Wall clock time and date at job start Mon Mar 30 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46582 * 2 1 4 4 C 1.52995 * 109.47050 * 119.99885 * 2 1 3 5 5 C 1.50701 * 109.46969 * 190.84428 * 4 2 1 6 6 H 1.08000 * 119.99836 * 5.68461 * 5 4 2 7 7 C 1.37878 * 120.00165 * 185.96539 * 5 4 2 8 8 N 1.31519 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46993 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47106 * 119.99516 * 9 7 5 12 12 H 1.48496 * 109.47053 * 239.99414 * 9 7 5 13 13 N 1.46899 * 109.46747 * 240.00344 * 2 1 3 14 14 C 1.48527 * 110.99761 * 182.94845 * 13 2 1 15 15 C 1.54944 * 103.22799 * 200.27613 * 14 13 2 16 16 C 1.54598 * 102.91812 * 37.41704 * 15 14 13 17 17 H 1.09004 * 110.30589 * 219.12935 * 16 15 14 18 18 O 1.42890 * 110.30975 * 97.05631 * 16 15 14 19 19 C 1.47897 * 111.00068 * 65.55271 * 13 2 1 20 20 C 1.53004 * 109.91955 * 265.19444 * 19 13 2 21 21 C 1.52997 * 109.92186 * 26.49157 * 19 13 2 22 22 H 1.08997 * 109.47196 * 177.24640 * 1 2 3 23 23 H 1.09006 * 109.46682 * 297.23761 * 1 2 3 24 24 H 1.09000 * 109.47736 * 57.23654 * 1 2 3 25 25 H 1.09004 * 109.46860 * 70.84865 * 4 2 1 26 26 H 1.08990 * 109.47526 * 310.84489 * 4 2 1 27 27 H 0.97002 * 119.99965 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.67472 * 318.71448 * 14 13 2 29 29 H 1.09011 * 110.66894 * 81.67926 * 14 13 2 30 30 H 1.09003 * 110.72331 * 155.77343 * 15 14 13 31 31 H 1.08995 * 110.72207 * 278.88113 * 15 14 13 32 32 H 0.96709 * 113.99967 * 61.44941 * 18 16 15 33 33 H 1.09004 * 109.46802 * 59.99805 * 20 19 13 34 34 H 1.08992 * 109.47347 * 180.02562 * 20 19 13 35 35 H 1.09003 * 109.47024 * 300.00389 * 20 19 13 36 36 H 1.09005 * 109.47113 * 64.80338 * 21 19 13 37 37 H 1.09000 * 109.47749 * 184.80999 * 21 19 13 38 38 H 1.09003 * 109.47039 * 304.80730 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5231 -0.4939 1.3902 6 1 4.0328 0.1784 0.7160 7 6 4.2303 -1.1487 2.3762 8 7 3.6104 -1.9712 3.1941 9 14 6.0685 -0.8664 2.5514 10 1 6.5220 0.0978 1.5171 11 1 6.3588 -0.3185 3.9007 12 1 6.7861 -2.1545 2.3753 13 7 2.0196 -0.6924 -1.1995 14 6 3.5026 -0.7743 -1.1987 15 6 3.8448 -1.0217 -2.6895 16 6 2.8057 -0.1504 -3.4318 17 1 2.4438 -0.6678 -4.3203 18 8 3.3796 1.1080 -3.7909 19 6 1.6575 0.0511 -2.4256 20 6 0.3539 -0.5021 -3.0049 21 6 1.5000 1.5389 -2.1057 22 1 -0.3633 -1.0264 -0.0494 23 1 -0.3633 0.4704 0.9138 24 1 -0.3634 0.5561 -0.8641 25 1 1.8432 -1.7894 1.1578 26 1 1.5275 -0.3313 2.1286 27 1 4.1079 -2.4316 3.8880 28 1 3.9396 0.1629 -0.8541 29 1 3.8417 -1.6057 -0.5805 30 1 4.8582 -0.6882 -2.9131 31 1 3.7218 -2.0744 -2.9439 32 1 4.1357 1.0389 -4.3900 33 1 -0.4444 -0.3947 -2.2705 34 1 0.0942 0.0503 -3.9078 35 1 0.4834 -1.5565 -3.2491 36 1 2.4616 1.9476 -1.7951 37 1 1.1506 2.0665 -2.9932 38 1 0.7755 1.6628 -1.3007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695885770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:12 Heat of formation + Delta-G solvation = -36.301273 kcal Electronic energy + Delta-G solvation = -17462.789892 eV Core-core repulsion = 14919.646544 eV Total energy + Delta-G solvation = -2543.143348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.86711 -36.19265 -33.53190 -32.38634 -31.64910 -28.04188 -27.27482 -26.84519 -24.59257 -22.92563 -20.96449 -19.85994 -17.92696 -16.82568 -16.40210 -15.62022 -14.96451 -14.49792 -14.14130 -13.52937 -13.06433 -13.01442 -12.43171 -12.22327 -12.13069 -11.86536 -11.47445 -11.24649 -11.10477 -11.05850 -10.89972 -10.68779 -10.54242 -10.46445 -10.32122 -10.10830 -9.80359 -9.53261 -8.96343 -8.80232 -8.32333 -7.48913 -5.96495 -3.94879 3.30740 3.39205 3.42008 4.32215 4.47450 4.72398 5.05915 5.17946 5.31111 5.39092 5.63112 5.68338 5.89864 5.91121 5.96350 6.05486 6.06875 6.15486 6.19812 6.27485 6.34470 6.42592 6.49960 6.65768 6.75069 6.79934 6.98888 7.02214 7.14931 7.58123 7.74623 7.77870 7.92166 8.04421 8.18931 8.45302 9.07819 9.64696 11.14811 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.009839 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.972982 B = 2845.026698 C = 3417.168637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.039 0.961 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.494 5.494 14 C 0.059 3.941 15 C -0.168 4.168 16 C 0.100 3.900 17 H 0.056 0.944 18 O -0.561 6.561 19 C 0.092 3.908 20 C -0.133 4.133 21 C -0.160 4.160 22 H 0.057 0.943 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.030 0.970 26 H 0.016 0.984 27 H 0.258 0.742 28 H 0.053 0.947 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.369 0.631 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 3.246 -12.610 13.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 H 0.057 0.943 4 C -0.011 4.011 5 C -0.556 4.556 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.219 5.219 14 C -0.068 4.068 15 C -0.206 4.206 16 C 0.041 3.959 17 H 0.074 0.926 18 O -0.366 6.366 19 C 0.002 3.998 20 C -0.191 4.191 21 C -0.218 4.218 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.216 0.784 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.358 2.833 -12.043 12.820 hybrid contribution 1.933 0.630 -0.124 2.037 sum -1.425 3.463 -12.167 12.730 Atomic orbital electron populations 1.22149 0.96723 1.01558 1.00250 1.21975 0.93158 0.96478 0.91893 0.94341 1.19184 0.95409 0.96558 0.89936 1.21559 0.93751 1.25496 1.14746 0.91934 1.24967 0.97901 0.95489 0.95983 1.69980 1.35551 1.28870 1.18899 0.86675 0.86313 0.77944 0.77951 1.19797 1.21161 1.21083 1.64958 1.10746 1.45871 1.00320 1.23494 0.87828 1.02787 0.92697 1.23402 0.98158 1.00099 0.98934 1.22697 0.93468 0.83635 0.96099 0.92620 1.86575 1.50380 1.30340 1.69276 1.21739 0.93540 0.93168 0.91370 1.21935 0.96624 1.00665 0.99844 1.22245 1.02322 0.95979 1.01258 0.92442 0.93106 0.93058 0.95122 0.96612 0.93204 0.92882 0.87968 0.91466 0.90867 0.78424 0.91383 0.93410 0.92392 0.92261 0.93222 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 7.58 37.16 0.28 -2.40 16 2 C 0.07 1.54 1.63 -67.71 -0.11 1.43 16 3 H 0.04 0.85 5.99 -51.93 -0.31 0.54 16 4 C 0.03 0.68 4.47 -27.89 -0.12 0.55 16 5 C -0.52 -14.05 6.40 -34.44 -0.22 -14.28 16 6 H 0.06 1.67 5.09 -52.49 -0.27 1.40 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.49 -9.71 4.76 -207.14 -0.99 -10.69 16 14 C 0.06 1.20 4.59 -1.90 -0.01 1.19 16 15 C -0.17 -2.67 6.80 -24.87 -0.17 -2.84 16 16 C 0.10 1.50 3.96 -25.37 -0.10 1.40 16 17 H 0.06 0.74 7.69 -51.93 -0.40 0.34 16 18 O -0.56 -7.99 11.47 -35.23 -0.40 -8.40 16 19 C 0.09 1.52 0.72 -130.53 -0.09 1.43 16 20 C -0.13 -1.92 8.34 37.16 0.31 -1.61 16 21 C -0.16 -2.67 6.16 37.16 0.23 -2.44 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.81 4.11 -51.93 -0.21 0.60 16 25 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.05 1.18 5.95 -51.93 -0.31 0.87 16 29 H 0.10 2.36 6.78 -51.92 -0.35 2.01 16 30 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.37 3.61 9.10 45.56 0.41 4.03 16 33 H 0.07 0.98 5.25 -51.93 -0.27 0.71 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.10 7.36 -51.93 -0.38 0.72 16 37 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.07 1.12 4.30 -51.93 -0.22 0.90 16 LS Contribution 279.54 15.07 4.21 4.21 Total: -1.00 -29.91 279.54 -6.81 -36.72 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.25 Total: 3.64 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -0.10 Total: -16.05 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.25 Total: -36.55 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.40 Total: -8.40 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.91 -6.81 -36.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.424 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds