Wall clock time and date at job start Mon Mar 30 2020 04:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46582 * 2 1 4 4 C 1.52995 * 109.47050 * 119.99885 * 2 1 3 5 5 C 1.50701 * 109.46969 * 190.84428 * 4 2 1 6 6 H 1.08000 * 119.99836 * 5.68461 * 5 4 2 7 7 C 1.37878 * 120.00165 * 185.96539 * 5 4 2 8 8 N 1.31519 * 120.00029 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46993 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47106 * 119.99516 * 9 7 5 12 12 H 1.48496 * 109.47053 * 239.99414 * 9 7 5 13 13 N 1.46899 * 109.46747 * 240.00344 * 2 1 3 14 14 C 1.48527 * 110.99761 * 182.94845 * 13 2 1 15 15 C 1.54944 * 103.22799 * 200.27613 * 14 13 2 16 16 C 1.54598 * 102.91812 * 37.41704 * 15 14 13 17 17 H 1.09004 * 110.30589 * 219.12935 * 16 15 14 18 18 O 1.42890 * 110.30975 * 97.05631 * 16 15 14 19 19 C 1.47897 * 111.00068 * 65.55271 * 13 2 1 20 20 C 1.53004 * 109.91955 * 265.19444 * 19 13 2 21 21 C 1.52997 * 109.92186 * 26.49157 * 19 13 2 22 22 H 1.08997 * 109.47196 * 177.24640 * 1 2 3 23 23 H 1.09006 * 109.46682 * 297.23761 * 1 2 3 24 24 H 1.09000 * 109.47736 * 57.23654 * 1 2 3 25 25 H 1.09004 * 109.46860 * 70.84865 * 4 2 1 26 26 H 1.08990 * 109.47526 * 310.84489 * 4 2 1 27 27 H 0.97002 * 119.99965 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.67472 * 318.71448 * 14 13 2 29 29 H 1.09011 * 110.66894 * 81.67926 * 14 13 2 30 30 H 1.09003 * 110.72331 * 155.77343 * 15 14 13 31 31 H 1.08995 * 110.72207 * 278.88113 * 15 14 13 32 32 H 0.96709 * 113.99967 * 61.44941 * 18 16 15 33 33 H 1.09004 * 109.46802 * 59.99805 * 20 19 13 34 34 H 1.08992 * 109.47347 * 180.02562 * 20 19 13 35 35 H 1.09003 * 109.47024 * 300.00389 * 20 19 13 36 36 H 1.09005 * 109.47113 * 64.80338 * 21 19 13 37 37 H 1.09000 * 109.47749 * 184.80999 * 21 19 13 38 38 H 1.09003 * 109.47039 * 304.80730 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5231 -0.4939 1.3902 6 1 4.0328 0.1784 0.7160 7 6 4.2303 -1.1487 2.3762 8 7 3.6104 -1.9712 3.1941 9 14 6.0685 -0.8664 2.5514 10 1 6.5220 0.0978 1.5171 11 1 6.3588 -0.3185 3.9007 12 1 6.7861 -2.1545 2.3753 13 7 2.0196 -0.6924 -1.1995 14 6 3.5026 -0.7743 -1.1987 15 6 3.8448 -1.0217 -2.6895 16 6 2.8057 -0.1504 -3.4318 17 1 2.4438 -0.6678 -4.3203 18 8 3.3796 1.1080 -3.7909 19 6 1.6575 0.0511 -2.4256 20 6 0.3539 -0.5021 -3.0049 21 6 1.5000 1.5389 -2.1057 22 1 -0.3633 -1.0264 -0.0494 23 1 -0.3633 0.4704 0.9138 24 1 -0.3634 0.5561 -0.8641 25 1 1.8432 -1.7894 1.1578 26 1 1.5275 -0.3313 2.1286 27 1 4.1079 -2.4316 3.8880 28 1 3.9396 0.1629 -0.8541 29 1 3.8417 -1.6057 -0.5805 30 1 4.8582 -0.6882 -2.9131 31 1 3.7218 -2.0744 -2.9439 32 1 4.1357 1.0389 -4.3900 33 1 -0.4444 -0.3947 -2.2705 34 1 0.0942 0.0503 -3.9078 35 1 0.4834 -1.5565 -3.2491 36 1 2.4616 1.9476 -1.7951 37 1 1.1506 2.0665 -2.9932 38 1 0.7755 1.6628 -1.3007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695885770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:12 Heat of formation + Delta-G solvation = -58.513461 kcal Electronic energy + Delta-G solvation = -17463.753085 eV Core-core repulsion = 14919.646544 eV Total energy + Delta-G solvation = -2544.106541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.27376 -37.51848 -35.33511 -33.90990 -33.32812 -29.57404 -29.10379 -28.11900 -26.01081 -24.84159 -22.44178 -21.44331 -19.40387 -18.51323 -17.90068 -17.10094 -16.55916 -16.29857 -15.57667 -14.98998 -14.62341 -14.38873 -13.98538 -13.80579 -13.66234 -13.48995 -12.96502 -12.87695 -12.64763 -12.61010 -12.49667 -12.34254 -12.22710 -12.02788 -11.85217 -11.70663 -11.21020 -10.87603 -10.77600 -10.68414 -10.50937 -9.08344 -8.14998 -6.19292 1.36310 1.37736 1.49189 2.41187 3.06793 3.18880 3.42992 3.78349 3.89643 4.11853 4.34926 4.38070 4.41342 4.47761 4.59531 4.68379 4.73849 4.79023 4.87619 4.99004 5.03308 5.04970 5.16486 5.19292 5.27871 5.30527 5.41258 5.49800 5.55242 5.56869 5.67653 5.87754 6.20271 6.34833 6.50196 6.90782 6.97284 7.43908 8.97402 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.009839 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.972982 B = 2845.026698 C = 3417.168637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.082 3.918 3 H 0.028 0.972 4 C 0.033 3.967 5 C -0.519 4.519 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.950 3.050 10 H -0.264 1.264 11 H -0.283 1.283 12 H -0.279 1.279 13 N -0.502 5.502 14 C 0.059 3.941 15 C -0.158 4.158 16 C 0.108 3.892 17 H 0.085 0.915 18 O -0.573 6.573 19 C 0.083 3.917 20 C -0.129 4.129 21 C -0.152 4.152 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.079 0.921 25 H -0.003 1.003 26 H -0.010 1.010 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.390 0.610 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.469 3.940 -15.081 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 H 0.046 0.954 4 C -0.004 4.004 5 C -0.557 4.557 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.776 3.224 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.205 1.205 13 N -0.227 5.227 14 C -0.069 4.069 15 C -0.197 4.197 16 C 0.049 3.951 17 H 0.103 0.897 18 O -0.381 6.381 19 C -0.007 4.007 20 C -0.187 4.187 21 C -0.210 4.210 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.016 0.984 26 H 0.008 0.992 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.240 0.760 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.086 0.914 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.157 3.539 -14.543 15.296 hybrid contribution 1.861 0.428 0.625 2.009 sum -1.295 3.967 -13.918 14.530 Atomic orbital electron populations 1.22074 0.94170 1.01911 1.01654 1.21732 0.95148 0.95001 0.90741 0.95396 1.19035 0.94983 0.94824 0.91540 1.21845 0.94574 1.24945 1.14309 0.91658 1.25806 1.02643 0.95340 0.95770 1.70114 1.37447 1.30174 1.19777 0.85610 0.80679 0.78094 0.78014 1.18761 1.20855 1.20515 1.64913 1.10201 1.46573 1.01042 1.23209 0.88409 0.99829 0.95467 1.23358 0.99682 1.01222 0.95403 1.22608 0.92271 0.83835 0.96401 0.89744 1.86531 1.51559 1.29910 1.70072 1.21967 0.95620 0.92753 0.90352 1.21911 0.94990 1.01127 1.00644 1.22157 1.00900 0.96173 1.01819 0.92706 0.92969 0.90286 0.98412 0.99197 0.93158 0.95437 0.91849 0.89758 0.89886 0.75982 0.91666 0.90878 0.92092 0.94680 0.91419 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 7.58 71.98 0.55 -4.44 16 2 C 0.08 3.52 1.63 44.92 0.07 3.59 16 3 H 0.03 1.26 5.99 -2.39 -0.01 1.24 16 4 C 0.03 1.80 4.47 29.85 0.13 1.94 16 5 C -0.52 -29.18 6.40 25.60 0.16 -29.01 16 6 H 0.07 3.59 5.09 -2.91 -0.01 3.57 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 9 Si 0.95 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 N -0.50 -19.59 4.76 -809.28 -3.85 -23.44 16 14 C 0.06 2.39 4.59 86.65 0.40 2.79 16 15 C -0.16 -4.71 6.80 31.80 0.22 -4.49 16 16 C 0.11 2.87 3.96 31.48 0.12 2.99 16 17 H 0.08 1.83 7.69 -2.38 -0.02 1.81 16 18 O -0.57 -14.36 11.47 -148.98 -1.71 -16.07 16 19 C 0.08 2.54 0.72 3.67 0.00 2.55 16 20 C -0.13 -3.28 8.34 71.98 0.60 -2.68 16 21 C -0.15 -4.78 6.16 71.98 0.44 -4.34 16 22 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.08 2.35 4.11 -2.39 -0.01 2.34 16 25 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 26 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.03 1.24 5.95 -2.39 -0.01 1.23 16 29 H 0.06 3.04 6.78 -2.38 -0.02 3.02 16 30 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.39 6.13 9.10 -74.05 -0.67 5.46 16 33 H 0.06 1.68 5.25 -2.38 -0.01 1.67 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.03 1.25 7.36 -2.38 -0.02 1.23 16 37 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.06 2.00 4.30 -2.39 -0.01 1.99 16 Total: -1.00 -66.32 279.54 0.29 -66.03 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.37 Total: 14.31 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 3.16 Total: -30.55 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.57 Total: -80.63 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.71 Total: -16.07 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.32 0.29 -66.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695885770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.514 kcal (2) G-P(sol) polarization free energy of solvation -66.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds