Wall clock time and date at job start Mon Mar 30 2020 04:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46966 * 239.99829 * 2 1 3 5 5 C 1.50706 * 109.46910 * 175.00073 * 4 2 1 6 6 H 1.07995 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47272 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47408 * 119.99863 * 9 7 5 12 12 H 1.48498 * 109.47120 * 239.99990 * 9 7 5 13 13 N 1.46905 * 109.46689 * 120.00128 * 2 1 3 14 14 C 1.47843 * 111.00101 * 38.65866 * 13 2 1 15 15 C 1.54908 * 104.79242 * 213.63513 * 14 13 2 16 16 C 1.55139 * 101.65331 * 37.06908 * 15 14 13 17 17 H 1.09000 * 110.85672 * 82.80190 * 16 15 14 18 18 O 1.42904 * 110.70410 * 205.96230 * 16 15 14 19 19 C 1.47440 * 111.00075 * 277.81082 * 13 2 1 20 20 C 1.52998 * 109.89229 * 242.67003 * 19 13 2 21 21 C 1.53007 * 109.88717 * 3.85673 * 19 13 2 22 22 H 1.08998 * 109.47229 * 161.52806 * 1 2 3 23 23 H 1.09004 * 109.46737 * 41.52900 * 1 2 3 24 24 H 1.08994 * 109.47113 * 281.53059 * 1 2 3 25 25 H 1.09003 * 109.47275 * 295.00219 * 4 2 1 26 26 H 1.09001 * 109.47019 * 55.00664 * 4 2 1 27 27 H 0.96997 * 120.00620 * 179.97438 * 8 7 5 28 28 H 1.08993 * 110.37501 * 332.46346 * 14 13 2 29 29 H 1.08994 * 110.37284 * 94.80734 * 14 13 2 30 30 H 1.09001 * 110.99156 * 278.97848 * 15 14 13 31 31 H 1.09005 * 111.01970 * 155.17698 * 15 14 13 32 32 H 0.96699 * 114.00200 * 293.60122 * 18 16 15 33 33 H 1.08997 * 109.47397 * 59.99414 * 20 19 13 34 34 H 1.08999 * 109.47436 * 180.02562 * 20 19 13 35 35 H 1.09004 * 109.46704 * 299.99958 * 20 19 13 36 36 H 1.08994 * 109.47215 * 60.81230 * 21 19 13 37 37 H 1.08996 * 109.47003 * 180.81606 * 21 19 13 38 38 H 1.09001 * 109.47032 * 300.81508 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0791 -0.0862 -0.5392 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0921 -1.0615 -2.4366 10 1 6.5840 -0.2931 -1.2649 11 1 6.6855 -2.4228 -2.4196 12 1 6.4871 -0.3650 -3.6872 13 7 2.0196 -0.6926 1.1995 14 6 1.1800 -1.8686 1.5121 15 6 1.1838 -1.9575 3.0586 16 6 1.1567 -0.4588 3.4586 17 1 0.1387 -0.0697 3.4368 18 8 1.7403 -0.2698 4.7493 19 6 2.0194 0.2081 2.3668 20 6 3.4490 0.3991 2.8773 21 6 1.4163 1.5603 1.9807 22 1 -0.3633 -0.9747 -0.3256 23 1 -0.3633 0.7694 -0.6814 24 1 -0.3633 0.2054 1.0069 25 1 1.7516 -1.7716 -1.2056 26 1 1.6055 -0.2617 -2.1370 27 1 4.0607 -2.2432 -4.0358 28 1 0.1654 -1.7194 1.1430 29 1 1.6135 -2.7701 1.0791 30 1 2.0912 -2.4416 3.4197 31 1 0.2962 -2.4750 3.4226 32 1 1.2366 -0.6701 5.4712 33 1 4.0617 0.8340 2.0877 34 1 3.4408 1.0653 3.7400 35 1 3.8628 -0.5664 3.1682 36 1 0.3872 1.4183 1.6509 37 1 1.4327 2.2253 2.8442 38 1 1.9995 2.0006 1.1719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:10 Heat of formation + Delta-G solvation = -32.729192 kcal Electronic energy + Delta-G solvation = -17292.399478 eV Core-core repulsion = 14749.411027 eV Total energy + Delta-G solvation = -2542.988451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.06725 -36.36538 -33.49788 -32.11469 -31.87436 -28.04799 -27.73083 -26.37043 -24.51774 -23.13314 -21.68061 -19.63252 -17.76937 -17.23264 -16.14990 -15.61122 -14.92400 -14.66902 -14.17212 -14.00686 -13.43746 -12.72265 -12.59001 -12.17006 -11.98864 -11.78025 -11.67288 -11.58990 -11.37371 -11.18319 -10.89172 -10.76935 -10.52879 -10.45484 -10.19125 -10.09724 -9.74543 -9.62785 -9.06738 -8.89498 -8.20908 -7.43744 -5.83588 -3.80603 3.41511 3.48851 3.54851 4.25391 4.48367 4.61327 4.85852 5.00846 5.16240 5.52211 5.53191 5.55042 5.62876 5.75242 5.77889 5.84820 5.90874 5.98088 6.08727 6.25201 6.32436 6.33737 6.43716 6.51129 6.57395 6.60509 6.72359 6.92025 7.10500 7.56698 7.69542 7.73832 7.92683 8.08915 8.18104 8.65037 9.25248 9.80691 11.28642 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.008526 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.337881 B = 3283.115854 C = 3573.462827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.081 0.919 4 C 0.035 3.965 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.487 5.487 14 C 0.037 3.963 15 C -0.162 4.162 16 C 0.090 3.910 17 H 0.056 0.944 18 O -0.555 6.555 19 C 0.102 3.898 20 C -0.110 4.110 21 C -0.174 4.174 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.256 0.744 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.370 0.630 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 2.807 13.054 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.038 4.038 3 H 0.099 0.901 4 C -0.002 4.002 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.211 5.211 14 C -0.091 4.091 15 C -0.200 4.200 16 C 0.030 3.970 17 H 0.074 0.926 18 O -0.359 6.359 19 C 0.013 3.987 20 C -0.168 4.168 21 C -0.231 4.231 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.034 0.966 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.216 0.784 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.147 2.881 12.429 14.162 hybrid contribution -0.286 -0.189 0.261 0.430 sum -6.433 2.692 12.690 14.480 Atomic orbital electron populations 1.22747 0.99734 1.01593 1.00085 1.22325 0.90082 0.99266 0.92141 0.90079 1.19119 0.96280 0.95243 0.89590 1.21201 0.91878 1.32600 1.06640 0.92229 1.24999 0.97921 0.95992 0.96086 1.69974 1.35031 1.37240 1.12411 0.86597 0.86615 0.77543 0.77597 1.19777 1.21378 1.21470 1.63831 1.50376 1.05511 1.01348 1.23083 0.96926 0.95973 0.93080 1.23390 1.02194 0.96776 0.97642 1.23179 0.95360 0.94673 0.83755 0.92576 1.86568 1.53439 1.79966 1.15932 1.21677 0.95844 0.91805 0.89415 1.21449 0.94505 1.01468 0.99389 1.22702 1.01631 0.97100 1.01695 0.92592 0.92823 0.93470 0.96605 0.96546 0.93475 0.92679 0.90126 0.90083 0.91580 0.78445 0.92626 0.93032 0.92732 0.91633 0.93044 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.08 6.95 37.16 0.26 -2.82 16 2 C 0.07 1.41 1.79 -67.71 -0.12 1.29 16 3 H 0.08 1.67 5.20 -51.93 -0.27 1.40 16 4 C 0.03 0.90 4.47 -27.88 -0.12 0.77 16 5 C -0.48 -13.78 8.84 -34.44 -0.30 -14.09 16 6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.70 13.29 55.43 0.74 -26.97 16 9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 N -0.49 -9.36 4.39 -207.90 -0.91 -10.28 16 14 C 0.04 0.63 5.96 -2.30 -0.01 0.61 16 15 C -0.16 -2.23 6.80 -24.59 -0.17 -2.40 16 16 C 0.09 1.25 3.71 -24.91 -0.09 1.15 16 17 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 18 O -0.56 -7.09 11.82 -35.23 -0.42 -7.51 16 19 C 0.10 1.69 0.94 -130.62 -0.12 1.57 16 20 C -0.11 -1.90 8.07 37.16 0.30 -1.60 16 21 C -0.17 -2.62 7.05 37.16 0.26 -2.36 16 22 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.70 5.40 -51.93 -0.28 0.42 16 25 H 0.02 0.43 7.85 -51.93 -0.41 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.06 0.89 4.85 -51.93 -0.25 0.64 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.37 3.00 9.12 45.56 0.42 3.41 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.82 7.59 -51.93 -0.39 0.42 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.93 4.74 -51.93 -0.25 0.69 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.20 6.13 -51.93 -0.32 0.88 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -31.39 287.18 -6.95 -38.34 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.44 Total: 1.16 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.22 Total: -16.53 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.18 Total: -37.24 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.42 Total: -7.51 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.39 -6.95 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.613 kcal (2) G-P(sol) polarization free energy of solvation -31.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds