Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.50698 * 109.47310 * 240.00021 * 2 1 3 5 5 H 1.07995 * 119.99903 * 239.99527 * 4 2 1 6 6 C 1.37876 * 119.99967 * 60.00119 * 4 2 1 7 7 N 1.31519 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46866 * 59.99797 * 8 6 4 10 10 H 1.48499 * 109.47304 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47076 * 300.00329 * 8 6 4 12 12 N 1.46897 * 109.47027 * 120.00046 * 2 1 3 13 13 C 1.46906 * 111.00100 * 275.00129 * 12 2 1 14 14 H 1.09002 * 110.53874 * 31.73737 * 13 12 2 15 15 C 1.54813 * 110.48751 * 154.35578 * 13 12 2 16 16 H 1.08997 * 110.90815 * 257.75624 * 15 13 12 17 17 C 1.52999 * 110.90706 * 21.32850 * 15 13 12 18 18 C 1.55001 * 102.08754 * 139.55876 * 15 13 12 19 19 H 1.08996 * 110.61837 * 81.47909 * 18 15 13 20 20 C 1.53003 * 110.61143 * 204.47657 * 18 15 13 21 21 O 1.44382 * 103.49121 * 322.97293 * 18 15 13 22 22 C 1.43743 * 106.97165 * 40.06355 * 21 18 15 23 23 H 1.09005 * 109.87509 * 92.90856 * 22 21 18 24 24 C 1.52995 * 109.87801 * 214.05502 * 22 21 18 25 25 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47386 * 299.99880 * 1 2 3 27 27 H 1.09001 * 109.47269 * 60.00060 * 1 2 3 28 28 H 0.97000 * 120.00464 * 180.02562 * 7 6 4 29 29 H 1.00899 * 111.00116 * 151.05159 * 12 2 1 30 30 H 1.08999 * 109.47488 * 59.99497 * 17 15 13 31 31 H 1.09003 * 109.47246 * 179.97438 * 17 15 13 32 32 H 1.09007 * 109.46752 * 299.99522 * 17 15 13 33 33 H 1.09000 * 109.47539 * 60.00359 * 20 18 15 34 34 H 1.09004 * 109.46930 * 180.02562 * 20 18 15 35 35 H 1.09005 * 109.47232 * 299.99694 * 20 18 15 36 36 H 1.08998 * 109.47458 * 171.55759 * 24 22 21 37 37 H 1.09003 * 109.47384 * 291.56407 * 24 22 21 38 38 H 1.09003 * 109.47125 * 51.56057 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8270 -0.4197 -5.2204 11 1 3.8075 -1.1188 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.2987 0.9771 2.2777 15 6 1.9614 -0.5642 3.6747 16 1 0.9580 -0.4736 4.0905 17 6 2.3359 -2.0341 3.4744 18 6 2.9997 0.1543 4.5736 19 1 2.5762 1.0654 4.9963 20 6 3.4895 -0.7789 5.6827 21 8 4.0744 0.4685 3.6620 22 6 3.4686 0.8907 2.4288 23 1 3.3583 1.9752 2.4223 24 6 4.3313 0.4457 1.2462 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7082 1.1609 -3.4844 29 1 2.9173 -1.1204 1.0288 30 1 3.3642 -2.1020 3.1193 31 1 2.2432 -2.5651 4.4218 32 1 1.6674 -2.4824 2.7393 33 1 3.9559 -1.6581 5.2382 34 1 4.2172 -0.2556 6.3029 35 1 2.6440 -1.0878 6.2975 36 1 3.7970 0.6345 0.3152 37 1 5.2669 1.0050 1.2482 38 1 4.5448 -0.6197 1.3329 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701025347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -47.432544 kcal Electronic energy + Delta-G solvation = -17137.153915 eV Core-core repulsion = 14593.527878 eV Total energy + Delta-G solvation = -2543.626036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.90355 -35.80105 -33.32904 -32.85341 -30.43251 -28.75290 -27.34380 -26.34257 -25.05935 -23.02018 -20.58924 -19.69380 -19.09085 -17.03686 -16.15964 -15.16467 -14.84894 -14.64678 -14.08419 -13.91683 -13.17414 -12.97998 -12.50382 -12.37916 -11.90471 -11.83386 -11.72132 -11.42810 -11.29488 -11.05466 -10.86585 -10.67936 -10.51542 -10.27077 -10.20858 -10.11849 -10.07667 -9.80968 -9.28770 -8.84172 -8.48658 -7.23022 -6.05003 -4.11766 3.29705 3.34480 3.37221 4.11261 4.38141 4.92386 5.00974 5.20913 5.26157 5.34244 5.38730 5.53861 5.62905 5.73548 5.81614 5.86079 6.00642 6.07964 6.19442 6.21437 6.29452 6.42979 6.46351 6.60405 6.74862 6.84174 6.89127 7.13236 7.22891 7.33143 7.50600 7.76014 7.87218 8.25608 8.39176 8.65378 8.99444 9.54728 11.01023 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.007279 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.789695 B = 3845.561734 C = 3967.098626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.676 5.676 13 C 0.065 3.935 14 H 0.080 0.920 15 C -0.111 4.111 16 H 0.077 0.923 17 C -0.126 4.126 18 C 0.070 3.930 19 H 0.061 0.939 20 C -0.143 4.143 21 O -0.375 6.375 22 C 0.047 3.953 23 H 0.058 0.942 24 C -0.161 4.161 25 H 0.031 0.969 26 H 0.003 0.997 27 H 0.080 0.920 28 H 0.261 0.739 29 H 0.339 0.661 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.881 -1.317 11.507 11.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.020 0.980 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.310 5.310 13 C -0.048 4.048 14 H 0.099 0.901 15 C -0.130 4.130 16 H 0.096 0.904 17 C -0.183 4.183 18 C 0.013 3.987 19 H 0.079 0.921 20 C -0.200 4.200 21 O -0.295 6.295 22 C -0.012 4.012 23 H 0.076 0.924 24 C -0.218 4.218 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.162 0.838 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.405 -1.472 11.535 11.875 hybrid contribution 0.790 0.307 -1.145 1.424 sum 3.194 -1.165 10.390 10.932 Atomic orbital electron populations 1.21736 0.98046 0.99330 0.99241 1.19136 0.92451 0.92429 0.85648 0.97952 1.21195 1.31559 1.12554 0.90411 0.92328 1.24905 0.94991 0.94951 0.99002 1.69884 1.36450 1.22838 1.23590 0.86611 0.79109 0.79814 0.82172 1.20223 1.21337 1.20308 1.60818 1.33070 1.31605 1.05490 1.22904 0.94889 0.94196 0.92765 0.90145 1.22671 0.98482 0.96854 0.94994 0.90433 1.21522 1.02032 0.94178 1.00578 1.23110 0.87928 0.96589 0.91109 0.92135 1.21779 1.01299 0.99721 0.97182 1.88834 1.30113 1.87156 1.23375 1.23433 0.94640 0.98067 0.85061 0.92397 1.22127 0.99882 1.01511 0.98305 0.94988 0.97840 0.90163 0.92860 0.83849 0.93026 0.93989 0.90644 0.91416 0.92669 0.91544 0.88472 0.93020 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.18 37.16 0.34 -2.72 16 2 C 0.21 5.11 1.33 -68.87 -0.09 5.02 16 3 H 0.00 0.08 7.00 -51.93 -0.36 -0.29 16 4 C -0.52 -13.73 8.23 -34.44 -0.28 -14.02 16 5 H 0.06 1.54 7.62 -52.49 -0.40 1.14 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.90 11.32 55.43 0.63 -24.28 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.68 -13.86 4.38 -99.35 -0.44 -14.30 16 13 C 0.06 1.16 3.00 -66.18 -0.20 0.96 16 14 H 0.08 1.52 7.22 -51.93 -0.37 1.14 16 15 C -0.11 -1.68 3.51 -88.61 -0.31 -1.99 16 16 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.13 -1.86 7.12 37.16 0.26 -1.60 16 18 C 0.07 1.00 3.79 -25.67 -0.10 0.90 16 19 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -1.66 8.71 37.16 0.32 -1.34 16 21 O -0.38 -6.35 10.88 -35.23 -0.38 -6.74 16 22 C 0.05 0.83 4.05 -26.16 -0.11 0.72 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 C -0.16 -2.90 8.25 37.16 0.31 -2.60 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.00 0.06 7.51 -51.93 -0.39 -0.33 16 27 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.34 6.95 4.95 -39.29 -0.19 6.76 16 30 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 31 H 0.04 0.53 7.20 -51.93 -0.37 0.15 16 32 H 0.07 1.24 7.47 -51.93 -0.39 0.85 16 33 H 0.07 0.82 6.76 -51.93 -0.35 0.47 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 2.01 5.28 -51.93 -0.27 1.74 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.11 6.93 -51.93 -0.36 0.75 16 LS Contribution 287.17 15.07 4.33 4.33 Total: -1.00 -27.22 287.17 -7.12 -34.35 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.29 Total: 5.72 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 0.05 Total: -15.02 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.19 Total: -38.57 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.38 Total: -6.74 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.22 -7.12 -34.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701025347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.087 kcal (2) G-P(sol) polarization free energy of solvation -27.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds