Wall clock time and date at job start Mon Mar 30 2020 04:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47390 * 2 1 4 4 C 1.53003 * 109.47197 * 119.99674 * 2 1 3 5 5 C 1.50700 * 109.47510 * 185.00093 * 4 2 1 6 6 H 1.07998 * 119.99321 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00261 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99848 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00052 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47213 * 120.00380 * 9 7 5 12 12 H 1.48501 * 109.47121 * 240.00275 * 9 7 5 13 13 N 1.46897 * 109.47530 * 239.99832 * 2 1 3 14 14 C 1.48538 * 110.99793 * 312.33464 * 13 2 1 15 15 C 1.54939 * 103.22660 * 159.71896 * 14 13 2 16 16 C 1.54592 * 102.92191 * 322.58766 * 15 14 13 17 17 C 1.47901 * 111.00128 * 69.73022 * 13 2 1 18 18 H 1.08999 * 109.91293 * 333.50971 * 17 13 2 19 19 C 1.52995 * 110.08199 * 94.71473 * 17 13 2 20 20 C 1.53005 * 109.47191 * 294.93522 * 19 17 13 21 21 O 1.42891 * 109.47242 * 185.56015 * 20 19 17 22 22 H 1.08997 * 109.46781 * 189.20200 * 1 2 3 23 23 H 1.08990 * 109.47235 * 309.20524 * 1 2 3 24 24 H 1.09000 * 109.46662 * 69.20340 * 1 2 3 25 25 H 1.09005 * 109.47143 * 305.00430 * 4 2 1 26 26 H 1.08999 * 109.47120 * 64.99998 * 4 2 1 27 27 H 0.97002 * 119.99892 * 179.97438 * 8 7 5 28 28 H 1.09000 * 110.66456 * 41.28307 * 14 13 2 29 29 H 1.08996 * 110.66849 * 278.15368 * 14 13 2 30 30 H 1.09003 * 110.72254 * 204.22647 * 15 14 13 31 31 H 1.09004 * 110.71966 * 80.94678 * 15 14 13 32 32 H 1.09001 * 110.30920 * 263.04220 * 16 15 14 33 33 H 1.08996 * 110.39273 * 140.91690 * 16 15 14 34 34 H 1.09005 * 109.47387 * 54.93056 * 19 17 13 35 35 H 1.09003 * 109.47174 * 174.93545 * 19 17 13 36 36 H 1.08998 * 109.46884 * 305.56185 * 20 19 17 37 37 H 1.09001 * 109.47163 * 65.55749 * 20 19 17 38 38 H 0.96702 * 113.99808 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0854 0.5397 7 6 4.2303 -1.1925 2.3585 8 7 3.5763 -1.8368 3.3002 9 14 6.0919 -1.0601 2.4376 10 1 6.5836 -0.2898 1.2671 11 1 6.4859 -0.3638 3.6886 12 1 6.6862 -2.4209 2.4202 13 7 2.0198 -0.6925 -1.1994 14 6 1.3167 -1.9869 -1.3910 15 6 1.5468 -2.2965 -2.8916 16 6 1.4524 -0.9014 -3.5509 17 6 1.7455 0.0996 -2.4179 18 1 0.8795 0.7415 -2.2563 19 6 2.9652 0.9506 -2.7769 20 6 3.2058 1.9866 -1.6769 21 8 4.2626 2.8636 -2.0716 22 1 -0.3633 -1.0144 0.1643 23 1 -0.3633 0.6495 0.7962 24 1 -0.3633 0.3649 -0.9607 25 1 1.6053 -0.2617 2.1370 26 1 1.7517 -1.7714 1.2057 27 1 4.0606 -2.2435 4.0357 28 1 0.2528 -1.8819 -1.1785 29 1 1.7603 -2.7618 -0.7659 30 1 0.7680 -2.9569 -3.2730 31 1 2.5339 -2.7314 -3.0487 32 1 0.4513 -0.7385 -3.9500 33 1 2.1951 -0.8045 -4.3428 34 1 3.8415 0.3089 -2.8695 35 1 2.7865 1.4606 -3.7235 36 1 2.2954 2.5639 -1.5161 37 1 3.4815 1.4782 -0.7530 38 1 4.4701 3.5475 -1.4201 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:49 Heat of formation + Delta-G solvation = -79.799709 kcal Electronic energy + Delta-G solvation = -17027.602011 eV Core-core repulsion = 14482.572429 eV Total energy + Delta-G solvation = -2545.029582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68083 -37.66813 -35.94918 -34.14235 -32.97252 -30.04073 -29.05766 -27.99589 -25.26635 -24.13386 -22.25762 -21.13736 -20.24294 -18.41803 -18.04577 -17.31194 -16.48462 -16.22720 -15.89965 -15.20349 -14.71114 -14.69886 -14.34514 -14.16064 -13.54303 -13.52341 -12.94113 -12.78968 -12.71182 -12.58679 -12.37021 -12.33957 -12.18682 -11.88456 -11.66738 -11.55125 -11.27008 -11.10451 -11.00160 -10.61933 -10.47914 -8.94726 -8.10227 -6.14110 1.38460 1.40534 1.53158 2.46241 3.17197 3.29222 3.35940 3.82337 3.97001 4.12655 4.22103 4.27177 4.38049 4.47122 4.50967 4.55921 4.64511 4.70646 4.77459 4.92561 4.98185 5.07209 5.14524 5.17709 5.20338 5.23892 5.27257 5.39749 5.49034 5.51436 5.72203 5.90881 6.31342 6.37652 6.56595 6.88527 7.00410 7.51628 9.02073 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.020722 B = 0.010079 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.922935 B = 2777.380912 C = 3362.362252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 H 0.072 0.928 4 C 0.040 3.960 5 C -0.492 4.492 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.285 1.285 13 N -0.508 5.508 14 C 0.030 3.970 15 C -0.116 4.116 16 C -0.116 4.116 17 C 0.061 3.939 18 H 0.059 0.941 19 C -0.094 4.094 20 C 0.071 3.929 21 O -0.594 6.594 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.069 0.931 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.257 0.743 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 4.805 -12.968 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.029 4.029 3 H 0.090 0.910 4 C 0.003 3.997 5 C -0.530 4.530 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.211 1.211 13 N -0.232 5.232 14 C -0.097 4.097 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.047 4.047 18 H 0.077 0.923 19 C -0.132 4.132 20 C -0.006 4.006 21 O -0.401 6.401 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.067 4.275 -13.269 14.833 hybrid contribution 0.205 0.228 1.322 1.357 sum -4.862 4.502 -11.947 13.662 Atomic orbital electron populations 1.22416 0.97325 1.01729 1.01986 1.21881 0.92084 0.97804 0.91139 0.91021 1.18976 0.95167 0.94096 0.91490 1.21500 0.93215 1.32029 1.06291 0.92381 1.25809 1.02504 0.95842 0.95902 1.70100 1.36833 1.38205 1.13104 0.85596 0.81160 0.77608 0.77862 1.19147 1.20708 1.21111 1.64745 1.54213 1.03150 1.01113 1.23232 0.97055 0.92259 0.97195 1.22442 1.02182 0.97419 0.93343 1.22397 1.02804 0.93360 0.96812 1.22427 0.96002 0.95298 0.91017 0.92289 1.21453 0.98130 0.95783 0.97803 1.22398 0.89036 0.91144 0.98028 1.86356 1.56563 1.47661 1.49558 0.92938 0.92355 0.91267 0.99186 0.99120 0.93373 0.92648 0.93289 0.89251 0.91986 0.89563 0.90217 0.92812 0.90058 0.93262 0.94086 0.75902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 8.08 71.98 0.58 -5.14 16 2 C 0.08 3.16 1.76 44.92 0.08 3.24 16 3 H 0.07 2.85 5.25 -2.39 -0.01 2.83 16 4 C 0.04 2.08 4.46 29.85 0.13 2.21 16 5 C -0.49 -27.95 8.84 25.60 0.23 -27.72 16 6 H 0.06 3.28 6.67 -2.91 -0.02 3.26 16 7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 8 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16 9 Si 0.95 46.18 29.54 68.60 2.03 48.21 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 13 N -0.51 -18.71 4.42 -833.10 -3.68 -22.39 16 14 C 0.03 1.02 5.59 86.65 0.48 1.51 16 15 C -0.12 -2.99 7.06 31.80 0.22 -2.77 16 16 C -0.12 -2.66 6.57 31.47 0.21 -2.45 16 17 C 0.06 1.75 2.37 45.06 0.11 1.85 16 18 H 0.06 1.57 6.12 -2.39 -0.01 1.56 16 19 C -0.09 -2.79 5.05 30.59 0.15 -2.64 16 20 C 0.07 2.26 5.66 71.98 0.41 2.67 16 21 O -0.59 -18.05 13.66 -148.98 -2.03 -20.08 16 22 H 0.05 1.74 6.50 -2.39 -0.02 1.73 16 23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.07 1.87 6.35 -2.39 -0.02 1.86 16 25 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 26 H -0.01 -0.54 7.16 -2.39 -0.02 -0.56 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 28 H 0.06 1.73 5.47 -2.39 -0.01 1.72 16 29 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.08 1.68 7.69 -2.39 -0.02 1.67 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 37 H 0.04 1.59 5.37 -2.39 -0.01 1.58 16 38 H 0.39 8.56 9.12 -74.06 -0.68 7.89 16 Total: -1.00 -67.26 289.79 0.03 -67.24 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.36 Total: 13.90 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.07 Total: -29.05 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -3.39 Total: -80.22 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -2.03 Total: -20.08 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -67.26 0.03 -67.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.561 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds