Wall clock time and date at job start Mon Mar 30 2020 03:29:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09000 * 109.87132 * 2 1
4 4 O 1.43751 * 110.00672 * 121.08433 * 2 1 3
5 5 C 1.44420 * 106.99903 * 145.98135 * 4 2 1
6 6 H 1.08998 * 110.59618 * 78.47947 * 5 4 2
7 7 C 1.53001 * 110.64942 * 201.48285 * 5 4 2
8 8 C 1.54992 * 103.47487 * 319.99266 * 5 4 2
9 9 H 1.09001 * 110.90968 * 278.76133 * 8 5 4
10 10 C 1.52999 * 110.90694 * 155.18956 * 8 5 4
11 11 C 1.54100 * 109.88270 * 238.99606 * 2 1 3
12 12 H 1.08999 * 110.48108 * 357.06747 * 11 2 1
13 13 C 1.52993 * 110.48943 * 119.71764 * 11 2 1
14 14 N 1.46495 * 109.47227 * 290.61166 * 13 11 2
15 15 C 1.46500 * 119.99934 * 95.91739 * 14 13 11
16 16 C 1.36938 * 120.00377 * 275.91739 * 14 13 11
17 17 H 1.07996 * 119.99799 * 353.04594 * 16 14 13
18 18 C 1.38805 * 120.00124 * 173.03870 * 16 14 13
19 19 N 1.31615 * 120.00468 * 5.34236 * 18 16 14
20 20 Si 1.86809 * 120.00043 * 185.34162 * 18 16 14
21 21 H 1.48495 * 109.46856 * 60.00109 * 20 18 16
22 22 H 1.48500 * 109.47114 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.46737 * 300.00110 * 20 18 16
24 24 H 1.09006 * 109.47171 * 181.00638 * 1 2 3
25 25 H 1.09001 * 109.47555 * 301.00530 * 1 2 3
26 26 H 1.08995 * 109.47361 * 61.00666 * 1 2 3
27 27 H 1.09000 * 109.47150 * 174.07074 * 7 5 4
28 28 H 1.08998 * 109.47448 * 294.07240 * 7 5 4
29 29 H 1.09006 * 109.46848 * 54.07397 * 7 5 4
30 30 H 1.08996 * 109.47264 * 304.33131 * 10 8 5
31 31 H 1.09002 * 109.47283 * 184.32709 * 10 8 5
32 32 H 1.09008 * 109.46729 * 64.33242 * 10 8 5
33 33 H 1.08996 * 109.47261 * 50.61454 * 13 11 2
34 34 H 1.09005 * 109.46849 * 170.61637 * 13 11 2
35 35 H 1.09003 * 109.46988 * 4.30916 * 15 14 13
36 36 H 1.09004 * 109.46902 * 124.30513 * 15 14 13
37 37 H 1.08997 * 109.47550 * 244.30605 * 15 14 13
38 38 H 0.96998 * 120.00894 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9004 1.0251 0.0000
4 8 2.0217 -0.6974 1.1568
5 6 3.2418 -1.3618 0.7622
6 1 4.0711 -0.6550 0.7329
7 6 3.5546 -2.5225 1.7087
8 6 2.9227 -1.8882 -0.6602
9 1 2.3593 -2.8201 -0.6128
10 6 4.2045 -2.0688 -1.4758
11 6 2.0540 -0.7464 -1.2421
12 1 1.2247 -1.1546 -1.8199
13 6 2.9042 0.1854 -2.1078
14 7 2.0442 1.1976 -2.7259
15 6 1.8978 2.5147 -2.1014
16 6 1.3773 0.9126 -3.8874
17 1 1.5706 -0.0137 -4.4078
18 6 0.4526 1.8144 -4.3959
19 7 0.2928 2.9876 -3.8213
20 14 -0.5651 1.3627 -5.8959
21 1 -1.3708 0.1508 -5.6008
22 1 -1.4718 2.4885 -6.2362
23 1 0.3379 1.0897 -7.0428
24 1 -0.3634 -1.0276 0.0181
25 1 -0.3634 0.5294 0.8808
26 1 -0.3634 0.4981 -0.8988
27 1 4.4171 -3.0740 1.3347
28 1 3.7759 -2.1319 2.7020
29 1 2.6934 -3.1885 1.7638
30 1 4.7561 -1.1290 -1.4987
31 1 3.9490 -2.3652 -2.4932
32 1 4.8215 -2.8412 -1.0165
33 1 3.6535 0.6757 -1.4863
34 1 3.4005 -0.3941 -2.8862
35 1 2.5570 2.5818 -1.2359
36 1 2.1628 3.2894 -2.8209
37 1 0.8646 2.6529 -1.7828
38 1 -0.3531 3.6180 -4.1768
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701364088.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:35
Heat of formation + Delta-G solvation = -30.197245 kcal
Electronic energy + Delta-G solvation = -17177.314850 eV
Core-core repulsion = 14634.436193 eV
Total energy + Delta-G solvation = -2542.878657 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-39.70553 -35.64897 -33.61617 -32.48522 -30.56994 -29.06601 -27.11513 -25.90746
-24.88104 -22.51886 -21.00721 -20.80281 -18.95355 -16.74328 -15.71968 -15.34038
-14.98710 -14.48694 -13.92868 -13.57474 -13.26801 -12.74998 -12.63696 -12.41488
-12.10448 -11.97370 -11.76395 -11.50926 -11.36364 -11.14701 -10.95473 -10.72291
-10.52155 -10.39699 -10.21144 -10.06231 -9.83357 -9.70877 -9.60406 -9.10567
-8.48515 -6.84452 -5.60355 -3.02727 3.40608 3.46063 3.46691 4.21692
4.51953 4.92024 4.97766 5.25668 5.38631 5.45646 5.56164 5.59639
5.67713 5.71457 5.82173 5.87840 5.96477 6.05344 6.13160 6.16710
6.22311 6.31071 6.35985 6.44419 6.60240 6.65610 6.73631 6.80508
6.82475 7.00970 7.47805 7.68594 7.74749 7.98214 8.42379 9.31698
9.95042 10.38548 11.39050
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037036 B = 0.007988 C = 0.007542
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.842892 B = 3504.489971 C = 3711.619850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.086 3.914
3 H 0.069 0.931
4 O -0.384 6.384
5 C 0.076 3.924
6 H 0.064 0.936
7 C -0.143 4.143
8 C -0.118 4.118
9 H 0.075 0.925
10 C -0.140 4.140
11 C -0.134 4.134
12 H 0.084 0.916
13 C 0.162 3.838
14 N -0.611 5.611
15 C 0.170 3.830
16 C -0.242 4.242
17 H 0.072 0.928
18 C -0.005 4.005
19 N -0.919 5.919
20 Si 0.905 3.095
21 H -0.286 1.286
22 H -0.291 1.291
23 H -0.286 1.286
24 H 0.049 0.951
25 H 0.048 0.952
26 H 0.081 0.919
27 H 0.066 0.934
28 H 0.057 0.943
29 H 0.060 0.940
30 H 0.061 0.939
31 H 0.060 0.940
32 H 0.048 0.952
33 H 0.038 0.962
34 H 0.047 0.953
35 H -0.012 1.012
36 H 0.044 0.956
37 H 0.040 0.960
38 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.671 -8.415 7.542 12.643
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.029 3.971
3 H 0.087 0.913
4 O -0.304 6.304
5 C 0.019 3.981
6 H 0.082 0.918
7 C -0.200 4.200
8 C -0.138 4.138
9 H 0.093 0.907
10 C -0.198 4.198
11 C -0.155 4.155
12 H 0.102 0.898
13 C 0.035 3.965
14 N -0.334 5.334
15 C 0.026 3.974
16 C -0.371 4.371
17 H 0.090 0.910
18 C -0.200 4.200
19 N -0.567 5.567
20 Si 0.735 3.265
21 H -0.213 1.213
22 H -0.217 1.217
23 H -0.212 1.212
24 H 0.068 0.932
25 H 0.067 0.933
26 H 0.100 0.900
27 H 0.085 0.915
28 H 0.076 0.924
29 H 0.079 0.921
30 H 0.080 0.920
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.057 0.943
34 H 0.065 0.935
35 H 0.006 0.994
36 H 0.062 0.938
37 H 0.058 0.942
38 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges 5.451 -8.231 7.676 12.505
hybrid contribution -0.657 -0.191 -1.026 1.233
sum 4.794 -8.423 6.649 11.753
Atomic orbital electron populations
1.21848 0.94140 1.01465 1.02471 1.22701 0.94829 0.95675 0.83859
0.91296 1.88807 1.39237 1.67939 1.34441 1.23073 0.88253 0.93466
0.93333 0.91802 1.21756 1.01628 0.97399 0.99206 1.22739 0.97118
0.99097 0.94806 0.90692 1.21770 0.96492 1.01547 0.99949 1.23364
0.99732 0.95458 0.96988 0.89796 1.20901 0.91450 0.90105 0.94086
1.44058 1.53525 1.10121 1.25694 1.21070 0.97604 0.86083 0.92599
1.19228 1.15691 1.03156 0.99058 0.91037 1.24849 0.99415 0.96524
0.99261 1.70198 1.37874 1.06843 1.41740 0.86318 0.80304 0.77227
0.82626 1.21257 1.21664 1.21243 0.93173 0.93274 0.89996 0.91524
0.92398 0.92118 0.91978 0.92119 0.93310 0.94346 0.93472 0.99367
0.93799 0.94178 0.93965
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.63 9.37 37.15 0.35 -2.28 16
2 C 0.09 1.62 3.50 -26.16 -0.09 1.53 16
3 H 0.07 1.41 5.92 -51.93 -0.31 1.10 16
4 O -0.38 -6.86 10.90 -35.23 -0.38 -7.24 16
5 C 0.08 1.12 3.43 -25.68 -0.09 1.04 16
6 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16
7 C -0.14 -1.68 9.66 37.16 0.36 -1.32 16
8 C -0.12 -1.76 3.09 -88.61 -0.27 -2.03 16
9 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16
10 C -0.14 -1.82 7.99 37.16 0.30 -1.52 16
11 C -0.13 -2.46 2.82 -89.09 -0.25 -2.71 16
12 H 0.08 1.71 7.70 -51.93 -0.40 1.31 16
13 C 0.16 3.27 3.70 -4.05 -0.01 3.25 16
14 N -0.61 -15.12 2.84 -181.13 -0.51 -15.63 16
15 C 0.17 4.27 7.99 59.85 0.48 4.75 16
16 C -0.24 -6.56 9.81 -15.06 -0.15 -6.71 16
17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16
18 C 0.00 -0.13 5.46 -17.43 -0.10 -0.22 16
19 N -0.92 -26.57 9.45 55.49 0.52 -26.04 16
20 Si 0.90 21.96 29.56 -169.99 -5.02 16.93 16
21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16
25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
26 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16
27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16
28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16
31 H 0.06 0.80 7.72 -51.93 -0.40 0.40 16
32 H 0.05 0.52 8.13 -51.92 -0.42 0.10 16
33 H 0.04 0.74 7.38 -51.93 -0.38 0.35 16
34 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16
35 H -0.01 -0.27 6.93 -51.93 -0.36 -0.63 16
36 H 0.04 1.20 7.04 -51.93 -0.37 0.83 16
37 H 0.04 1.08 7.05 -51.93 -0.37 0.71 16
38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
LS Contribution 292.95 15.07 4.41 4.41
Total: -1.00 -28.85 292.95 -7.07 -35.92
By element:
Atomic # 1 Polarization: 4.48 SS G_CDS: -6.60 Total: -2.12 kcal
Atomic # 6 Polarization: -6.75 SS G_CDS: 0.52 Total: -6.23 kcal
Atomic # 7 Polarization: -41.69 SS G_CDS: 0.01 Total: -41.67 kcal
Atomic # 8 Polarization: -6.86 SS G_CDS: -0.38 Total: -7.24 kcal
Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -28.85 -7.07 -35.92 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701364088.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.721 kcal
(2) G-P(sol) polarization free energy of solvation -28.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds