Wall clock time and date at job start Mon Mar 30 2020 04:14:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08998 * 109.47210 * 2 1
4 4 C 1.53000 * 109.46966 * 239.99829 * 2 1 3
5 5 C 1.50706 * 109.46910 * 175.00073 * 4 2 1
6 6 H 1.07995 * 120.00169 * 0.02562 * 5 4 2
7 7 C 1.37875 * 119.99936 * 180.02562 * 5 4 2
8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 4
9 9 Si 1.86795 * 120.00058 * 180.02562 * 7 5 4
10 10 H 1.48504 * 109.47272 * 0.02562 * 9 7 5
11 11 H 1.48508 * 109.47408 * 119.99863 * 9 7 5
12 12 H 1.48498 * 109.47120 * 239.99990 * 9 7 5
13 13 N 1.46905 * 109.46689 * 120.00128 * 2 1 3
14 14 C 1.47843 * 111.00101 * 38.65866 * 13 2 1
15 15 C 1.54908 * 104.79242 * 213.63513 * 14 13 2
16 16 C 1.55139 * 101.65331 * 37.06908 * 15 14 13
17 17 H 1.09000 * 110.85672 * 82.80190 * 16 15 14
18 18 O 1.42904 * 110.70410 * 205.96230 * 16 15 14
19 19 C 1.47440 * 111.00075 * 277.81082 * 13 2 1
20 20 C 1.52998 * 109.89229 * 242.67003 * 19 13 2
21 21 C 1.53007 * 109.88717 * 3.85673 * 19 13 2
22 22 H 1.08998 * 109.47229 * 161.52806 * 1 2 3
23 23 H 1.09004 * 109.46737 * 41.52900 * 1 2 3
24 24 H 1.08994 * 109.47113 * 281.53059 * 1 2 3
25 25 H 1.09003 * 109.47275 * 295.00219 * 4 2 1
26 26 H 1.09001 * 109.47019 * 55.00664 * 4 2 1
27 27 H 0.96997 * 120.00620 * 179.97438 * 8 7 5
28 28 H 1.08993 * 110.37501 * 332.46346 * 14 13 2
29 29 H 1.08994 * 110.37284 * 94.80734 * 14 13 2
30 30 H 1.09001 * 110.99156 * 278.97848 * 15 14 13
31 31 H 1.09005 * 111.01970 * 155.17698 * 15 14 13
32 32 H 0.96699 * 114.00200 * 293.60122 * 18 16 15
33 33 H 1.08997 * 109.47397 * 59.99414 * 20 19 13
34 34 H 1.08999 * 109.47436 * 180.02562 * 20 19 13
35 35 H 1.09004 * 109.46704 * 299.99958 * 20 19 13
36 36 H 1.08994 * 109.47215 * 60.81230 * 21 19 13
37 37 H 1.08996 * 109.47003 * 180.81606 * 21 19 13
38 38 H 1.09001 * 109.47032 * 300.81508 * 21 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 -1.2492
5 6 3.5420 -0.6150 -1.3127
6 1 4.0791 -0.0862 -0.5392
7 6 4.2304 -1.1927 -2.3583
8 7 3.5764 -1.8370 -3.3000
9 14 6.0921 -1.0615 -2.4366
10 1 6.5840 -0.2931 -1.2649
11 1 6.6855 -2.4228 -2.4196
12 1 6.4871 -0.3650 -3.6872
13 7 2.0196 -0.6926 1.1995
14 6 1.1800 -1.8686 1.5121
15 6 1.1838 -1.9575 3.0586
16 6 1.1567 -0.4588 3.4586
17 1 0.1387 -0.0697 3.4368
18 8 1.7403 -0.2698 4.7493
19 6 2.0194 0.2081 2.3668
20 6 3.4490 0.3991 2.8773
21 6 1.4163 1.5603 1.9807
22 1 -0.3633 -0.9747 -0.3256
23 1 -0.3633 0.7694 -0.6814
24 1 -0.3633 0.2054 1.0069
25 1 1.7516 -1.7716 -1.2056
26 1 1.6055 -0.2617 -2.1370
27 1 4.0607 -2.2432 -4.0358
28 1 0.1654 -1.7194 1.1430
29 1 1.6135 -2.7701 1.0791
30 1 2.0912 -2.4416 3.4197
31 1 0.2962 -2.4750 3.4226
32 1 1.2366 -0.6701 5.4712
33 1 4.0617 0.8340 2.0877
34 1 3.4408 1.0653 3.7400
35 1 3.8628 -0.5664 3.1682
36 1 0.3872 1.4183 1.6509
37 1 1.4327 2.2253 2.8442
38 1 1.9995 2.0006 1.1719
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695885767.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:14:10
Heat of formation + Delta-G solvation = -32.729192 kcal
Electronic energy + Delta-G solvation = -17292.399478 eV
Core-core repulsion = 14749.411027 eV
Total energy + Delta-G solvation = -2542.988451 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.06725 -36.36538 -33.49788 -32.11469 -31.87436 -28.04799 -27.73083 -26.37043
-24.51774 -23.13314 -21.68061 -19.63252 -17.76937 -17.23264 -16.14990 -15.61122
-14.92400 -14.66902 -14.17212 -14.00686 -13.43746 -12.72265 -12.59001 -12.17006
-11.98864 -11.78025 -11.67288 -11.58990 -11.37371 -11.18319 -10.89172 -10.76935
-10.52879 -10.45484 -10.19125 -10.09724 -9.74543 -9.62785 -9.06738 -8.89498
-8.20908 -7.43744 -5.83588 -3.80603 3.41511 3.48851 3.54851 4.25391
4.48367 4.61327 4.85852 5.00846 5.16240 5.52211 5.53191 5.55042
5.62876 5.75242 5.77889 5.84820 5.90874 5.98088 6.08727 6.25201
6.32436 6.33737 6.43716 6.51129 6.57395 6.60509 6.72359 6.92025
7.10500 7.56698 7.69542 7.73832 7.92683 8.08915 8.18104 8.65037
9.25248 9.80691 11.28642
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.031512 B = 0.008526 C = 0.007834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.337881 B = 3283.115854 C = 3573.462827
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.070 3.930
3 H 0.081 0.919
4 C 0.035 3.965
5 C -0.485 4.485
6 H 0.059 0.941
7 C 0.049 3.951
8 N -0.905 5.905
9 Si 0.888 3.112
10 H -0.273 1.273
11 H -0.287 1.287
12 H -0.288 1.288
13 N -0.487 5.487
14 C 0.037 3.963
15 C -0.162 4.162
16 C 0.090 3.910
17 H 0.056 0.944
18 O -0.555 6.555
19 C 0.102 3.898
20 C -0.110 4.110
21 C -0.174 4.174
22 H 0.055 0.945
23 H 0.053 0.947
24 H 0.047 0.953
25 H 0.016 0.984
26 H 0.016 0.984
27 H 0.256 0.744
28 H 0.055 0.945
29 H 0.080 0.920
30 H 0.081 0.919
31 H 0.066 0.934
32 H 0.370 0.630
33 H 0.055 0.945
34 H 0.051 0.949
35 H 0.054 0.946
36 H 0.065 0.935
37 H 0.051 0.949
38 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.154 2.807 13.054 15.148
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.038 4.038
3 H 0.099 0.901
4 C -0.002 4.002
5 C -0.523 4.523
6 H 0.078 0.922
7 C -0.150 4.150
8 N -0.547 5.547
9 Si 0.716 3.284
10 H -0.198 1.198
11 H -0.214 1.214
12 H -0.215 1.215
13 N -0.211 5.211
14 C -0.091 4.091
15 C -0.200 4.200
16 C 0.030 3.970
17 H 0.074 0.926
18 O -0.359 6.359
19 C 0.013 3.987
20 C -0.168 4.168
21 C -0.231 4.231
22 H 0.074 0.926
23 H 0.072 0.928
24 H 0.065 0.935
25 H 0.034 0.966
26 H 0.035 0.965
27 H 0.065 0.935
28 H 0.073 0.927
29 H 0.099 0.901
30 H 0.099 0.901
31 H 0.084 0.916
32 H 0.216 0.784
33 H 0.074 0.926
34 H 0.070 0.930
35 H 0.073 0.927
36 H 0.084 0.916
37 H 0.070 0.930
38 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -6.147 2.881 12.429 14.162
hybrid contribution -0.286 -0.189 0.261 0.430
sum -6.433 2.692 12.690 14.480
Atomic orbital electron populations
1.22747 0.99734 1.01593 1.00085 1.22325 0.90082 0.99266 0.92141
0.90079 1.19119 0.96280 0.95243 0.89590 1.21201 0.91878 1.32600
1.06640 0.92229 1.24999 0.97921 0.95992 0.96086 1.69974 1.35031
1.37240 1.12411 0.86597 0.86615 0.77543 0.77597 1.19777 1.21378
1.21470 1.63831 1.50376 1.05511 1.01348 1.23083 0.96926 0.95973
0.93080 1.23390 1.02194 0.96776 0.97642 1.23179 0.95360 0.94673
0.83755 0.92576 1.86568 1.53439 1.79966 1.15932 1.21677 0.95844
0.91805 0.89415 1.21449 0.94505 1.01468 0.99389 1.22702 1.01631
0.97100 1.01695 0.92592 0.92823 0.93470 0.96605 0.96546 0.93475
0.92679 0.90126 0.90083 0.91580 0.78445 0.92626 0.93032 0.92732
0.91633 0.93044 0.90782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.08 6.95 37.16 0.26 -2.82 16
2 C 0.07 1.41 1.79 -67.71 -0.12 1.29 16
3 H 0.08 1.67 5.20 -51.93 -0.27 1.40 16
4 C 0.03 0.90 4.47 -27.88 -0.12 0.77 16
5 C -0.48 -13.78 8.84 -34.44 -0.30 -14.09 16
6 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16
7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16
8 N -0.91 -27.70 13.29 55.43 0.74 -26.97 16
9 Si 0.89 22.47 29.54 -169.99 -5.02 17.45 16
10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16
11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
13 N -0.49 -9.36 4.39 -207.90 -0.91 -10.28 16
14 C 0.04 0.63 5.96 -2.30 -0.01 0.61 16
15 C -0.16 -2.23 6.80 -24.59 -0.17 -2.40 16
16 C 0.09 1.25 3.71 -24.91 -0.09 1.15 16
17 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16
18 O -0.56 -7.09 11.82 -35.23 -0.42 -7.51 16
19 C 0.10 1.69 0.94 -130.62 -0.12 1.57 16
20 C -0.11 -1.90 8.07 37.16 0.30 -1.60 16
21 C -0.17 -2.62 7.05 37.16 0.26 -2.36 16
22 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16
23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.05 0.70 5.40 -51.93 -0.28 0.42 16
25 H 0.02 0.43 7.85 -51.93 -0.41 0.03 16
26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16
28 H 0.06 0.89 4.85 -51.93 -0.25 0.64 16
29 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16
30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16
31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
32 H 0.37 3.00 9.12 45.56 0.42 3.41 16
33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.05 0.82 7.59 -51.93 -0.39 0.42 16
35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
36 H 0.06 0.93 4.74 -51.93 -0.25 0.69 16
37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
38 H 0.07 1.20 6.13 -51.93 -0.32 0.88 16
LS Contribution 287.18 15.07 4.33 4.33
Total: -1.00 -31.39 287.18 -6.95 -38.34
By element:
Atomic # 1 Polarization: 6.60 SS G_CDS: -5.44 Total: 1.16 kcal
Atomic # 6 Polarization: -16.31 SS G_CDS: -0.22 Total: -16.53 kcal
Atomic # 7 Polarization: -37.07 SS G_CDS: -0.18 Total: -37.24 kcal
Atomic # 8 Polarization: -7.09 SS G_CDS: -0.42 Total: -7.51 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -31.39 -6.95 -38.34 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695885767.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.613 kcal
(2) G-P(sol) polarization free energy of solvation -31.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.950 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds