Wall clock time and date at job start Mon Mar 30 2020 04:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47210 * 2 1 4 4 C 1.53000 * 109.46966 * 239.99829 * 2 1 3 5 5 C 1.50706 * 109.46910 * 175.00073 * 4 2 1 6 6 H 1.07995 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47272 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.47408 * 119.99863 * 9 7 5 12 12 H 1.48498 * 109.47120 * 239.99990 * 9 7 5 13 13 N 1.46905 * 109.46689 * 120.00128 * 2 1 3 14 14 C 1.47843 * 111.00101 * 38.65866 * 13 2 1 15 15 C 1.54908 * 104.79242 * 213.63513 * 14 13 2 16 16 C 1.55139 * 101.65331 * 37.06908 * 15 14 13 17 17 H 1.09000 * 110.85672 * 82.80190 * 16 15 14 18 18 O 1.42904 * 110.70410 * 205.96230 * 16 15 14 19 19 C 1.47440 * 111.00075 * 277.81082 * 13 2 1 20 20 C 1.52998 * 109.89229 * 242.67003 * 19 13 2 21 21 C 1.53007 * 109.88717 * 3.85673 * 19 13 2 22 22 H 1.08998 * 109.47229 * 161.52806 * 1 2 3 23 23 H 1.09004 * 109.46737 * 41.52900 * 1 2 3 24 24 H 1.08994 * 109.47113 * 281.53059 * 1 2 3 25 25 H 1.09003 * 109.47275 * 295.00219 * 4 2 1 26 26 H 1.09001 * 109.47019 * 55.00664 * 4 2 1 27 27 H 0.96997 * 120.00620 * 179.97438 * 8 7 5 28 28 H 1.08993 * 110.37501 * 332.46346 * 14 13 2 29 29 H 1.08994 * 110.37284 * 94.80734 * 14 13 2 30 30 H 1.09001 * 110.99156 * 278.97848 * 15 14 13 31 31 H 1.09005 * 111.01970 * 155.17698 * 15 14 13 32 32 H 0.96699 * 114.00200 * 293.60122 * 18 16 15 33 33 H 1.08997 * 109.47397 * 59.99414 * 20 19 13 34 34 H 1.08999 * 109.47436 * 180.02562 * 20 19 13 35 35 H 1.09004 * 109.46704 * 299.99958 * 20 19 13 36 36 H 1.08994 * 109.47215 * 60.81230 * 21 19 13 37 37 H 1.08996 * 109.47003 * 180.81606 * 21 19 13 38 38 H 1.09001 * 109.47032 * 300.81508 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0791 -0.0862 -0.5392 7 6 4.2304 -1.1927 -2.3583 8 7 3.5764 -1.8370 -3.3000 9 14 6.0921 -1.0615 -2.4366 10 1 6.5840 -0.2931 -1.2649 11 1 6.6855 -2.4228 -2.4196 12 1 6.4871 -0.3650 -3.6872 13 7 2.0196 -0.6926 1.1995 14 6 1.1800 -1.8686 1.5121 15 6 1.1838 -1.9575 3.0586 16 6 1.1567 -0.4588 3.4586 17 1 0.1387 -0.0697 3.4368 18 8 1.7403 -0.2698 4.7493 19 6 2.0194 0.2081 2.3668 20 6 3.4490 0.3991 2.8773 21 6 1.4163 1.5603 1.9807 22 1 -0.3633 -0.9747 -0.3256 23 1 -0.3633 0.7694 -0.6814 24 1 -0.3633 0.2054 1.0069 25 1 1.7516 -1.7716 -1.2056 26 1 1.6055 -0.2617 -2.1370 27 1 4.0607 -2.2432 -4.0358 28 1 0.1654 -1.7194 1.1430 29 1 1.6135 -2.7701 1.0791 30 1 2.0912 -2.4416 3.4197 31 1 0.2962 -2.4750 3.4226 32 1 1.2366 -0.6701 5.4712 33 1 4.0617 0.8340 2.0877 34 1 3.4408 1.0653 3.7400 35 1 3.8628 -0.5664 3.1682 36 1 0.3872 1.4183 1.6509 37 1 1.4327 2.2253 2.8442 38 1 1.9995 2.0006 1.1719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:09 Heat of formation + Delta-G solvation = -55.749159 kcal Electronic energy + Delta-G solvation = -17293.397698 eV Core-core repulsion = 14749.411027 eV Total energy + Delta-G solvation = -2543.986672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37608 -37.54640 -35.29692 -33.72400 -33.33232 -29.65230 -29.34665 -27.77349 -25.79053 -25.04597 -23.10363 -21.04221 -19.18676 -18.36272 -18.24991 -16.96474 -16.60780 -16.15046 -15.73345 -15.16047 -14.72047 -14.40541 -14.15906 -13.60886 -13.52184 -13.37565 -13.15763 -13.03847 -12.81467 -12.70959 -12.55134 -12.41262 -12.20755 -11.87799 -11.81707 -11.48226 -11.22888 -11.02501 -10.82463 -10.74223 -10.47204 -8.86254 -8.09787 -6.13780 1.38871 1.40115 1.53275 2.46820 3.07040 3.25754 3.31998 3.69348 3.81644 4.07825 4.23121 4.29459 4.34010 4.44799 4.51336 4.57991 4.66743 4.75267 4.86727 4.93140 5.03396 5.05225 5.13016 5.15035 5.22557 5.26446 5.28172 5.40239 5.50041 5.59306 5.75367 5.91078 6.35173 6.46715 6.59530 6.98433 7.00403 7.51637 9.02560 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.008526 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.337881 B = 3283.115854 C = 3573.462827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 H 0.077 0.923 4 C 0.041 3.959 5 C -0.494 4.494 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.518 5.518 14 C 0.032 3.968 15 C -0.150 4.150 16 C 0.103 3.897 17 H 0.080 0.920 18 O -0.566 6.566 19 C 0.093 3.907 20 C -0.104 4.104 21 C -0.168 4.168 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.076 0.924 25 H -0.013 1.013 26 H -0.009 1.009 27 H 0.258 0.742 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.393 0.607 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 3.528 15.097 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.029 4.029 3 H 0.095 0.905 4 C 0.004 3.996 5 C -0.532 4.532 6 H 0.072 0.928 7 C -0.203 4.203 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.243 5.243 14 C -0.095 4.095 15 C -0.188 4.188 16 C 0.043 3.957 17 H 0.098 0.902 18 O -0.373 6.373 19 C 0.004 3.996 20 C -0.162 4.162 21 C -0.225 4.225 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.006 0.994 26 H 0.009 0.991 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.243 0.757 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.916 3.603 14.501 16.465 hybrid contribution -0.024 -0.432 -0.349 0.556 sum -6.940 3.170 14.152 16.078 Atomic orbital electron populations 1.22609 0.96782 1.01646 1.02078 1.21993 0.92406 0.98023 0.90432 0.90468 1.18979 0.95013 0.93940 0.91687 1.21509 0.93481 1.32014 1.06241 0.92806 1.25840 1.02744 0.95803 0.95868 1.70095 1.36894 1.38249 1.13095 0.85558 0.80908 0.77622 0.77901 1.19173 1.21008 1.20569 1.63556 1.51768 1.06809 1.02124 1.23085 0.96792 0.94001 0.95646 1.23335 1.03229 0.97516 0.94747 1.22961 0.95514 0.93743 0.83456 0.90200 1.86511 1.54352 1.80313 1.16136 1.21752 0.96026 0.92340 0.89512 1.21392 0.94976 1.00742 0.99130 1.22626 1.01693 0.96382 1.01842 0.93203 0.91983 0.90550 0.99438 0.99072 0.93337 0.91463 0.93198 0.91324 0.88189 0.75738 0.94991 0.91459 0.94137 0.90451 0.91199 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 6.95 71.98 0.50 -5.04 16 2 C 0.08 3.24 1.79 44.92 0.08 3.32 16 3 H 0.08 3.19 5.20 -2.39 -0.01 3.18 16 4 C 0.04 2.19 4.47 29.85 0.13 2.33 16 5 C -0.49 -28.91 8.84 25.60 0.23 -28.68 16 6 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 8 N -0.94 -59.06 13.29 21.45 0.28 -58.77 16 9 Si 0.95 46.91 29.54 68.60 2.03 48.94 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 N -0.52 -19.80 4.39 -811.66 -3.56 -23.36 16 14 C 0.03 1.07 5.96 86.77 0.52 1.59 16 15 C -0.15 -3.75 6.80 31.98 0.22 -3.53 16 16 C 0.10 2.48 3.71 31.77 0.12 2.60 16 17 H 0.08 1.61 7.83 -2.39 -0.02 1.59 16 18 O -0.57 -12.29 11.82 -148.98 -1.76 -14.05 16 19 C 0.09 2.91 0.94 3.87 0.00 2.91 16 20 C -0.10 -3.52 8.07 71.98 0.58 -2.94 16 21 C -0.17 -4.66 7.05 71.98 0.51 -4.16 16 22 H 0.05 1.65 6.89 -2.39 -0.02 1.64 16 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 24 H 0.08 2.00 5.40 -2.39 -0.01 1.99 16 25 H -0.01 -0.74 7.85 -2.39 -0.02 -0.76 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.07 2.06 4.85 -2.39 -0.01 2.04 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.39 4.62 9.12 -74.06 -0.68 3.95 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 2.01 7.59 -2.39 -0.02 1.99 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.94 4.74 -2.39 -0.01 1.92 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.74 6.13 -2.39 -0.01 1.73 16 Total: -1.00 -69.14 287.18 0.69 -68.45 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.36 Total: 10.35 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.35 Total: -31.55 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -3.28 Total: -82.14 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.76 Total: -14.05 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -69.14 0.69 -68.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.700 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds