Wall clock time and date at job start Mon Mar 30 2020 04:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47390 * 2 1
4 4 C 1.53003 * 109.47197 * 119.99674 * 2 1 3
5 5 C 1.50700 * 109.47510 * 185.00093 * 4 2 1
6 6 H 1.07998 * 119.99321 * 0.02562 * 5 4 2
7 7 C 1.37871 * 120.00261 * 179.97438 * 5 4 2
8 8 N 1.31519 * 119.99848 * 0.02562 * 7 5 4
9 9 Si 1.86796 * 120.00052 * 180.02562 * 7 5 4
10 10 H 1.48493 * 109.47274 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47213 * 120.00380 * 9 7 5
12 12 H 1.48501 * 109.47121 * 240.00275 * 9 7 5
13 13 N 1.46897 * 109.47530 * 239.99832 * 2 1 3
14 14 C 1.48538 * 110.99793 * 312.33464 * 13 2 1
15 15 C 1.54939 * 103.22660 * 159.71896 * 14 13 2
16 16 C 1.54592 * 102.92191 * 322.58766 * 15 14 13
17 17 C 1.47901 * 111.00128 * 69.73022 * 13 2 1
18 18 H 1.08999 * 109.91293 * 333.50971 * 17 13 2
19 19 C 1.52995 * 110.08199 * 94.71473 * 17 13 2
20 20 C 1.53005 * 109.47191 * 294.93522 * 19 17 13
21 21 O 1.42891 * 109.47242 * 185.56015 * 20 19 17
22 22 H 1.08997 * 109.46781 * 189.20200 * 1 2 3
23 23 H 1.08990 * 109.47235 * 309.20524 * 1 2 3
24 24 H 1.09000 * 109.46662 * 69.20340 * 1 2 3
25 25 H 1.09005 * 109.47143 * 305.00430 * 4 2 1
26 26 H 1.08999 * 109.47120 * 64.99998 * 4 2 1
27 27 H 0.97002 * 119.99892 * 179.97438 * 8 7 5
28 28 H 1.09000 * 110.66456 * 41.28307 * 14 13 2
29 29 H 1.08996 * 110.66849 * 278.15368 * 14 13 2
30 30 H 1.09003 * 110.72254 * 204.22647 * 15 14 13
31 31 H 1.09004 * 110.71966 * 80.94678 * 15 14 13
32 32 H 1.09001 * 110.30920 * 263.04220 * 16 15 14
33 33 H 1.08996 * 110.39273 * 140.91690 * 16 15 14
34 34 H 1.09005 * 109.47387 * 54.93056 * 19 17 13
35 35 H 1.09003 * 109.47174 * 174.93545 * 19 17 13
36 36 H 1.08998 * 109.46884 * 305.56185 * 20 19 17
37 37 H 1.09001 * 109.47163 * 65.55749 * 20 19 17
38 38 H 0.96702 * 113.99808 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0854 0.5397
7 6 4.2303 -1.1925 2.3585
8 7 3.5763 -1.8368 3.3002
9 14 6.0919 -1.0601 2.4376
10 1 6.5836 -0.2898 1.2671
11 1 6.4859 -0.3638 3.6886
12 1 6.6862 -2.4209 2.4202
13 7 2.0198 -0.6925 -1.1994
14 6 1.3167 -1.9869 -1.3910
15 6 1.5468 -2.2965 -2.8916
16 6 1.4524 -0.9014 -3.5509
17 6 1.7455 0.0996 -2.4179
18 1 0.8795 0.7415 -2.2563
19 6 2.9652 0.9506 -2.7769
20 6 3.2058 1.9866 -1.6769
21 8 4.2626 2.8636 -2.0716
22 1 -0.3633 -1.0144 0.1643
23 1 -0.3633 0.6495 0.7962
24 1 -0.3633 0.3649 -0.9607
25 1 1.6053 -0.2617 2.1370
26 1 1.7517 -1.7714 1.2057
27 1 4.0606 -2.2435 4.0357
28 1 0.2528 -1.8819 -1.1785
29 1 1.7603 -2.7618 -0.7659
30 1 0.7680 -2.9569 -3.2730
31 1 2.5339 -2.7314 -3.0487
32 1 0.4513 -0.7385 -3.9500
33 1 2.1951 -0.8045 -4.3428
34 1 3.8415 0.3089 -2.8695
35 1 2.7865 1.4606 -3.7235
36 1 2.2954 2.5639 -1.5161
37 1 3.4815 1.4782 -0.7530
38 1 4.4701 3.5475 -1.4201
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695885182.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:49
Heat of formation + Delta-G solvation = -57.439464 kcal
Electronic energy + Delta-G solvation = -17026.632398 eV
Core-core repulsion = 14482.572429 eV
Total energy + Delta-G solvation = -2544.059969 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.33442 -36.40269 -34.28492 -32.17303 -31.72316 -28.44074 -27.36990 -26.72245
-23.44681 -22.58364 -20.98248 -19.84006 -18.75698 -16.87657 -16.16056 -15.92588
-15.00079 -14.57915 -14.38178 -13.82190 -13.44142 -13.25906 -12.94780 -12.41548
-11.92927 -11.73074 -11.53794 -11.41624 -11.18080 -11.05794 -10.89408 -10.66986
-10.54240 -10.39063 -10.30498 -10.10900 -9.86288 -9.59669 -9.12736 -8.86801
-8.25858 -7.54355 -5.88431 -3.86219 3.38406 3.46315 3.52449 4.50723
4.55824 4.58815 5.01708 5.16467 5.27215 5.45110 5.49311 5.66977
5.67895 5.77788 5.82644 5.87382 5.88711 6.02726 6.03405 6.05554
6.17627 6.30389 6.39299 6.45548 6.52536 6.60556 6.67179 6.73781
6.99974 7.51176 7.63831 7.83996 7.95238 8.02249 8.13244 8.58311
9.19873 9.75734 11.23529
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.020722 B = 0.010079 C = 0.008325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1350.922935 B = 2777.380912 C = 3362.362252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.070 3.930
3 H 0.072 0.928
4 C 0.033 3.967
5 C -0.488 4.488
6 H 0.061 0.939
7 C 0.051 3.949
8 N -0.903 5.903
9 Si 0.887 3.113
10 H -0.272 1.272
11 H -0.288 1.288
12 H -0.287 1.287
13 N -0.482 5.482
14 C 0.034 3.966
15 C -0.123 4.123
16 C -0.123 4.123
17 C 0.060 3.940
18 H 0.048 0.952
19 C -0.096 4.096
20 C 0.067 3.933
21 O -0.582 6.582
22 H 0.056 0.944
23 H 0.054 0.946
24 H 0.041 0.959
25 H 0.017 0.983
26 H 0.018 0.982
27 H 0.256 0.744
28 H 0.045 0.955
29 H 0.085 0.915
30 H 0.062 0.938
31 H 0.071 0.929
32 H 0.059 0.941
33 H 0.068 0.932
34 H 0.075 0.925
35 H 0.059 0.941
36 H 0.032 0.968
37 H 0.076 0.924
38 H 0.375 0.625
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.260 3.899 -10.878 12.696
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.038 4.038
3 H 0.090 0.910
4 C -0.004 4.004
5 C -0.527 4.527
6 H 0.079 0.921
7 C -0.149 4.149
8 N -0.544 5.544
9 Si 0.715 3.285
10 H -0.197 1.197
11 H -0.215 1.215
12 H -0.213 1.213
13 N -0.206 5.206
14 C -0.094 4.094
15 C -0.161 4.161
16 C -0.161 4.161
17 C -0.049 4.049
18 H 0.065 0.935
19 C -0.134 4.134
20 C -0.010 4.010
21 O -0.387 6.387
22 H 0.075 0.925
23 H 0.073 0.927
24 H 0.060 0.940
25 H 0.035 0.965
26 H 0.036 0.964
27 H 0.066 0.934
28 H 0.063 0.937
29 H 0.103 0.897
30 H 0.081 0.919
31 H 0.090 0.910
32 H 0.078 0.922
33 H 0.087 0.913
34 H 0.094 0.906
35 H 0.077 0.923
36 H 0.050 0.950
37 H 0.094 0.906
38 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -4.676 3.351 -11.173 12.567
hybrid contribution 0.071 0.490 0.658 0.823
sum -4.605 3.841 -10.515 12.105
Atomic orbital electron populations
1.22539 0.99834 1.01692 1.00305 1.22203 0.90145 0.98778 0.92674
0.90952 1.19131 0.96337 0.95352 0.89582 1.21193 0.91755 1.32929
1.06784 0.92095 1.24995 0.97929 0.95903 0.96028 1.69977 1.35076
1.37013 1.12367 0.86611 0.86563 0.77643 0.77654 1.19688 1.21459
1.21320 1.64908 1.53147 1.02158 1.00338 1.23254 0.97021 0.93729
0.95407 1.22478 1.01752 0.96159 0.95756 1.22392 1.00897 0.95195
0.97645 1.22357 0.95852 0.94963 0.91722 0.93456 1.21445 0.98791
0.96145 0.97039 1.22520 0.88352 0.90852 0.99306 1.86394 1.56586
1.47147 1.48619 0.92468 0.92718 0.94021 0.96520 0.96407 0.93413
0.93707 0.89691 0.91933 0.90979 0.92199 0.91334 0.90645 0.92259
0.94975 0.90556 0.77889
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.14 8.08 37.16 0.30 -2.84 16
2 C 0.07 1.40 1.76 -67.71 -0.12 1.28 16
3 H 0.07 1.44 5.25 -51.93 -0.27 1.17 16
4 C 0.03 0.83 4.46 -27.88 -0.12 0.71 16
5 C -0.49 -13.50 8.84 -34.44 -0.30 -13.80 16
6 H 0.06 1.68 6.67 -52.49 -0.35 1.33 16
7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16
8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16
9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16
10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
13 N -0.48 -9.00 4.42 -214.67 -0.95 -9.95 16
14 C 0.03 0.58 5.59 -1.89 -0.01 0.56 16
15 C -0.12 -1.73 7.06 -24.87 -0.18 -1.91 16
16 C -0.12 -1.64 6.57 -25.38 -0.17 -1.81 16
17 C 0.06 0.94 2.37 -66.64 -0.16 0.78 16
18 H 0.05 0.72 6.12 -51.93 -0.32 0.41 16
19 C -0.10 -1.53 5.05 -26.73 -0.14 -1.67 16
20 C 0.07 1.11 5.66 37.16 0.21 1.32 16
21 O -0.58 -9.34 13.66 -35.23 -0.48 -9.82 16
22 H 0.06 0.97 6.50 -51.93 -0.34 0.64 16
23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
24 H 0.04 0.63 6.35 -51.93 -0.33 0.30 16
25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
26 H 0.02 0.48 7.16 -51.93 -0.37 0.10 16
27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
28 H 0.04 0.73 5.47 -51.93 -0.28 0.45 16
29 H 0.08 1.64 7.68 -51.93 -0.40 1.24 16
30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
33 H 0.07 0.85 7.69 -51.93 -0.40 0.46 16
34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
36 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16
37 H 0.08 1.48 5.37 -51.93 -0.28 1.20 16
38 H 0.38 4.39 9.12 45.56 0.42 4.80 16
LS Contribution 289.79 15.07 4.37 4.37
Total: -1.00 -30.76 289.79 -7.56 -38.32
By element:
Atomic # 1 Polarization: 7.86 SS G_CDS: -5.43 Total: 2.43 kcal
Atomic # 6 Polarization: -15.24 SS G_CDS: -0.78 Total: -16.02 kcal
Atomic # 7 Polarization: -36.18 SS G_CDS: -0.21 Total: -36.39 kcal
Atomic # 8 Polarization: -9.34 SS G_CDS: -0.48 Total: -9.82 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -30.76 -7.56 -38.32 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885182.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.117 kcal
(2) G-P(sol) polarization free energy of solvation -30.760 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds