 17 38 38 H 0.96700 * 113.99932 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5404 -0.6001 -1.3217 6 1 4.0693 0.0016 -0.5974 7 6 4.2379 -1.2572 -2.3130 8 7 5.5473 -1.1510 -2.3767 9 14 3.3234 -2.2983 -3.5655 10 1 2.9498 -1.4567 -4.7306 11 1 4.1976 -3.4101 -4.0181 12 1 2.0954 -2.8558 -2.9438 13 7 2.0196 -0.6923 1.1996 14 6 1.8905 -2.1586 1.0551 15 6 1.5692 -2.7235 2.4511 16 6 1.4947 -1.4892 3.3788 17 6 1.2101 -0.3300 2.3910 18 1 0.1504 -0.2910 2.1387 19 6 1.6769 1.0046 2.9756 20 6 1.3192 2.1369 2.0109 21 8 1.6213 3.3942 2.6192 22 1 -0.3634 -1.0169 0.1486 23 1 -0.3634 0.6372 0.8063 24 1 -0.3633 0.3797 -0.9550 25 1 1.7627 -1.7743 -1.1993 26 1 1.5957 -0.2700 -2.1362 27 1 6.0381 -1.6136 -3.0738 28 1 1.0809 -2.3937 0.3641 29 1 2.8274 -2.5798 0.6906 30 1 0.6121 -3.2448 2.4372 31 1 2.3614 -3.3971 2.7781 32 1 0.6801 -1.5940 4.0955 33 1 2.4428 -1.3363 3.8944 34 1 1.1845 1.1740 3.9331 35 1 2.7568 0.9793 3.1218 36 1 1.8978 2.0289 1.0934 37 1 0.2555 2.0927 1.7770 38 1 1.4197 4.1589 2.0627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:44 Heat of formation + Delta-G solvation = -44.834558 kcal Electronic energy + Delta-G solvation = -17051.546108 eV Core-core repulsion = 14508.032729 eV Total energy + Delta-G solvation = -2543.513379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.54069 -36.55556 -34.32354 -32.29109 -31.84578 -28.64206 -27.90278 -26.75424 -23.39418 -22.59612 -20.92475 -19.90355 -18.49860 -17.07435 -16.63067 -16.42674 -14.93312 -14.76098 -14.19542 -13.87880 -13.56497 -13.30099 -12.97979 -12.36147 -12.23142 -11.96581 -11.78773 -11.55902 -11.43341 -11.03642 -10.95107 -10.74569 -10.65325 -10.44565 -10.21735 -10.02637 -9.88864 -9.59435 -9.24369 -8.99791 -8.46303 -7.55482 -5.94720 -3.89815 3.31748 3.40085 3.41309 4.37703 4.49939 4.53121 4.99684 5.16286 5.25941 5.32330 5.38888 5.48359 5.57236 5.62840 5.76924 5.78560 5.81247 5.93624 5.99969 6.07175 6.13980 6.15837 6.33292 6.37125 6.45170 6.54334 6.63072 6.77409 6.82178 7.07700 7.36326 7.67280 7.78501 7.79972 7.94341 8.66974 9.17506 9.67656 11.19027 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.008942 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.022075 B = 3130.394671 C = 3554.764633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 H 0.085 0.915 4 C -0.017 4.017 5 C -0.495 4.495 6 H 0.079 0.921 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.483 5.483 14 C 0.043 3.957 15 C -0.133 4.133 16 C -0.115 4.115 17 C 0.051 3.949 18 H 0.058 0.942 19 C -0.099 4.099 20 C 0.062 3.938 21 O -0.580 6.580 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.023 0.977 26 H 0.012 0.988 27 H 0.260 0.740 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.380 1.480 8.698 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.031 4.031 3 H 0.103 0.897 4 C -0.055 4.055 5 C -0.533 4.533 6 H 0.097 0.903 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.206 5.206 14 C -0.085 4.085 15 C -0.171 4.171 16 C -0.153 4.153 17 C -0.057 4.057 18 H 0.076 0.924 19 C -0.137 4.137 20 C -0.015 4.015 21 O -0.385 6.385 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.480 1.168 9.134 13.951 hybrid contribution -1.469 -0.534 -1.511 2.174 sum -11.949 0.634 7.623 14.187 Atomic orbital electron populations 1.22671 0.99759 1.01126 1.01326 1.22063 0.89924 0.99540 0.91590 0.89723 1.19883 0.98132 0.95705 0.91755 1.21045 0.89362 1.29725 1.13168 0.90288 1.25008 0.94653 0.96522 0.97444 1.69917 1.06224 1.44175 1.34156 0.86925 0.80109 0.80705 0.82331 1.20579 1.21545 1.19319 1.64951 1.49163 1.04580 1.01945 1.22781 1.01862 0.89025 0.94793 1.22448 1.00928 0.97640 0.96130 1.22446 1.01624 0.94262 0.96978 1.22910 0.96433 0.94078 0.92318 0.92433 1.21360 1.02931 0.91777 0.97592 1.22744 0.98427 0.83259 0.97026 1.86431 1.89034 1.16082 1.47002 0.93167 0.92922 0.92499 0.95911 0.96975 0.93003 0.94036 0.89335 0.92438 0.91382 0.91969 0.90825 0.91795 0.90346 0.91295 0.94410 0.77898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 7.72 37.16 0.29 -2.71 16 2 C 0.08 1.48 1.87 -67.72 -0.13 1.35 16 3 H 0.09 1.69 5.14 -51.92 -0.27 1.42 16 4 C -0.02 -0.41 3.12 -27.89 -0.09 -0.49 16 5 C -0.49 -13.82 9.32 -34.44 -0.32 -14.14 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 9 Si 0.87 21.67 27.57 -169.99 -4.69 16.99 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.39 6.41 56.52 0.36 -6.03 16 13 N -0.48 -9.00 4.87 -214.74 -1.05 -10.05 16 14 C 0.04 0.79 4.94 -2.76 -0.01 0.77 16 15 C -0.13 -1.91 6.93 -25.38 -0.18 -2.09 16 16 C -0.12 -1.56 6.50 -24.87 -0.16 -1.73 16 17 C 0.05 0.77 2.20 -65.79 -0.14 0.63 16 18 H 0.06 0.84 5.35 -51.93 -0.28 0.56 16 19 C -0.10 -1.47 5.32 -26.73 -0.14 -1.61 16 20 C 0.06 0.91 5.84 37.16 0.22 1.12 16 21 O -0.58 -8.23 13.66 -35.23 -0.48 -8.71 16 22 H 0.05 0.78 6.82 -51.93 -0.35 0.43 16 23 H 0.05 0.73 4.45 -51.93 -0.23 0.50 16 24 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 25 H 0.02 0.54 4.67 -51.92 -0.24 0.29 16 26 H 0.01 0.28 7.79 -51.93 -0.40 -0.12 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.04 0.76 5.44 -51.93 -0.28 0.47 16 29 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.13 5.00 -51.93 -0.26 0.87 16 37 H 0.04 0.50 6.44 -51.93 -0.33 0.16 16 38 H 0.37 3.60 9.12 45.56 0.42 4.01 16 LS Contribution 281.43 15.07 4.24 4.24 Total: -1.00 -31.27 281.43 -7.17 -38.44 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.21 Total: 3.48 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.77 Total: -17.14 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.27 Total: -37.29 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.48 Total: -8.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.69 Total: 16.99 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.27 -7.17 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.397 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds