Wall clock time and date at job start Mon Mar 30 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47390 * 2 1 4 4 C 1.53003 * 109.47197 * 119.99674 * 2 1 3 5 5 C 1.50700 * 109.47510 * 185.00093 * 4 2 1 6 6 H 1.07998 * 119.99321 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00261 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00052 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47213 * 120.00380 * 9 7 5 12 12 H 1.48501 * 109.47121 * 240.00275 * 9 7 5 13 13 N 1.46897 * 109.47530 * 239.99832 * 2 1 3 14 14 C 1.48538 * 110.99793 * 312.33464 * 13 2 1 15 15 C 1.54939 * 103.22660 * 159.71896 * 14 13 2 16 16 C 1.54592 * 102.92191 * 322.58766 * 15 14 13 17 17 C 1.47901 * 111.00128 * 69.73022 * 13 2 1 18 18 H 1.08999 * 109.91293 * 333.50971 * 17 13 2 19 19 C 1.52995 * 110.08199 * 94.71473 * 17 13 2 20 20 C 1.53005 * 109.47191 * 294.93522 * 19 17 13 21 21 O 1.42891 * 109.47242 * 185.56015 * 20 19 17 22 22 H 1.08997 * 109.46781 * 189.20200 * 1 2 3 23 23 H 1.08990 * 109.47235 * 309.20524 * 1 2 3 24 24 H 1.09000 * 109.46662 * 69.20340 * 1 2 3 25 25 H 1.09005 * 109.47143 * 305.00430 * 4 2 1 26 26 H 1.08999 * 109.47120 * 64.99998 * 4 2 1 27 27 H 0.97002 * 119.99892 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.66456 * 41.28307 * 14 13 2 29 29 H 1.08996 * 110.66849 * 278.15368 * 14 13 2 30 30 H 1.09003 * 110.72254 * 204.22647 * 15 14 13 31 31 H 1.09004 * 110.71966 * 80.94678 * 15 14 13 32 32 H 1.09001 * 110.30920 * 263.04220 * 16 15 14 33 33 H 1.08996 * 110.39273 * 140.91690 * 16 15 14 34 34 H 1.09005 * 109.47387 * 54.93056 * 19 17 13 35 35 H 1.09003 * 109.47174 * 174.93545 * 19 17 13 36 36 H 1.08998 * 109.46884 * 305.56185 * 20 19 17 37 37 H 1.09001 * 109.47163 * 65.55749 * 20 19 17 38 38 H 0.96702 * 113.99808 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8368 3.3002 9 14 6.0919 -1.0601 2.4376 10 1 6.5836 -0.2898 1.2671 11 1 6.4859 -0.3638 3.6886 12 1 6.6862 -2.4209 2.4202 13 7 2.0198 -0.6925 -1.1994 14 6 1.3167 -1.9869 -1.3910 15 6 1.5468 -2.2965 -2.8916 16 6 1.4524 -0.9014 -3.5509 17 6 1.7455 0.0996 -2.4179 18 1 0.8795 0.7415 -2.2563 19 6 2.9652 0.9506 -2.7769 20 6 3.2058 1.9866 -1.6769 21 8 4.2626 2.8636 -2.0716 22 1 -0.3633 -1.0144 0.1643 23 1 -0.3633 0.6495 0.7962 24 1 -0.3633 0.3649 -0.9607 25 1 1.6053 -0.2617 2.1370 26 1 1.7517 -1.7714 1.2057 27 1 4.0606 -2.2435 4.0357 28 1 0.2528 -1.8819 -1.1785 29 1 1.7603 -2.7618 -0.7659 30 1 0.7680 -2.9569 -3.2730 31 1 2.5339 -2.7314 -3.0487 32 1 0.4513 -0.7385 -3.9500 33 1 2.1951 -0.8045 -4.3428 34 1 3.8415 0.3089 -2.8695 35 1 2.7865 1.4606 -3.7235 36 1 2.2954 2.5639 -1.5161 37 1 3.4815 1.4782 -0.7530 38 1 4.4701 3.5475 -1.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:49 Heat of formation + Delta-G solvation = -57.439464 kcal Electronic energy + Delta-G solvation = -17026.632398 eV Core-core repulsion = 14482.572429 eV Total energy + Delta-G solvation = -2544.059969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.33442 -36.40269 -34.28492 -32.17303 -31.72316 -28.44074 -27.36990 -26.72245 -23.44681 -22.58364 -20.98248 -19.84006 -18.75698 -16.87657 -16.16056 -15.92588 -15.00079 -14.57915 -14.38178 -13.82190 -13.44142 -13.25906 -12.94780 -12.41548 -11.92927 -11.73074 -11.53794 -11.41624 -11.18080 -11.05794 -10.89408 -10.66986 -10.54240 -10.39063 -10.30498 -10.10900 -9.86288 -9.59669 -9.12736 -8.86801 -8.25858 -7.54355 -5.88431 -3.86219 3.38406 3.46315 3.52449 4.50723 4.55824 4.58815 5.01708 5.16467 5.27215 5.45110 5.49311 5.66977 5.67895 5.77788 5.82644 5.87382 5.88711 6.02726 6.03405 6.05554 6.17627 6.30389 6.39299 6.45548 6.52536 6.60556 6.67179 6.73781 6.99974 7.51176 7.63831 7.83996 7.95238 8.02249 8.13244 8.58311 9.19873 9.75734 11.23529 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.010079 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.922935 B = 2777.380912 C = 3362.362252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.070 3.930 3 H 0.072 0.928 4 C 0.033 3.967 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.887 3.113 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.482 5.482 14 C 0.034 3.966 15 C -0.123 4.123 16 C -0.123 4.123 17 C 0.060 3.940 18 H 0.048 0.952 19 C -0.096 4.096 20 C 0.067 3.933 21 O -0.582 6.582 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.256 0.744 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 3.899 -10.878 12.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.038 4.038 3 H 0.090 0.910 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.544 5.544 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.206 5.206 14 C -0.094 4.094 15 C -0.161 4.161 16 C -0.161 4.161 17 C -0.049 4.049 18 H 0.065 0.935 19 C -0.134 4.134 20 C -0.010 4.010 21 O -0.387 6.387 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.035 0.965 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.676 3.351 -11.173 12.567 hybrid contribution 0.071 0.490 0.658 0.823 sum -4.605 3.841 -10.515 12.105 Atomic orbital electron populations 1.22539 0.99834 1.01692 1.00305 1.22203 0.90145 0.98778 0.92674 0.90952 1.19131 0.96337 0.95352 0.89582 1.21193 0.91755 1.32929 1.06784 0.92095 1.24995 0.97929 0.95903 0.96028 1.69977 1.35076 1.37013 1.12367 0.86611 0.86563 0.77643 0.77654 1.19688 1.21459 1.21320 1.64908 1.53147 1.02158 1.00338 1.23254 0.97021 0.93729 0.95407 1.22478 1.01752 0.96159 0.95756 1.22392 1.00897 0.95195 0.97645 1.22357 0.95852 0.94963 0.91722 0.93456 1.21445 0.98791 0.96145 0.97039 1.22520 0.88352 0.90852 0.99306 1.86394 1.56586 1.47147 1.48619 0.92468 0.92718 0.94021 0.96520 0.96407 0.93413 0.93707 0.89691 0.91933 0.90979 0.92199 0.91334 0.90645 0.92259 0.94975 0.90556 0.77889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.14 8.08 37.16 0.30 -2.84 16 2 C 0.07 1.40 1.76 -67.71 -0.12 1.28 16 3 H 0.07 1.44 5.25 -51.93 -0.27 1.17 16 4 C 0.03 0.83 4.46 -27.88 -0.12 0.71 16 5 C -0.49 -13.50 8.84 -34.44 -0.30 -13.80 16 6 H 0.06 1.68 6.67 -52.49 -0.35 1.33 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.48 -9.00 4.42 -214.67 -0.95 -9.95 16 14 C 0.03 0.58 5.59 -1.89 -0.01 0.56 16 15 C -0.12 -1.73 7.06 -24.87 -0.18 -1.91 16 16 C -0.12 -1.64 6.57 -25.38 -0.17 -1.81 16 17 C 0.06 0.94 2.37 -66.64 -0.16 0.78 16 18 H 0.05 0.72 6.12 -51.93 -0.32 0.41 16 19 C -0.10 -1.53 5.05 -26.73 -0.14 -1.67 16 20 C 0.07 1.11 5.66 37.16 0.21 1.32 16 21 O -0.58 -9.34 13.66 -35.23 -0.48 -9.82 16 22 H 0.06 0.97 6.50 -51.93 -0.34 0.64 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.04 0.63 6.35 -51.93 -0.33 0.30 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.48 7.16 -51.93 -0.37 0.10 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.04 0.73 5.47 -51.93 -0.28 0.45 16 29 H 0.08 1.64 7.68 -51.93 -0.40 1.24 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.85 7.69 -51.93 -0.40 0.46 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.03 0.49 8.00 -51.93 -0.42 0.07 16 37 H 0.08 1.48 5.37 -51.93 -0.28 1.20 16 38 H 0.38 4.39 9.12 45.56 0.42 4.80 16 LS Contribution 289.79 15.07 4.37 4.37 Total: -1.00 -30.76 289.79 -7.56 -38.32 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.43 Total: 2.43 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.78 Total: -16.02 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.21 Total: -36.39 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.48 Total: -9.82 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.76 -7.56 -38.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.117 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds