Wall clock time and date at job start Mon Mar 30 2020 04:13:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09010 * 109.47026 * 2 1
4 4 C 1.52990 * 109.47627 * 239.99552 * 2 1 3
5 5 C 1.50696 * 109.47405 * 174.29218 * 4 2 1
6 6 H 1.07998 * 120.00324 * 355.23728 * 5 4 2
7 7 C 1.37877 * 120.00074 * 175.24265 * 5 4 2
8 8 N 1.31523 * 119.99989 * 179.97438 * 7 5 4
9 9 Si 1.86798 * 120.00176 * 359.97438 * 7 5 4
10 10 H 1.48504 * 109.47208 * 89.99825 * 9 7 5
11 11 H 1.48503 * 109.47596 * 210.00106 * 9 7 5
12 12 H 1.48498 * 109.47328 * 330.00390 * 9 7 5
13 13 N 1.46903 * 109.46833 * 119.99107 * 2 1 3
14 14 C 1.47903 * 110.99903 * 76.41634 * 13 2 1
15 15 C 1.53985 * 107.05880 * 214.15756 * 14 13 2
16 16 C 1.54591 * 105.14147 * 1.22051 * 15 14 13
17 17 C 1.48529 * 111.00252 * 319.01950 * 13 2 1
18 18 H 1.09000 * 110.66701 * 41.28534 * 17 13 2
19 19 C 1.52997 * 110.66793 * 278.15517 * 17 13 2
20 20 C 1.53000 * 109.47285 * 69.04423 * 19 17 13
21 21 O 1.42901 * 109.47087 * 173.69354 * 20 19 17
22 22 H 1.09001 * 109.47385 * 188.31315 * 1 2 3
23 23 H 1.09004 * 109.47421 * 308.32018 * 1 2 3
24 24 H 1.09000 * 109.46822 * 68.31743 * 1 2 3
25 25 H 1.09007 * 109.47161 * 294.28784 * 4 2 1
26 26 H 1.09000 * 109.47584 * 54.28920 * 4 2 1
27 27 H 0.96999 * 119.99712 * 179.97438 * 8 7 5
28 28 H 1.09003 * 109.91353 * 333.50945 * 14 13 2
29 29 H 1.08995 * 109.91985 * 94.79861 * 14 13 2
30 30 H 1.09002 * 110.31144 * 120.13975 * 15 14 13
31 31 H 1.09002 * 110.30650 * 242.20942 * 15 14 13
32 32 H 1.09005 * 110.72370 * 140.31650 * 16 15 14
33 33 H 1.08998 * 110.72936 * 263.42117 * 16 15 14
34 34 H 1.08996 * 109.47292 * 189.04205 * 19 17 13
35 35 H 1.08999 * 109.46840 * 309.04357 * 19 17 13
36 36 H 1.09001 * 109.46888 * 293.69232 * 20 19 17
37 37 H 1.09001 * 109.47244 * 53.69260 * 20 19 17
38 38 H 0.96700 * 113.99932 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0401 -0.7213 -1.2491
5 6 3.5404 -0.6001 -1.3217
6 1 4.0693 0.0016 -0.5974
7 6 4.2379 -1.2572 -2.3130
8 7 5.5473 -1.1510 -2.3767
9 14 3.3234 -2.2983 -3.5655
10 1 2.9498 -1.4567 -4.7306
11 1 4.1976 -3.4101 -4.0181
12 1 2.0954 -2.8558 -2.9438
13 7 2.0196 -0.6923 1.1996
14 6 1.8905 -2.1586 1.0551
15 6 1.5692 -2.7235 2.4511
16 6 1.4947 -1.4892 3.3788
17 6 1.2101 -0.3300 2.3910
18 1 0.1504 -0.2910 2.1387
19 6 1.6769 1.0046 2.9756
20 6 1.3192 2.1369 2.0109
21 8 1.6213 3.3942 2.6192
22 1 -0.3634 -1.0169 0.1486
23 1 -0.3634 0.6372 0.8063
24 1 -0.3633 0.3797 -0.9550
25 1 1.7627 -1.7743 -1.1993
26 1 1.5957 -0.2700 -2.1362
27 1 6.0381 -1.6136 -3.0738
28 1 1.0809 -2.3937 0.3641
29 1 2.8274 -2.5798 0.6906
30 1 0.6121 -3.2448 2.4372
31 1 2.3614 -3.3971 2.7781
32 1 0.6801 -1.5940 4.0955
33 1 2.4428 -1.3363 3.8944
34 1 1.1845 1.1740 3.9331
35 1 2.7568 0.9793 3.1218
36 1 1.8978 2.0289 1.0934
37 1 0.2555 2.0927 1.7770
38 1 1.4197 4.1589 2.0627
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695885175.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:44
Heat of formation + Delta-G solvation = -69.080430 kcal
Electronic energy + Delta-G solvation = -17052.597488 eV
Core-core repulsion = 14508.032729 eV
Total energy + Delta-G solvation = -2544.564759 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-40.87144 -37.69131 -35.91524 -34.20764 -33.16856 -30.33570 -29.35867 -27.99738
-24.99002 -24.18460 -22.21263 -21.20064 -19.93624 -18.84499 -18.20953 -17.73009
-16.44896 -16.12935 -15.84414 -15.12288 -14.95770 -14.69655 -14.52598 -14.02123
-13.75974 -13.64295 -13.06223 -12.91143 -12.82836 -12.59916 -12.25615 -12.15102
-11.99561 -11.95976 -11.59922 -11.54628 -11.34882 -11.21771 -11.19536 -10.69872
-10.44422 -8.93182 -8.20019 -6.19653 1.33924 1.35790 1.46082 2.38762
3.10574 3.24397 3.34316 3.80780 3.95939 4.08053 4.16531 4.19262
4.34244 4.38932 4.49093 4.54517 4.62006 4.70948 4.79019 4.85285
4.93935 5.04698 5.08250 5.09250 5.15993 5.19101 5.22091 5.30162
5.38399 5.46474 5.67054 5.73015 6.30247 6.36916 6.55113 6.88511
6.89765 7.41199 8.97508
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025752 B = 0.008942 C = 0.007875
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1087.022075 B = 3130.394671 C = 3554.764633
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.079 3.921
3 H 0.072 0.928
4 C -0.014 4.014
5 C -0.490 4.490
6 H 0.031 0.969
7 C -0.001 4.001
8 N -0.957 5.957
9 Si 0.943 3.057
10 H -0.270 1.270
11 H -0.289 1.289
12 H -0.248 1.248
13 N -0.513 5.513
14 C 0.042 3.958
15 C -0.126 4.126
16 C -0.111 4.111
17 C 0.054 3.946
18 H 0.076 0.924
19 C -0.097 4.097
20 C 0.066 3.934
21 O -0.594 6.594
22 H 0.056 0.944
23 H 0.076 0.924
24 H 0.064 0.936
25 H 0.025 0.975
26 H 0.017 0.983
27 H 0.261 0.739
28 H 0.042 0.958
29 H 0.044 0.956
30 H 0.083 0.917
31 H 0.069 0.931
32 H 0.095 0.905
33 H 0.064 0.936
34 H 0.084 0.916
35 H 0.050 0.950
36 H 0.043 0.957
37 H 0.060 0.940
38 H 0.394 0.606
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.625 0.971 9.326 17.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.238 4.238
2 C -0.029 4.029
3 H 0.090 0.910
4 C -0.052 4.052
5 C -0.529 4.529
6 H 0.049 0.951
7 C -0.196 4.196
8 N -0.599 5.599
9 Si 0.767 3.233
10 H -0.195 1.195
11 H -0.215 1.215
12 H -0.172 1.172
13 N -0.238 5.238
14 C -0.086 4.086
15 C -0.164 4.164
16 C -0.149 4.149
17 C -0.053 4.053
18 H 0.094 0.906
19 C -0.135 4.135
20 C -0.010 4.010
21 O -0.402 6.402
22 H 0.075 0.925
23 H 0.094 0.906
24 H 0.083 0.917
25 H 0.043 0.957
26 H 0.035 0.965
27 H 0.070 0.930
28 H 0.060 0.940
29 H 0.063 0.937
30 H 0.102 0.898
31 H 0.087 0.913
32 H 0.114 0.886
33 H 0.083 0.917
34 H 0.103 0.897
35 H 0.068 0.932
36 H 0.061 0.939
37 H 0.078 0.922
38 H 0.243 0.757
Dipole moment (debyes) X Y Z Total
from point charges -13.750 0.682 9.771 16.881
hybrid contribution -0.371 -0.274 -1.640 1.704
sum -14.121 0.408 8.130 16.299
Atomic orbital electron populations
1.22532 0.96330 1.02130 1.02769 1.21890 0.92579 0.98272 0.90185
0.90997 1.19832 0.94674 0.96422 0.94248 1.21244 0.92016 1.28143
1.11478 0.95098 1.25944 0.95427 0.98250 1.00020 1.70093 1.08300
1.46012 1.35528 0.85776 0.79254 0.78765 0.79490 1.19504 1.21544
1.17151 1.64821 1.51187 1.04851 1.02922 1.22670 0.99606 0.88971
0.97306 1.22409 1.02295 0.98034 0.93634 1.22473 1.02524 0.92921
0.96937 1.22988 0.96706 0.94594 0.91055 0.90602 1.21356 1.01367
0.92111 0.98711 1.22633 0.99156 0.83471 0.95780 1.86386 1.89302
1.16742 1.47814 0.92539 0.90583 0.91741 0.95686 0.96455 0.93024
0.93977 0.93710 0.89819 0.91254 0.88616 0.91734 0.89734 0.93157
0.93867 0.92170 0.75700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.07 7.72 71.98 0.56 -4.52 16
2 C 0.08 2.99 1.87 44.91 0.08 3.07 16
3 H 0.07 2.91 5.14 -2.38 -0.01 2.89 16
4 C -0.01 -0.67 3.12 29.84 0.09 -0.57 16
5 C -0.49 -28.43 9.32 25.60 0.24 -28.19 16
6 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16
7 C 0.00 -0.08 5.47 84.65 0.46 0.38 16
8 N -0.96 -61.67 13.96 21.45 0.30 -61.37 16
9 Si 0.94 45.06 27.57 68.60 1.89 46.95 16
10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16
12 H -0.25 -10.92 6.41 99.48 0.64 -10.28 16
13 N -0.51 -19.03 4.87 -833.29 -4.06 -23.08 16
14 C 0.04 1.52 4.94 86.44 0.43 1.95 16
15 C -0.13 -3.32 6.93 31.47 0.22 -3.11 16
16 C -0.11 -2.70 6.50 31.80 0.21 -2.49 16
17 C 0.05 1.52 2.20 45.26 0.10 1.62 16
18 H 0.08 1.88 5.35 -2.39 -0.01 1.87 16
19 C -0.10 -2.76 5.32 30.59 0.16 -2.60 16
20 C 0.07 1.84 5.84 71.98 0.42 2.26 16
21 O -0.59 -15.99 13.66 -148.98 -2.04 -18.03 16
22 H 0.06 1.54 6.82 -2.39 -0.02 1.53 16
23 H 0.08 1.79 4.45 -2.38 -0.01 1.78 16
24 H 0.06 1.73 8.11 -2.39 -0.02 1.72 16
25 H 0.02 1.15 4.67 -2.38 -0.01 1.14 16
26 H 0.02 0.78 7.79 -2.39 -0.02 0.76 16
27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16
28 H 0.04 1.47 5.44 -2.39 -0.01 1.46 16
29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
31 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16
32 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16
33 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16
34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
36 H 0.04 1.43 5.00 -2.39 -0.01 1.42 16
37 H 0.06 1.39 6.44 -2.39 -0.02 1.37 16
38 H 0.39 6.95 9.12 -74.06 -0.68 6.27 16
Total: -1.00 -70.30 281.43 -0.63 -70.93
By element:
Atomic # 1 Polarization: 16.49 SS G_CDS: 0.31 Total: 16.79 kcal
Atomic # 6 Polarization: -35.16 SS G_CDS: 2.97 Total: -32.19 kcal
Atomic # 7 Polarization: -80.69 SS G_CDS: -3.76 Total: -84.45 kcal
Atomic # 8 Polarization: -15.99 SS G_CDS: -2.04 Total: -18.03 kcal
Atomic # 14 Polarization: 45.06 SS G_CDS: 1.89 Total: 46.95 kcal
Total: -70.30 -0.63 -70.93 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885175.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.848 kcal
(2) G-P(sol) polarization free energy of solvation -70.297 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.450 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds