Wall clock time and date at job start Mon Mar 30 2020 04:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 109.47026 * 2 1 4 4 C 1.52990 * 109.47627 * 239.99552 * 2 1 3 5 5 C 1.50696 * 109.47405 * 174.29218 * 4 2 1 6 6 H 1.07998 * 120.00324 * 355.23728 * 5 4 2 7 7 C 1.37877 * 120.00074 * 175.24265 * 5 4 2 8 8 N 1.31523 * 119.99989 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00176 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47208 * 89.99825 * 9 7 5 11 11 H 1.48503 * 109.47596 * 210.00106 * 9 7 5 12 12 H 1.48498 * 109.47328 * 330.00390 * 9 7 5 13 13 N 1.46903 * 109.46833 * 119.99107 * 2 1 3 14 14 C 1.47903 * 110.99903 * 76.41634 * 13 2 1 15 15 C 1.53985 * 107.05880 * 214.15756 * 14 13 2 16 16 C 1.54591 * 105.14147 * 1.22051 * 15 14 13 17 17 C 1.48529 * 111.00252 * 319.01950 * 13 2 1 18 18 H 1.09000 * 110.66701 * 41.28534 * 17 13 2 19 19 C 1.52997 * 110.66793 * 278.15517 * 17 13 2 20 20 C 1.53000 * 109.47285 * 69.04423 * 19 17 13 21 21 O 1.42901 * 109.47087 * 173.69354 * 20 19 17 22 22 H 1.09001 * 109.47385 * 188.31315 * 1 2 3 23 23 H 1.09004 * 109.47421 * 308.32018 * 1 2 3 24 24 H 1.09000 * 109.46822 * 68.31743 * 1 2 3 25 25 H 1.09007 * 109.47161 * 294.28784 * 4 2 1 26 26 H 1.09000 * 109.47584 * 54.28920 * 4 2 1 27 27 H 0.96999 * 119.99712 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.91353 * 333.50945 * 14 13 2 29 29 H 1.08995 * 109.91985 * 94.79861 * 14 13 2 30 30 H 1.09002 * 110.31144 * 120.13975 * 15 14 13 31 31 H 1.09002 * 110.30650 * 242.20942 * 15 14 13 32 32 H 1.09005 * 110.72370 * 140.31650 * 16 15 14 33 33 H 1.08998 * 110.72936 * 263.42117 * 16 15 14 34 34 H 1.08996 * 109.47292 * 189.04205 * 19 17 13 35 35 H 1.08999 * 109.46840 * 309.04357 * 19 17 13 36 36 H 1.09001 * 109.46888 * 293.69232 * 20 19 17 37 37 H 1.09001 * 109.47244 * 53.69260 * 20 19 17 38 38 H 0.96700 * 113.99932 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5404 -0.6001 -1.3217 6 1 4.0693 0.0016 -0.5974 7 6 4.2379 -1.2572 -2.3130 8 7 5.5473 -1.1510 -2.3767 9 14 3.3234 -2.2983 -3.5655 10 1 2.9498 -1.4567 -4.7306 11 1 4.1976 -3.4101 -4.0181 12 1 2.0954 -2.8558 -2.9438 13 7 2.0196 -0.6923 1.1996 14 6 1.8905 -2.1586 1.0551 15 6 1.5692 -2.7235 2.4511 16 6 1.4947 -1.4892 3.3788 17 6 1.2101 -0.3300 2.3910 18 1 0.1504 -0.2910 2.1387 19 6 1.6769 1.0046 2.9756 20 6 1.3192 2.1369 2.0109 21 8 1.6213 3.3942 2.6192 22 1 -0.3634 -1.0169 0.1486 23 1 -0.3634 0.6372 0.8063 24 1 -0.3633 0.3797 -0.9550 25 1 1.7627 -1.7743 -1.1993 26 1 1.5957 -0.2700 -2.1362 27 1 6.0381 -1.6136 -3.0738 28 1 1.0809 -2.3937 0.3641 29 1 2.8274 -2.5798 0.6906 30 1 0.6121 -3.2448 2.4372 31 1 2.3614 -3.3971 2.7781 32 1 0.6801 -1.5940 4.0955 33 1 2.4428 -1.3363 3.8944 34 1 1.1845 1.1740 3.9331 35 1 2.7568 0.9793 3.1218 36 1 1.8978 2.0289 1.0934 37 1 0.2555 2.0927 1.7770 38 1 1.4197 4.1589 2.0627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:44 Heat of formation + Delta-G solvation = -69.080430 kcal Electronic energy + Delta-G solvation = -17052.597488 eV Core-core repulsion = 14508.032729 eV Total energy + Delta-G solvation = -2544.564759 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87144 -37.69131 -35.91524 -34.20764 -33.16856 -30.33570 -29.35867 -27.99738 -24.99002 -24.18460 -22.21263 -21.20064 -19.93624 -18.84499 -18.20953 -17.73009 -16.44896 -16.12935 -15.84414 -15.12288 -14.95770 -14.69655 -14.52598 -14.02123 -13.75974 -13.64295 -13.06223 -12.91143 -12.82836 -12.59916 -12.25615 -12.15102 -11.99561 -11.95976 -11.59922 -11.54628 -11.34882 -11.21771 -11.19536 -10.69872 -10.44422 -8.93182 -8.20019 -6.19653 1.33924 1.35790 1.46082 2.38762 3.10574 3.24397 3.34316 3.80780 3.95939 4.08053 4.16531 4.19262 4.34244 4.38932 4.49093 4.54517 4.62006 4.70948 4.79019 4.85285 4.93935 5.04698 5.08250 5.09250 5.15993 5.19101 5.22091 5.30162 5.38399 5.46474 5.67054 5.73015 6.30247 6.36916 6.55113 6.88511 6.89765 7.41199 8.97508 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025752 B = 0.008942 C = 0.007875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.022075 B = 3130.394671 C = 3554.764633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.072 0.928 4 C -0.014 4.014 5 C -0.490 4.490 6 H 0.031 0.969 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.513 5.513 14 C 0.042 3.958 15 C -0.126 4.126 16 C -0.111 4.111 17 C 0.054 3.946 18 H 0.076 0.924 19 C -0.097 4.097 20 C 0.066 3.934 21 O -0.594 6.594 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.025 0.975 26 H 0.017 0.983 27 H 0.261 0.739 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 0.971 9.326 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 H 0.090 0.910 4 C -0.052 4.052 5 C -0.529 4.529 6 H 0.049 0.951 7 C -0.196 4.196 8 N -0.599 5.599 9 Si 0.767 3.233 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.238 5.238 14 C -0.086 4.086 15 C -0.164 4.164 16 C -0.149 4.149 17 C -0.053 4.053 18 H 0.094 0.906 19 C -0.135 4.135 20 C -0.010 4.010 21 O -0.402 6.402 22 H 0.075 0.925 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -13.750 0.682 9.771 16.881 hybrid contribution -0.371 -0.274 -1.640 1.704 sum -14.121 0.408 8.130 16.299 Atomic orbital electron populations 1.22532 0.96330 1.02130 1.02769 1.21890 0.92579 0.98272 0.90185 0.90997 1.19832 0.94674 0.96422 0.94248 1.21244 0.92016 1.28143 1.11478 0.95098 1.25944 0.95427 0.98250 1.00020 1.70093 1.08300 1.46012 1.35528 0.85776 0.79254 0.78765 0.79490 1.19504 1.21544 1.17151 1.64821 1.51187 1.04851 1.02922 1.22670 0.99606 0.88971 0.97306 1.22409 1.02295 0.98034 0.93634 1.22473 1.02524 0.92921 0.96937 1.22988 0.96706 0.94594 0.91055 0.90602 1.21356 1.01367 0.92111 0.98711 1.22633 0.99156 0.83471 0.95780 1.86386 1.89302 1.16742 1.47814 0.92539 0.90583 0.91741 0.95686 0.96455 0.93024 0.93977 0.93710 0.89819 0.91254 0.88616 0.91734 0.89734 0.93157 0.93867 0.92170 0.75700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 7.72 71.98 0.56 -4.52 16 2 C 0.08 2.99 1.87 44.91 0.08 3.07 16 3 H 0.07 2.91 5.14 -2.38 -0.01 2.89 16 4 C -0.01 -0.67 3.12 29.84 0.09 -0.57 16 5 C -0.49 -28.43 9.32 25.60 0.24 -28.19 16 6 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 7 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 8 N -0.96 -61.67 13.96 21.45 0.30 -61.37 16 9 Si 0.94 45.06 27.57 68.60 1.89 46.95 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.25 -10.92 6.41 99.48 0.64 -10.28 16 13 N -0.51 -19.03 4.87 -833.29 -4.06 -23.08 16 14 C 0.04 1.52 4.94 86.44 0.43 1.95 16 15 C -0.13 -3.32 6.93 31.47 0.22 -3.11 16 16 C -0.11 -2.70 6.50 31.80 0.21 -2.49 16 17 C 0.05 1.52 2.20 45.26 0.10 1.62 16 18 H 0.08 1.88 5.35 -2.39 -0.01 1.87 16 19 C -0.10 -2.76 5.32 30.59 0.16 -2.60 16 20 C 0.07 1.84 5.84 71.98 0.42 2.26 16 21 O -0.59 -15.99 13.66 -148.98 -2.04 -18.03 16 22 H 0.06 1.54 6.82 -2.39 -0.02 1.53 16 23 H 0.08 1.79 4.45 -2.38 -0.01 1.78 16 24 H 0.06 1.73 8.11 -2.39 -0.02 1.72 16 25 H 0.02 1.15 4.67 -2.38 -0.01 1.14 16 26 H 0.02 0.78 7.79 -2.39 -0.02 0.76 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.04 1.47 5.44 -2.39 -0.01 1.46 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.06 1.69 8.06 -2.39 -0.02 1.67 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.43 5.00 -2.39 -0.01 1.42 16 37 H 0.06 1.39 6.44 -2.39 -0.02 1.37 16 38 H 0.39 6.95 9.12 -74.06 -0.68 6.27 16 Total: -1.00 -70.30 281.43 -0.63 -70.93 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.31 Total: 16.79 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 2.97 Total: -32.19 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.76 Total: -84.45 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -2.04 Total: -18.03 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.89 Total: 46.95 kcal Total: -70.30 -0.63 -70.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.848 kcal (2) G-P(sol) polarization free energy of solvation -70.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds