Wall clock time and date at job start Mon Mar 30 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 C 1.53001 * 109.46946 * 239.99684 * 2 1 3 5 5 C 1.50701 * 109.46947 * 168.85455 * 4 2 1 6 6 H 1.08003 * 119.99665 * 354.05777 * 5 4 2 7 7 C 1.37878 * 119.99840 * 174.04998 * 5 4 2 8 8 N 1.31512 * 119.99574 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99974 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46981 * 89.99806 * 9 7 5 11 11 H 1.48501 * 109.46622 * 209.99469 * 9 7 5 12 12 H 1.48496 * 109.46873 * 329.99350 * 9 7 5 13 13 N 1.46898 * 109.47023 * 119.99425 * 2 1 3 14 14 C 1.46847 * 111.00158 * 86.85145 * 13 2 1 15 15 C 1.53031 * 109.52749 * 185.83636 * 14 13 2 16 16 C 1.53118 * 109.28190 * 300.82389 * 15 14 13 17 17 C 1.53113 * 109.16057 * 57.64958 * 16 15 14 18 18 H 1.09001 * 109.53658 * 182.38846 * 17 16 15 19 19 O 1.42904 * 109.50242 * 62.29027 * 17 16 15 20 20 C 1.46841 * 111.00148 * 211.06191 * 13 2 1 21 21 H 1.09001 * 109.46626 * 294.17933 * 20 13 2 22 22 C 1.53001 * 109.46583 * 54.14480 * 20 13 2 23 23 H 1.08994 * 109.47131 * 175.00343 * 1 2 3 24 24 H 1.09001 * 109.46927 * 55.00168 * 1 2 3 25 25 H 1.09004 * 109.46936 * 295.00289 * 1 2 3 26 26 H 1.08999 * 109.46965 * 288.85105 * 4 2 1 27 27 H 1.08992 * 109.47077 * 48.85753 * 4 2 1 28 28 H 0.97002 * 119.99896 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46046 * 305.85926 * 14 13 2 30 30 H 1.09002 * 109.46067 * 65.81901 * 14 13 2 31 31 H 1.08998 * 109.50426 * 180.87409 * 15 14 13 32 32 H 1.09009 * 109.50292 * 60.76456 * 15 14 13 33 33 H 1.09003 * 109.51985 * 297.75036 * 16 15 14 34 34 H 1.08996 * 109.57511 * 177.59118 * 16 15 14 35 35 H 0.96697 * 114.00158 * 60.19521 * 19 17 16 36 36 H 1.09000 * 109.46889 * 51.13805 * 22 20 13 37 37 H 1.08997 * 109.47657 * 171.14037 * 22 20 13 38 38 H 1.09000 * 109.47102 * 291.14386 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5218 -0.4879 -1.3943 6 1 4.0295 0.1910 -0.7252 7 6 4.2292 -1.1413 -2.3811 8 7 5.5221 -0.9372 -2.5080 9 14 3.3507 -2.3151 -3.5386 10 1 2.8655 -1.5681 -4.7268 11 1 4.2918 -3.3786 -3.9729 12 1 2.1968 -2.9318 -2.8363 13 7 2.0197 -0.6924 1.1995 14 6 2.1241 -2.1385 0.9667 15 6 2.4955 -2.8416 2.2742 16 6 3.8301 -2.2901 2.7834 17 6 3.7089 -0.7754 2.9716 18 1 4.6682 -0.3702 3.2936 19 8 2.7165 -0.4955 3.9610 20 6 3.3023 -0.1321 1.6438 21 1 4.0665 -0.3343 0.8933 22 6 3.1605 1.3796 1.8320 23 1 -0.3633 -1.0237 -0.0895 24 1 -0.3633 0.5894 -0.8418 25 1 -0.3633 0.4344 0.9314 26 1 1.8481 -1.7902 -1.1554 27 1 1.5237 -0.3351 -2.1280 28 1 6.0198 -1.3965 -3.2024 29 1 1.1673 -2.5187 0.6088 30 1 2.8938 -2.3313 0.2193 31 1 2.5882 -3.9132 2.0975 32 1 1.7194 -2.6606 3.0179 33 1 4.6140 -2.5053 2.0573 34 1 4.0783 -2.7569 3.7366 35 1 2.9095 -0.8736 4.8298 36 1 2.2944 1.5878 2.4603 37 1 4.0583 1.7722 2.3093 38 1 3.0275 1.8558 0.8606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695904000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:14 Heat of formation + Delta-G solvation = -50.755743 kcal Electronic energy + Delta-G solvation = -17557.764875 eV Core-core repulsion = 15013.994734 eV Total energy + Delta-G solvation = -2543.770141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35336 -36.28759 -33.40942 -32.41929 -31.74098 -29.15833 -27.95837 -26.22635 -23.65063 -22.57049 -21.01382 -19.65003 -18.44645 -16.72201 -16.35887 -15.54477 -14.85197 -14.35961 -14.12876 -13.76193 -13.50919 -12.67015 -12.62854 -12.27646 -12.16024 -11.85574 -11.73890 -11.35453 -11.17760 -11.15173 -10.86568 -10.64571 -10.46543 -10.35322 -10.09807 -9.72603 -9.58506 -9.40730 -9.25384 -8.97631 -8.58588 -7.17802 -6.08339 -4.05757 3.26991 3.35042 3.38432 4.41192 4.64113 4.81347 5.22808 5.25637 5.26358 5.46367 5.69935 5.88742 5.91286 5.99379 6.13519 6.19790 6.22213 6.25340 6.28789 6.39454 6.41442 6.53208 6.59539 6.68210 6.70555 6.78528 6.88460 6.92852 7.09785 7.24755 7.31770 7.75494 8.01050 8.09170 8.17282 8.48713 8.95190 9.54411 11.03553 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.010498 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.113336 B = 2666.521265 C = 2836.280255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.079 3.921 3 H 0.077 0.923 4 C -0.048 4.048 5 C -0.518 4.518 6 H 0.079 0.921 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.507 5.507 14 C 0.050 3.950 15 C -0.109 4.109 16 C -0.152 4.152 17 C 0.114 3.886 18 H 0.047 0.953 19 O -0.548 6.548 20 C 0.079 3.921 21 H 0.089 0.911 22 C -0.137 4.137 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.028 0.972 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.359 0.641 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -1.470 9.814 11.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.086 4.086 5 C -0.555 4.555 6 H 0.096 0.904 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 N -0.231 5.231 14 C -0.078 4.078 15 C -0.147 4.147 16 C -0.190 4.190 17 C 0.055 3.945 18 H 0.065 0.935 19 O -0.351 6.351 20 C -0.029 4.029 21 H 0.106 0.894 22 C -0.195 4.195 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.203 0.797 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.399 -1.124 9.567 11.043 hybrid contribution 0.627 -1.186 -1.001 1.674 sum -4.772 -2.310 8.566 10.074 Atomic orbital electron populations 1.21776 0.96569 1.00619 1.00257 1.21746 0.93277 0.98674 0.89254 0.90515 1.20367 0.97408 0.96802 0.94013 1.21219 0.91333 1.26739 1.16242 0.90351 1.25007 0.94642 0.96483 0.97064 1.69909 1.06923 1.43399 1.33825 0.86860 0.79904 0.81331 0.81708 1.20399 1.21545 1.18993 1.62241 1.26360 1.02466 1.32074 1.22113 1.00915 0.88826 0.95950 1.21475 0.96796 0.98048 0.98356 1.22262 0.99004 0.96802 1.00923 1.21935 0.89831 0.93406 0.89307 0.93486 1.86685 1.48834 1.78220 1.21321 1.21841 0.93383 0.94047 0.93620 0.89374 1.21781 1.01199 0.95105 1.01392 0.93777 0.93453 0.93103 0.95381 0.97123 0.92805 0.92144 0.92058 0.92769 0.91561 0.91037 0.92699 0.79685 0.92066 0.93465 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.38 37.16 0.35 -2.02 16 2 C 0.08 1.60 2.24 -67.71 -0.15 1.45 16 3 H 0.08 1.62 5.20 -51.93 -0.27 1.35 16 4 C -0.05 -1.12 3.05 -27.88 -0.09 -1.20 16 5 C -0.52 -13.94 7.57 -34.44 -0.26 -14.20 16 6 H 0.08 2.25 5.90 -52.48 -0.31 1.94 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.17 16 9 Si 0.87 21.52 27.59 -169.99 -4.69 16.83 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.31 6.37 56.52 0.36 -5.95 16 13 N -0.51 -9.88 4.19 -218.76 -0.92 -10.80 16 14 C 0.05 0.96 3.98 -3.84 -0.02 0.95 16 15 C -0.11 -1.76 5.94 -26.65 -0.16 -1.92 16 16 C -0.15 -2.34 5.70 -26.61 -0.15 -2.49 16 17 C 0.11 1.85 3.24 -26.65 -0.09 1.76 16 18 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 19 O -0.55 -8.33 12.12 -35.23 -0.43 -8.76 16 20 C 0.08 1.52 1.72 -67.72 -0.12 1.41 16 21 H 0.09 2.01 5.30 -51.93 -0.27 1.74 16 22 C -0.14 -2.46 8.38 37.16 0.31 -2.15 16 23 H 0.04 0.76 7.61 -51.93 -0.40 0.37 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.67 4.30 -51.93 -0.22 0.44 16 27 H 0.01 0.25 7.82 -51.93 -0.41 -0.15 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.06 1.14 7.19 -51.93 -0.37 0.77 16 30 H 0.06 1.37 5.94 -51.93 -0.31 1.06 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.06 7.80 -51.92 -0.40 0.65 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.36 3.83 9.08 45.56 0.41 4.25 16 36 H 0.06 1.09 7.94 -51.93 -0.41 0.67 16 37 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 38 H 0.06 1.10 6.26 -51.93 -0.32 0.77 16 LS Contribution 280.73 15.07 4.23 4.23 Total: -1.00 -29.59 280.73 -6.92 -36.51 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.42 Total: 4.71 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -0.46 Total: -16.55 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: -0.14 Total: -36.97 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.43 Total: -8.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.69 Total: 16.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.59 -6.92 -36.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.249 kcal (2) G-P(sol) polarization free energy of solvation -29.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds