Wall clock time and date at job start Mon Mar 30 2020 03:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.47016 * 2 1 4 4 C 1.53001 * 109.46946 * 239.99684 * 2 1 3 5 5 C 1.50701 * 109.46947 * 168.85455 * 4 2 1 6 6 H 1.08003 * 119.99665 * 354.05777 * 5 4 2 7 7 C 1.37878 * 119.99840 * 174.04998 * 5 4 2 8 8 N 1.31512 * 119.99574 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99974 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.46981 * 89.99806 * 9 7 5 11 11 H 1.48501 * 109.46622 * 209.99469 * 9 7 5 12 12 H 1.48496 * 109.46873 * 329.99350 * 9 7 5 13 13 N 1.46898 * 109.47023 * 119.99425 * 2 1 3 14 14 C 1.46847 * 111.00158 * 86.85145 * 13 2 1 15 15 C 1.53031 * 109.52749 * 185.83636 * 14 13 2 16 16 C 1.53118 * 109.28190 * 300.82389 * 15 14 13 17 17 C 1.53113 * 109.16057 * 57.64958 * 16 15 14 18 18 H 1.09001 * 109.53658 * 182.38846 * 17 16 15 19 19 O 1.42904 * 109.50242 * 62.29027 * 17 16 15 20 20 C 1.46841 * 111.00148 * 211.06191 * 13 2 1 21 21 H 1.09001 * 109.46626 * 294.17933 * 20 13 2 22 22 C 1.53001 * 109.46583 * 54.14480 * 20 13 2 23 23 H 1.08994 * 109.47131 * 175.00343 * 1 2 3 24 24 H 1.09001 * 109.46927 * 55.00168 * 1 2 3 25 25 H 1.09004 * 109.46936 * 295.00289 * 1 2 3 26 26 H 1.08999 * 109.46965 * 288.85105 * 4 2 1 27 27 H 1.08992 * 109.47077 * 48.85753 * 4 2 1 28 28 H 0.97002 * 119.99896 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46046 * 305.85926 * 14 13 2 30 30 H 1.09002 * 109.46067 * 65.81901 * 14 13 2 31 31 H 1.08998 * 109.50426 * 180.87409 * 15 14 13 32 32 H 1.09009 * 109.50292 * 60.76456 * 15 14 13 33 33 H 1.09003 * 109.51985 * 297.75036 * 16 15 14 34 34 H 1.08996 * 109.57511 * 177.59118 * 16 15 14 35 35 H 0.96697 * 114.00158 * 60.19521 * 19 17 16 36 36 H 1.09000 * 109.46889 * 51.13805 * 22 20 13 37 37 H 1.08997 * 109.47657 * 171.14037 * 22 20 13 38 38 H 1.09000 * 109.47102 * 291.14386 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5218 -0.4879 -1.3943 6 1 4.0295 0.1910 -0.7252 7 6 4.2292 -1.1413 -2.3811 8 7 5.5221 -0.9372 -2.5080 9 14 3.3507 -2.3151 -3.5386 10 1 2.8655 -1.5681 -4.7268 11 1 4.2918 -3.3786 -3.9729 12 1 2.1968 -2.9318 -2.8363 13 7 2.0197 -0.6924 1.1995 14 6 2.1241 -2.1385 0.9667 15 6 2.4955 -2.8416 2.2742 16 6 3.8301 -2.2901 2.7834 17 6 3.7089 -0.7754 2.9716 18 1 4.6682 -0.3702 3.2936 19 8 2.7165 -0.4955 3.9610 20 6 3.3023 -0.1321 1.6438 21 1 4.0665 -0.3343 0.8933 22 6 3.1605 1.3796 1.8320 23 1 -0.3633 -1.0237 -0.0895 24 1 -0.3633 0.5894 -0.8418 25 1 -0.3633 0.4344 0.9314 26 1 1.8481 -1.7902 -1.1554 27 1 1.5237 -0.3351 -2.1280 28 1 6.0198 -1.3965 -3.2024 29 1 1.1673 -2.5187 0.6088 30 1 2.8938 -2.3313 0.2193 31 1 2.5882 -3.9132 2.0975 32 1 1.7194 -2.6606 3.0179 33 1 4.6140 -2.5053 2.0573 34 1 4.0783 -2.7569 3.7366 35 1 2.9095 -0.8736 4.8298 36 1 2.2944 1.5878 2.4603 37 1 4.0583 1.7722 2.3093 38 1 3.0275 1.8558 0.8606 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695904000.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:06 Heat of formation + Delta-G solvation = -72.494674 kcal Electronic energy + Delta-G solvation = -17558.707545 eV Core-core repulsion = 15013.994734 eV Total energy + Delta-G solvation = -2544.712812 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82965 -37.69573 -35.00414 -34.25185 -33.28186 -30.68200 -29.79376 -27.62989 -25.12111 -24.45977 -22.48637 -21.11560 -20.08044 -18.77069 -17.65458 -17.00680 -16.58671 -15.92569 -15.76061 -15.28535 -14.98770 -14.51187 -14.14028 -13.88388 -13.71132 -13.52767 -13.16489 -12.96868 -12.73401 -12.53893 -12.37134 -12.29508 -12.12296 -11.92147 -11.78660 -11.45818 -11.30348 -10.96736 -10.80332 -10.73676 -10.50193 -8.83882 -8.25824 -6.26721 1.30408 1.32579 1.42556 2.34099 3.04248 3.22649 3.56258 3.93472 3.94870 4.12529 4.24461 4.42637 4.47372 4.62331 4.68382 4.73885 4.76214 4.83004 4.91038 4.99010 5.01939 5.05139 5.11518 5.17358 5.19090 5.27837 5.29827 5.39301 5.48618 5.55249 5.62455 5.70881 6.31664 6.48755 6.51334 6.79200 7.13061 7.35633 8.88405 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.010498 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.113336 B = 2666.521265 C = 2836.280255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.076 3.924 3 H 0.065 0.935 4 C -0.042 4.042 5 C -0.509 4.509 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.948 5.948 9 Si 0.934 3.066 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.251 1.251 13 N -0.498 5.498 14 C 0.049 3.951 15 C -0.102 4.102 16 C -0.150 4.150 17 C 0.122 3.878 18 H 0.058 0.942 19 O -0.556 6.556 20 C 0.075 3.925 21 H 0.042 0.958 22 C -0.128 4.128 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.064 0.936 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.383 0.617 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -2.348 11.221 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.032 4.032 3 H 0.083 0.917 4 C -0.081 4.081 5 C -0.547 4.547 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.589 5.589 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.222 5.222 14 C -0.080 4.080 15 C -0.140 4.140 16 C -0.187 4.187 17 C 0.063 3.937 18 H 0.076 0.924 19 O -0.362 6.362 20 C -0.034 4.034 21 H 0.060 0.940 22 C -0.186 4.186 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.041 0.959 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.153 -2.005 11.001 13.274 hybrid contribution 1.198 -0.850 -1.367 2.006 sum -5.955 -2.855 9.634 11.680 Atomic orbital electron populations 1.21683 0.93857 1.01298 1.01453 1.21761 0.95400 0.97736 0.88337 0.91666 1.20327 0.94945 0.97179 0.95627 1.21455 0.93181 1.25163 1.14881 0.93263 1.25803 0.95233 0.98467 0.99007 1.70047 1.08590 1.45211 1.35047 0.85900 0.79159 0.79328 0.79725 1.19815 1.21408 1.17445 1.62395 1.26188 1.02602 1.31003 1.22126 0.99811 0.89001 0.97013 1.21441 0.97340 0.98571 0.96652 1.22248 0.97931 0.96498 1.02060 1.21697 0.90304 0.93627 0.88119 0.92416 1.86612 1.48440 1.78632 1.22513 1.21785 0.91937 0.95190 0.94506 0.93981 1.21690 1.02042 0.94273 1.00564 0.93304 0.92312 0.91899 0.95331 0.97214 0.92876 0.91727 0.95937 0.91207 0.90448 0.93360 0.89076 0.76941 0.91443 0.92172 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.38 71.98 0.68 -3.46 16 2 C 0.08 3.07 2.24 44.92 0.10 3.17 16 3 H 0.07 2.78 5.20 -2.39 -0.01 2.77 16 4 C -0.04 -1.99 3.05 29.85 0.09 -1.90 16 5 C -0.51 -28.29 7.57 25.60 0.19 -28.09 16 6 H 0.05 2.98 5.90 -2.91 -0.02 2.97 16 7 C 0.01 0.67 5.47 84.66 0.46 1.13 16 8 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 9 Si 0.93 44.69 27.59 68.60 1.89 46.58 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -11.28 6.37 99.48 0.63 -10.64 16 13 N -0.50 -19.04 4.19 -846.03 -3.55 -22.59 16 14 C 0.05 1.84 3.98 86.32 0.34 2.18 16 15 C -0.10 -3.07 5.94 30.64 0.18 -2.88 16 16 C -0.15 -4.30 5.70 30.67 0.17 -4.13 16 17 C 0.12 3.74 3.24 30.65 0.10 3.84 16 18 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 19 O -0.56 -15.12 12.12 -148.98 -1.81 -16.93 16 20 C 0.07 2.87 1.72 44.94 0.08 2.95 16 21 H 0.04 2.03 5.30 -2.39 -0.01 2.02 16 22 C -0.13 -4.58 8.38 71.98 0.60 -3.98 16 23 H 0.05 1.56 7.61 -2.39 -0.02 1.54 16 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.03 1.34 4.30 -2.39 -0.01 1.33 16 27 H 0.01 0.45 7.82 -2.39 -0.02 0.43 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.06 2.34 7.19 -2.39 -0.02 2.32 16 30 H 0.02 1.02 5.94 -2.39 -0.01 1.01 16 31 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 2.19 7.80 -2.38 -0.02 2.17 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.38 6.59 9.08 -74.06 -0.67 5.92 16 36 H 0.07 2.31 7.94 -2.39 -0.02 2.29 16 37 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 38 H 0.04 1.55 6.26 -2.39 -0.01 1.54 16 Total: -1.00 -64.68 280.73 0.14 -64.54 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.30 Total: 17.90 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 3.00 Total: -31.18 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -3.25 Total: -80.92 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.81 Total: -16.93 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.89 Total: 46.58 kcal Total: -64.68 0.14 -64.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695904000.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.952 kcal (2) G-P(sol) polarization free energy of solvation -64.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds