Wall clock time and date at job start Mon Mar 30 2020 04:13:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08995 * 109.47390 * 2 1
4 4 C 1.53003 * 109.47197 * 119.99674 * 2 1 3
5 5 C 1.50700 * 109.47510 * 185.00093 * 4 2 1
6 6 H 1.07998 * 119.99321 * 0.02562 * 5 4 2
7 7 C 1.37871 * 120.00261 * 179.97438 * 5 4 2
8 8 N 1.31519 * 119.99848 * 0.02562 * 7 5 4
9 9 Si 1.86796 * 120.00052 * 180.02562 * 7 5 4
10 10 H 1.48493 * 109.47274 * 0.02562 * 9 7 5
11 11 H 1.48499 * 109.47213 * 120.00380 * 9 7 5
12 12 H 1.48501 * 109.47121 * 240.00275 * 9 7 5
13 13 N 1.46897 * 109.47530 * 239.99832 * 2 1 3
14 14 C 1.48538 * 110.99793 * 312.33464 * 13 2 1
15 15 C 1.54939 * 103.22660 * 159.71896 * 14 13 2
16 16 C 1.54592 * 102.92191 * 322.58766 * 15 14 13
17 17 C 1.47901 * 111.00128 * 69.73022 * 13 2 1
18 18 H 1.08999 * 109.91293 * 333.50971 * 17 13 2
19 19 C 1.52995 * 110.08199 * 94.71473 * 17 13 2
20 20 C 1.53005 * 109.47191 * 294.93522 * 19 17 13
21 21 O 1.42891 * 109.47242 * 185.56015 * 20 19 17
22 22 H 1.08997 * 109.46781 * 189.20200 * 1 2 3
23 23 H 1.08990 * 109.47235 * 309.20524 * 1 2 3
24 24 H 1.09000 * 109.46662 * 69.20340 * 1 2 3
25 25 H 1.09005 * 109.47143 * 305.00430 * 4 2 1
26 26 H 1.08999 * 109.47120 * 64.99998 * 4 2 1
27 27 H 0.97002 * 119.99892 * 179.97438 * 8 7 5
28 28 H 1.09000 * 110.66456 * 41.28307 * 14 13 2
29 29 H 1.08996 * 110.66849 * 278.15368 * 14 13 2
30 30 H 1.09003 * 110.72254 * 204.22647 * 15 14 13
31 31 H 1.09004 * 110.71966 * 80.94678 * 15 14 13
32 32 H 1.09001 * 110.30920 * 263.04220 * 16 15 14
33 33 H 1.08996 * 110.39273 * 140.91690 * 16 15 14
34 34 H 1.09005 * 109.47387 * 54.93056 * 19 17 13
35 35 H 1.09003 * 109.47174 * 174.93545 * 19 17 13
36 36 H 1.08998 * 109.46884 * 305.56185 * 20 19 17
37 37 H 1.09001 * 109.47163 * 65.55749 * 20 19 17
38 38 H 0.96702 * 113.99808 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 3.5419 -0.6149 1.3128
6 1 4.0789 -0.0854 0.5397
7 6 4.2303 -1.1925 2.3585
8 7 3.5763 -1.8368 3.3002
9 14 6.0919 -1.0601 2.4376
10 1 6.5836 -0.2898 1.2671
11 1 6.4859 -0.3638 3.6886
12 1 6.6862 -2.4209 2.4202
13 7 2.0198 -0.6925 -1.1994
14 6 1.3167 -1.9869 -1.3910
15 6 1.5468 -2.2965 -2.8916
16 6 1.4524 -0.9014 -3.5509
17 6 1.7455 0.0996 -2.4179
18 1 0.8795 0.7415 -2.2563
19 6 2.9652 0.9506 -2.7769
20 6 3.2058 1.9866 -1.6769
21 8 4.2626 2.8636 -2.0716
22 1 -0.3633 -1.0144 0.1643
23 1 -0.3633 0.6495 0.7962
24 1 -0.3633 0.3649 -0.9607
25 1 1.6053 -0.2617 2.1370
26 1 1.7517 -1.7714 1.2057
27 1 4.0606 -2.2435 4.0357
28 1 0.2528 -1.8819 -1.1785
29 1 1.7603 -2.7618 -0.7659
30 1 0.7680 -2.9569 -3.2730
31 1 2.5339 -2.7314 -3.0487
32 1 0.4513 -0.7385 -3.9500
33 1 2.1951 -0.8045 -4.3428
34 1 3.8415 0.3089 -2.8695
35 1 2.7865 1.4606 -3.7235
36 1 2.2954 2.5639 -1.5161
37 1 3.4815 1.4782 -0.7530
38 1 4.4701 3.5475 -1.4201
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695885182.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:13:49
Heat of formation + Delta-G solvation = -79.799709 kcal
Electronic energy + Delta-G solvation = -17027.602011 eV
Core-core repulsion = 14482.572429 eV
Total energy + Delta-G solvation = -2545.029582 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.68083 -37.66813 -35.94918 -34.14235 -32.97252 -30.04073 -29.05766 -27.99589
-25.26635 -24.13386 -22.25762 -21.13736 -20.24294 -18.41803 -18.04577 -17.31194
-16.48462 -16.22720 -15.89965 -15.20349 -14.71114 -14.69886 -14.34514 -14.16064
-13.54303 -13.52341 -12.94113 -12.78968 -12.71182 -12.58679 -12.37021 -12.33957
-12.18682 -11.88456 -11.66738 -11.55125 -11.27008 -11.10451 -11.00160 -10.61933
-10.47914 -8.94726 -8.10227 -6.14110 1.38460 1.40534 1.53158 2.46241
3.17197 3.29222 3.35940 3.82337 3.97001 4.12655 4.22103 4.27177
4.38049 4.47122 4.50967 4.55921 4.64511 4.70646 4.77459 4.92561
4.98185 5.07209 5.14524 5.17709 5.20338 5.23892 5.27257 5.39749
5.49034 5.51436 5.72203 5.90881 6.31342 6.37652 6.56595 6.88527
7.00410 7.51628 9.02073
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.020722 B = 0.010079 C = 0.008325
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1350.922935 B = 2777.380912 C = 3362.362252
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.079 3.921
3 H 0.072 0.928
4 C 0.040 3.960
5 C -0.492 4.492
6 H 0.058 0.942
7 C -0.005 4.005
8 N -0.940 5.940
9 Si 0.951 3.049
10 H -0.267 1.267
11 H -0.281 1.281
12 H -0.285 1.285
13 N -0.508 5.508
14 C 0.030 3.970
15 C -0.116 4.116
16 C -0.116 4.116
17 C 0.061 3.939
18 H 0.059 0.941
19 C -0.094 4.094
20 C 0.071 3.929
21 O -0.594 6.594
22 H 0.052 0.948
23 H 0.057 0.943
24 H 0.069 0.931
25 H -0.010 1.010
26 H -0.010 1.010
27 H 0.257 0.743
28 H 0.055 0.945
29 H 0.049 0.951
30 H 0.089 0.911
31 H 0.061 0.939
32 H 0.086 0.914
33 H 0.079 0.921
34 H 0.053 0.947
35 H 0.081 0.919
36 H 0.049 0.951
37 H 0.041 0.959
38 H 0.392 0.608
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.655 4.805 -12.968 14.941
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.029 4.029
3 H 0.090 0.910
4 C 0.003 3.997
5 C -0.530 4.530
6 H 0.076 0.924
7 C -0.201 4.201
8 N -0.582 5.582
9 Si 0.778 3.222
10 H -0.191 1.191
11 H -0.207 1.207
12 H -0.211 1.211
13 N -0.232 5.232
14 C -0.097 4.097
15 C -0.154 4.154
16 C -0.154 4.154
17 C -0.047 4.047
18 H 0.077 0.923
19 C -0.132 4.132
20 C -0.006 4.006
21 O -0.401 6.401
22 H 0.071 0.929
23 H 0.076 0.924
24 H 0.087 0.913
25 H 0.008 0.992
26 H 0.009 0.991
27 H 0.066 0.934
28 H 0.074 0.926
29 H 0.067 0.933
30 H 0.107 0.893
31 H 0.080 0.920
32 H 0.104 0.896
33 H 0.098 0.902
34 H 0.072 0.928
35 H 0.099 0.901
36 H 0.067 0.933
37 H 0.059 0.941
38 H 0.241 0.759
Dipole moment (debyes) X Y Z Total
from point charges -5.067 4.275 -13.269 14.833
hybrid contribution 0.205 0.228 1.322 1.357
sum -4.862 4.502 -11.947 13.662
Atomic orbital electron populations
1.22416 0.97325 1.01729 1.01986 1.21881 0.92084 0.97804 0.91139
0.91021 1.18976 0.95167 0.94096 0.91490 1.21500 0.93215 1.32029
1.06291 0.92381 1.25809 1.02504 0.95842 0.95902 1.70100 1.36833
1.38205 1.13104 0.85596 0.81160 0.77608 0.77862 1.19147 1.20708
1.21111 1.64745 1.54213 1.03150 1.01113 1.23232 0.97055 0.92259
0.97195 1.22442 1.02182 0.97419 0.93343 1.22397 1.02804 0.93360
0.96812 1.22427 0.96002 0.95298 0.91017 0.92289 1.21453 0.98130
0.95783 0.97803 1.22398 0.89036 0.91144 0.98028 1.86356 1.56563
1.47661 1.49558 0.92938 0.92355 0.91267 0.99186 0.99120 0.93373
0.92648 0.93289 0.89251 0.91986 0.89563 0.90217 0.92812 0.90058
0.93262 0.94086 0.75902
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.72 8.08 71.98 0.58 -5.14 16
2 C 0.08 3.16 1.76 44.92 0.08 3.24 16
3 H 0.07 2.85 5.25 -2.39 -0.01 2.83 16
4 C 0.04 2.08 4.46 29.85 0.13 2.21 16
5 C -0.49 -27.95 8.84 25.60 0.23 -27.72 16
6 H 0.06 3.28 6.67 -2.91 -0.02 3.26 16
7 C 0.00 -0.28 5.46 84.65 0.46 0.18 16
8 N -0.94 -58.12 13.29 21.45 0.28 -57.83 16
9 Si 0.95 46.18 29.54 68.60 2.03 48.21 16
10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16
11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16
12 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16
13 N -0.51 -18.71 4.42 -833.10 -3.68 -22.39 16
14 C 0.03 1.02 5.59 86.65 0.48 1.51 16
15 C -0.12 -2.99 7.06 31.80 0.22 -2.77 16
16 C -0.12 -2.66 6.57 31.47 0.21 -2.45 16
17 C 0.06 1.75 2.37 45.06 0.11 1.85 16
18 H 0.06 1.57 6.12 -2.39 -0.01 1.56 16
19 C -0.09 -2.79 5.05 30.59 0.15 -2.64 16
20 C 0.07 2.26 5.66 71.98 0.41 2.67 16
21 O -0.59 -18.05 13.66 -148.98 -2.03 -20.08 16
22 H 0.05 1.74 6.50 -2.39 -0.02 1.73 16
23 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
24 H 0.07 1.87 6.35 -2.39 -0.02 1.86 16
25 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16
26 H -0.01 -0.54 7.16 -2.39 -0.02 -0.56 16
27 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16
28 H 0.06 1.73 5.47 -2.39 -0.01 1.72 16
29 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16
30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
31 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16
32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
33 H 0.08 1.68 7.69 -2.39 -0.02 1.67 16
34 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16
35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
36 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16
37 H 0.04 1.59 5.37 -2.39 -0.01 1.58 16
38 H 0.39 8.56 9.12 -74.06 -0.68 7.89 16
Total: -1.00 -67.26 289.79 0.03 -67.24
By element:
Atomic # 1 Polarization: 13.54 SS G_CDS: 0.36 Total: 13.90 kcal
Atomic # 6 Polarization: -32.11 SS G_CDS: 3.07 Total: -29.05 kcal
Atomic # 7 Polarization: -76.82 SS G_CDS: -3.39 Total: -80.22 kcal
Atomic # 8 Polarization: -18.05 SS G_CDS: -2.03 Total: -20.08 kcal
Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal
Total: -67.26 0.03 -67.24 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885182.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.561 kcal
(2) G-P(sol) polarization free energy of solvation -67.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.825 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds