Wall clock time and date at job start Mon Mar 30 2020 04:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47355 * 2 1 4 4 C 1.52996 * 109.47159 * 239.99504 * 2 1 3 5 5 C 1.50701 * 109.47124 * 175.00250 * 4 2 1 6 6 H 1.08007 * 119.99818 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00149 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99851 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99896 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47272 * 89.99691 * 9 7 5 11 11 H 1.48504 * 109.47173 * 209.99856 * 9 7 5 12 12 H 1.48502 * 109.47235 * 329.99675 * 9 7 5 13 13 N 1.46903 * 109.46772 * 119.99589 * 2 1 3 14 14 C 1.46896 * 111.00025 * 294.99724 * 13 2 1 15 15 C 1.52997 * 109.47447 * 286.69502 * 14 13 2 16 16 C 1.53007 * 109.47089 * 185.32954 * 15 14 13 17 17 O 1.42901 * 109.46756 * 180.02562 * 16 15 14 18 18 C 1.46897 * 110.99881 * 58.95497 * 13 2 1 19 19 C 1.52998 * 117.49580 * 245.38849 * 18 13 2 20 20 C 1.53000 * 60.00146 * 252.51402 * 19 18 13 21 21 H 1.09007 * 109.46922 * 60.00489 * 1 2 3 22 22 H 1.09004 * 109.47135 * 300.00980 * 1 2 3 23 23 H 1.08995 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47317 * 295.00000 * 4 2 1 25 25 H 1.09000 * 109.47215 * 55.00637 * 4 2 1 26 26 H 0.97002 * 119.99662 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.46927 * 46.69737 * 14 13 2 28 28 H 1.09007 * 109.47335 * 166.69204 * 14 13 2 29 29 H 1.09000 * 109.47190 * 305.33183 * 15 14 13 30 30 H 1.09001 * 109.47172 * 65.33605 * 15 14 13 31 31 H 1.09000 * 109.47292 * 300.00167 * 16 15 14 32 32 H 1.08999 * 109.46698 * 60.00820 * 16 15 14 33 33 H 0.96704 * 113.99521 * 180.02562 * 17 16 15 34 34 H 1.08994 * 115.54998 * 31.09865 * 18 13 2 35 35 H 1.08999 * 117.50450 * 0.02562 * 19 18 13 36 36 H 1.09008 * 117.49801 * 145.02154 * 19 18 13 37 37 H 1.09005 * 117.49895 * 252.51062 * 20 19 18 38 38 H 1.08998 * 117.50013 * 107.49208 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5394 7 6 4.2305 -1.1938 -2.3576 8 7 5.5411 -1.1005 -2.4132 9 14 3.3016 -2.1090 -3.6951 10 1 2.9409 -1.1641 -4.7825 11 1 4.1600 -3.1898 -4.2430 12 1 2.0654 -2.7006 -3.1231 13 7 2.0196 -0.6924 1.1995 14 6 1.6487 0.0393 2.4180 15 6 2.5124 1.2962 2.5411 16 6 2.2200 1.9874 3.8745 17 8 3.0264 3.1616 3.9891 18 6 1.5282 -2.0760 1.2461 19 6 0.5696 -2.4474 2.3792 20 6 2.0114 -2.9588 2.3985 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.7517 -1.7715 -1.2054 25 1 1.6055 -0.2618 -2.1369 26 1 6.0256 -1.5080 -3.1482 27 1 0.5979 0.3243 2.3650 28 1 1.8087 -0.5982 3.2877 29 1 3.5656 1.0188 2.4989 30 1 2.2827 1.9766 1.7212 31 1 1.1668 2.2648 3.9167 32 1 2.4498 1.3070 4.6944 33 1 2.8933 3.6512 4.8123 34 1 1.3725 -2.5524 0.2782 35 1 0.3031 -1.6651 3.0899 36 1 -0.2173 -3.1683 2.1568 37 1 2.1733 -4.0162 2.1889 38 1 2.6939 -2.5130 3.1221 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695905389.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:50 Heat of formation + Delta-G solvation = -45.576687 kcal Electronic energy + Delta-G solvation = -16622.884930 eV Core-core repulsion = 14079.339370 eV Total energy + Delta-G solvation = -2543.545560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.49257 -37.90196 -36.28477 -34.77702 -33.61525 -30.68836 -29.35405 -26.17358 -24.55701 -23.24836 -22.70549 -22.39146 -19.58239 -18.76591 -18.16724 -17.44310 -16.94326 -16.49424 -16.16674 -15.17750 -14.72621 -14.60986 -14.40352 -14.27476 -13.76022 -13.37490 -13.25506 -13.13158 -12.67555 -12.46608 -12.34361 -12.18137 -11.98271 -11.80486 -11.61153 -11.52842 -11.19325 -11.09984 -10.98322 -10.82837 -10.66277 -8.70558 -8.16700 -6.15735 1.36260 1.38051 1.48862 2.41929 2.82360 3.12850 3.19059 3.56386 3.92825 4.02535 4.09198 4.19690 4.31908 4.33266 4.43158 4.45775 4.54046 4.56692 4.65320 4.72177 4.82144 4.87960 5.04694 5.11292 5.12839 5.16152 5.24426 5.30489 5.33759 5.38261 5.58895 5.75897 6.38905 6.45259 6.55951 6.92621 6.96009 7.44562 9.01124 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.008267 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.600027 B = 3386.175392 C = 3914.242626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 H 0.058 0.942 4 C -0.005 4.005 5 C -0.489 4.489 6 H 0.031 0.969 7 C -0.005 4.005 8 N -0.959 5.959 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.247 1.247 13 N -0.509 5.509 14 C 0.059 3.941 15 C -0.116 4.116 16 C 0.085 3.915 17 O -0.600 6.600 18 C 0.015 3.985 19 C -0.196 4.196 20 C -0.181 4.181 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.398 0.602 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.161 0.962 12.730 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 H 0.076 0.924 4 C -0.043 4.043 5 C -0.527 4.527 6 H 0.049 0.951 7 C -0.199 4.199 8 N -0.602 5.602 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.171 1.171 13 N -0.230 5.230 14 C -0.068 4.068 15 C -0.154 4.154 16 C 0.007 3.993 17 O -0.408 6.408 18 C -0.095 4.095 19 C -0.235 4.235 20 C -0.219 4.219 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.248 0.752 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.295 0.726 12.014 17.934 hybrid contribution -0.400 -0.158 -0.369 0.567 sum -13.695 0.568 11.645 17.986 Atomic orbital electron populations 1.22403 0.96026 1.02341 1.02325 1.21485 0.92614 0.96910 0.89929 0.92389 1.19676 0.94511 0.96107 0.93983 1.21286 0.92072 1.32359 1.07024 0.95089 1.25973 0.95511 0.97634 1.00805 1.70099 1.08553 1.47995 1.33565 0.85733 0.79276 0.78636 0.79358 1.19534 1.21585 1.17074 1.61711 1.58673 1.00606 1.01977 1.22099 0.97412 0.94226 0.93091 1.21451 1.00198 0.96463 0.97335 1.22094 0.94351 0.86437 0.96370 1.86485 1.67300 1.40833 1.46213 1.22511 1.02108 0.90410 0.94433 1.23615 0.92944 1.04282 1.02619 1.23063 0.97525 0.99632 1.01645 0.91959 0.91415 0.92149 0.95950 0.96342 0.93105 0.92497 0.89725 0.93872 0.93306 0.91613 0.92097 0.75246 0.87993 0.87374 0.87755 0.88333 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 8.68 71.98 0.62 -4.47 16 2 C 0.10 3.85 2.19 44.91 0.10 3.95 16 3 H 0.06 2.47 6.71 -2.39 -0.02 2.45 16 4 C -0.01 -0.25 3.40 29.85 0.10 -0.15 16 5 C -0.49 -28.98 9.39 25.60 0.24 -28.74 16 6 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 7 C 0.00 -0.28 5.47 84.66 0.46 0.18 16 8 N -0.96 -62.84 13.96 21.45 0.30 -62.54 16 9 Si 0.95 45.76 27.47 68.60 1.88 47.64 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 12 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 13 N -0.51 -18.87 4.37 -845.91 -3.69 -22.56 16 14 C 0.06 1.69 3.49 86.30 0.30 1.99 16 15 C -0.12 -3.65 5.56 30.60 0.17 -3.48 16 16 C 0.09 1.93 7.05 71.98 0.51 2.44 16 17 O -0.60 -14.96 13.66 -148.98 -2.04 -16.99 16 18 C 0.01 0.49 4.38 44.92 0.20 0.69 16 19 C -0.20 -4.67 9.55 30.59 0.29 -4.38 16 20 C -0.18 -5.17 9.93 30.60 0.30 -4.87 16 21 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 22 H 0.07 1.70 6.28 -2.38 -0.01 1.68 16 23 H 0.06 1.71 7.15 -2.39 -0.02 1.69 16 24 H 0.02 1.04 5.04 -2.39 -0.01 1.03 16 25 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 26 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 27 H 0.06 1.40 5.74 -2.39 -0.01 1.38 16 28 H 0.08 2.16 5.71 -2.38 -0.01 2.14 16 29 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.70 6.94 -2.39 -0.02 1.69 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.40 5.27 9.12 -74.05 -0.68 4.60 16 34 H 0.10 3.78 5.95 -2.39 -0.01 3.77 16 35 H 0.11 2.25 5.99 -2.39 -0.01 2.24 16 36 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 38 H 0.09 2.58 7.53 -2.39 -0.02 2.57 16 Total: -1.00 -73.00 294.15 0.06 -72.94 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.31 Total: 18.35 kcal Atomic # 6 Polarization: -40.13 SS G_CDS: 3.30 Total: -36.83 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -3.40 Total: -85.11 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -2.04 Total: -16.99 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -73.00 0.06 -72.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695905389.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.363 kcal (2) G-P(sol) polarization free energy of solvation -73.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds