Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46960 * 2 1 4 4 C 1.50698 * 109.47310 * 240.00021 * 2 1 3 5 5 H 1.07995 * 119.99903 * 239.99527 * 4 2 1 6 6 C 1.37876 * 119.99967 * 60.00119 * 4 2 1 7 7 N 1.31519 * 120.00324 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00329 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46866 * 59.99797 * 8 6 4 10 10 H 1.48499 * 109.47304 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47076 * 300.00329 * 8 6 4 12 12 N 1.46897 * 109.47027 * 120.00046 * 2 1 3 13 13 C 1.46906 * 111.00100 * 275.00129 * 12 2 1 14 14 H 1.09002 * 110.53874 * 31.73737 * 13 12 2 15 15 C 1.54813 * 110.48751 * 154.35578 * 13 12 2 16 16 H 1.08997 * 110.90815 * 257.75624 * 15 13 12 17 17 C 1.52999 * 110.90706 * 21.32850 * 15 13 12 18 18 C 1.55001 * 102.08754 * 139.55876 * 15 13 12 19 19 H 1.08996 * 110.61837 * 81.47909 * 18 15 13 20 20 C 1.53003 * 110.61143 * 204.47657 * 18 15 13 21 21 O 1.44382 * 103.49121 * 322.97293 * 18 15 13 22 22 C 1.43743 * 106.97165 * 40.06355 * 21 18 15 23 23 H 1.09005 * 109.87509 * 92.90856 * 22 21 18 24 24 C 1.52995 * 109.87801 * 214.05502 * 22 21 18 25 25 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47386 * 299.99880 * 1 2 3 27 27 H 1.09001 * 109.47269 * 60.00060 * 1 2 3 28 28 H 0.97000 * 120.00464 * 180.02562 * 7 6 4 29 29 H 1.00899 * 111.00116 * 151.05159 * 12 2 1 30 30 H 1.08999 * 109.47488 * 59.99497 * 17 15 13 31 31 H 1.09003 * 109.47246 * 179.97438 * 17 15 13 32 32 H 1.09007 * 109.46752 * 299.99522 * 17 15 13 33 33 H 1.09000 * 109.47539 * 60.00359 * 20 18 15 34 34 H 1.09004 * 109.46930 * 180.02562 * 20 18 15 35 35 H 1.09005 * 109.47232 * 299.99694 * 20 18 15 36 36 H 1.08998 * 109.47458 * 171.55759 * 24 22 21 37 37 H 1.09003 * 109.47384 * 291.56407 * 24 22 21 38 38 H 1.09003 * 109.47125 * 51.56057 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.8282 -2.5197 -4.0082 10 1 1.8270 -0.4197 -5.2204 11 1 3.8075 -1.1188 -4.0077 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 1 1.2987 0.9771 2.2777 15 6 1.9614 -0.5642 3.6747 16 1 0.9580 -0.4736 4.0905 17 6 2.3359 -2.0341 3.4744 18 6 2.9997 0.1543 4.5736 19 1 2.5762 1.0654 4.9963 20 6 3.4895 -0.7789 5.6827 21 8 4.0744 0.4685 3.6620 22 6 3.4686 0.8907 2.4288 23 1 3.3583 1.9752 2.4223 24 6 4.3313 0.4457 1.2462 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.7082 1.1609 -3.4844 29 1 2.9173 -1.1204 1.0288 30 1 3.3642 -2.1020 3.1193 31 1 2.2432 -2.5651 4.4218 32 1 1.6674 -2.4824 2.7393 33 1 3.9559 -1.6581 5.2382 34 1 4.2172 -0.2556 6.3029 35 1 2.6440 -1.0878 6.2975 36 1 3.7970 0.6345 0.3152 37 1 5.2669 1.0050 1.2482 38 1 4.5448 -0.6197 1.3329 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701025347.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -63.832671 kcal Electronic energy + Delta-G solvation = -17137.865077 eV Core-core repulsion = 14593.527878 eV Total energy + Delta-G solvation = -2544.337199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.25311 -37.48980 -34.78467 -34.47490 -32.17016 -29.94676 -28.96852 -27.86198 -26.99648 -24.28124 -22.33888 -21.05223 -20.56583 -18.74310 -17.77496 -16.79570 -16.37642 -16.07300 -15.71883 -15.32800 -14.82189 -14.49057 -13.99258 -13.63010 -13.43160 -13.17993 -13.09534 -12.87088 -12.84437 -12.69596 -12.65091 -12.24585 -12.22305 -12.14542 -11.73057 -11.66836 -11.46020 -11.32045 -10.83069 -10.61382 -10.49838 -8.93963 -8.11415 -6.24528 1.43216 1.44330 1.51638 2.42324 2.86076 3.17576 3.54066 3.74101 3.87349 4.01165 4.15894 4.23454 4.42718 4.46278 4.59187 4.70100 4.72825 4.85977 4.88157 4.92326 5.03587 5.09022 5.10759 5.19112 5.20730 5.31783 5.35353 5.39469 5.52029 5.63001 5.70215 5.89121 6.06144 6.25032 6.52435 6.80568 7.03309 7.45886 8.93803 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042883 B = 0.007279 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.789695 B = 3845.561734 C = 3967.098626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.219 3.781 3 H -0.025 1.025 4 C -0.531 4.531 5 H 0.057 0.943 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.956 3.044 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.669 5.669 13 C 0.058 3.942 14 H 0.069 0.931 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.120 4.120 18 C 0.068 3.932 19 H 0.073 0.927 20 C -0.139 4.139 21 O -0.385 6.385 22 C 0.052 3.948 23 H 0.058 0.942 24 C -0.154 4.154 25 H 0.026 0.974 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.262 0.738 29 H 0.339 0.661 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.345 -2.138 12.893 13.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H -0.007 1.007 4 C -0.570 4.570 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.302 5.302 13 C -0.053 4.053 14 H 0.087 0.913 15 C -0.125 4.125 16 H 0.110 0.890 17 C -0.177 4.177 18 C 0.010 3.990 19 H 0.091 0.909 20 C -0.196 4.196 21 O -0.305 6.305 22 C -0.008 4.008 23 H 0.075 0.925 24 C -0.211 4.211 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.161 0.839 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.874 -2.301 12.945 13.458 hybrid contribution 0.646 0.587 -1.505 1.740 sum 3.520 -1.714 11.440 12.091 Atomic orbital electron populations 1.21578 0.98175 0.98761 0.98846 1.18889 0.92229 0.91016 0.86744 1.00728 1.21493 1.31431 1.12519 0.91514 0.92499 1.25652 0.95215 0.95620 1.01810 1.70009 1.37449 1.24045 1.24098 0.85642 0.78741 0.78700 0.78721 1.19814 1.21137 1.19669 1.60764 1.33049 1.31685 1.04739 1.22990 0.94964 0.94202 0.93190 0.91285 1.22685 0.99786 0.96725 0.93305 0.89039 1.21457 1.00740 0.94045 1.01457 1.23354 0.86964 0.97603 0.91044 0.90943 1.21794 1.02429 0.98887 0.96451 1.88824 1.31204 1.87209 1.23251 1.23271 0.94106 0.97954 0.85434 0.92454 1.21986 1.00135 1.01745 0.97238 0.95435 0.96165 0.92584 0.92935 0.83888 0.94123 0.91187 0.92526 0.91884 0.91827 0.89179 0.91464 0.91799 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 9.18 71.98 0.66 -5.03 16 2 C 0.22 10.85 1.33 44.17 0.06 10.91 16 3 H -0.02 -1.35 7.00 -2.38 -0.02 -1.37 16 4 C -0.53 -28.46 8.23 25.60 0.21 -28.25 16 5 H 0.06 3.00 7.62 -2.91 -0.02 2.98 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.21 11.32 21.45 0.24 -51.96 16 8 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 N -0.67 -27.48 4.38 -468.24 -2.05 -29.54 16 13 C 0.06 2.06 3.00 45.90 0.14 2.20 16 14 H 0.07 2.59 7.22 -2.39 -0.02 2.57 16 15 C -0.11 -2.98 3.51 -9.49 -0.03 -3.02 16 16 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.12 -3.30 7.12 71.98 0.51 -2.78 16 18 C 0.07 1.74 3.79 31.28 0.12 1.85 16 19 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 20 C -0.14 -2.74 8.71 71.98 0.63 -2.12 16 21 O -0.38 -12.35 10.88 -148.98 -1.62 -13.97 16 22 C 0.05 1.79 4.05 30.96 0.13 1.91 16 23 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 24 C -0.15 -5.54 8.25 71.98 0.59 -4.95 16 25 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.02 0.88 7.51 -2.39 -0.02 0.86 16 27 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.34 13.95 4.95 -89.69 -0.44 13.51 16 30 H 0.04 1.20 7.94 -2.39 -0.02 1.18 16 31 H 0.07 1.53 7.20 -2.39 -0.02 1.51 16 32 H 0.06 1.78 7.47 -2.38 -0.02 1.76 16 33 H 0.06 1.32 6.76 -2.39 -0.02 1.31 16 34 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.07 2.85 5.28 -2.39 -0.01 2.84 16 37 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.23 6.93 -2.39 -0.02 2.21 16 Total: -1.00 -57.73 287.17 2.64 -55.09 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.58 Total: 23.17 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.46 Total: -27.94 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.81 Total: -81.50 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.62 Total: -13.97 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -57.73 2.64 -55.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701025347.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.745 kcal (2) G-P(sol) polarization free energy of solvation -57.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds