Wall clock time and date at job start Mon Mar 30 2020 03:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.87132 * 2 1 4 4 O 1.43751 * 110.00672 * 121.08433 * 2 1 3 5 5 C 1.44420 * 106.99903 * 145.98135 * 4 2 1 6 6 H 1.08998 * 110.59618 * 78.47947 * 5 4 2 7 7 C 1.53001 * 110.64942 * 201.48285 * 5 4 2 8 8 C 1.54992 * 103.47487 * 319.99266 * 5 4 2 9 9 H 1.09001 * 110.90968 * 278.76133 * 8 5 4 10 10 C 1.52999 * 110.90694 * 155.18956 * 8 5 4 11 11 C 1.54100 * 109.88270 * 238.99606 * 2 1 3 12 12 H 1.08999 * 110.48108 * 357.06747 * 11 2 1 13 13 C 1.52993 * 110.48943 * 119.71764 * 11 2 1 14 14 N 1.46495 * 109.47227 * 290.61166 * 13 11 2 15 15 C 1.46500 * 119.99934 * 95.91739 * 14 13 11 16 16 C 1.36938 * 120.00377 * 275.91739 * 14 13 11 17 17 H 1.07996 * 119.99799 * 353.04594 * 16 14 13 18 18 C 1.38805 * 120.00124 * 173.03870 * 16 14 13 19 19 N 1.31615 * 120.00468 * 5.34236 * 18 16 14 20 20 Si 1.86809 * 120.00043 * 185.34162 * 18 16 14 21 21 H 1.48495 * 109.46856 * 60.00109 * 20 18 16 22 22 H 1.48500 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46737 * 300.00110 * 20 18 16 24 24 H 1.09006 * 109.47171 * 181.00638 * 1 2 3 25 25 H 1.09001 * 109.47555 * 301.00530 * 1 2 3 26 26 H 1.08995 * 109.47361 * 61.00666 * 1 2 3 27 27 H 1.09000 * 109.47150 * 174.07074 * 7 5 4 28 28 H 1.08998 * 109.47448 * 294.07240 * 7 5 4 29 29 H 1.09006 * 109.46848 * 54.07397 * 7 5 4 30 30 H 1.08996 * 109.47264 * 304.33131 * 10 8 5 31 31 H 1.09002 * 109.47283 * 184.32709 * 10 8 5 32 32 H 1.09008 * 109.46729 * 64.33242 * 10 8 5 33 33 H 1.08996 * 109.47261 * 50.61454 * 13 11 2 34 34 H 1.09005 * 109.46849 * 170.61637 * 13 11 2 35 35 H 1.09003 * 109.46988 * 4.30916 * 15 14 13 36 36 H 1.09004 * 109.46902 * 124.30513 * 15 14 13 37 37 H 1.08997 * 109.47550 * 244.30605 * 15 14 13 38 38 H 0.96998 * 120.00894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6974 1.1568 5 6 3.2418 -1.3618 0.7622 6 1 4.0711 -0.6550 0.7329 7 6 3.5546 -2.5225 1.7087 8 6 2.9227 -1.8882 -0.6602 9 1 2.3593 -2.8201 -0.6128 10 6 4.2045 -2.0688 -1.4758 11 6 2.0540 -0.7464 -1.2421 12 1 1.2247 -1.1546 -1.8199 13 6 2.9042 0.1854 -2.1078 14 7 2.0442 1.1976 -2.7259 15 6 1.8978 2.5147 -2.1014 16 6 1.3773 0.9126 -3.8874 17 1 1.5706 -0.0137 -4.4078 18 6 0.4526 1.8144 -4.3959 19 7 0.2928 2.9876 -3.8213 20 14 -0.5651 1.3627 -5.8959 21 1 -1.3708 0.1508 -5.6008 22 1 -1.4718 2.4885 -6.2362 23 1 0.3379 1.0897 -7.0428 24 1 -0.3634 -1.0276 0.0181 25 1 -0.3634 0.5294 0.8808 26 1 -0.3634 0.4981 -0.8988 27 1 4.4171 -3.0740 1.3347 28 1 3.7759 -2.1319 2.7020 29 1 2.6934 -3.1885 1.7638 30 1 4.7561 -1.1290 -1.4987 31 1 3.9490 -2.3652 -2.4932 32 1 4.8215 -2.8412 -1.0165 33 1 3.6535 0.6757 -1.4863 34 1 3.4005 -0.3941 -2.8862 35 1 2.5570 2.5818 -1.2359 36 1 2.1628 3.2894 -2.8209 37 1 0.8646 2.6529 -1.7828 38 1 -0.3531 3.6180 -4.1768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701364088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:35 Heat of formation + Delta-G solvation = -30.197245 kcal Electronic energy + Delta-G solvation = -17177.314850 eV Core-core repulsion = 14634.436193 eV Total energy + Delta-G solvation = -2542.878657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70553 -35.64897 -33.61617 -32.48522 -30.56994 -29.06601 -27.11513 -25.90746 -24.88104 -22.51886 -21.00721 -20.80281 -18.95355 -16.74328 -15.71968 -15.34038 -14.98710 -14.48694 -13.92868 -13.57474 -13.26801 -12.74998 -12.63696 -12.41488 -12.10448 -11.97370 -11.76395 -11.50926 -11.36364 -11.14701 -10.95473 -10.72291 -10.52155 -10.39699 -10.21144 -10.06231 -9.83357 -9.70877 -9.60406 -9.10567 -8.48515 -6.84452 -5.60355 -3.02727 3.40608 3.46063 3.46691 4.21692 4.51953 4.92024 4.97766 5.25668 5.38631 5.45646 5.56164 5.59639 5.67713 5.71457 5.82173 5.87840 5.96477 6.05344 6.13160 6.16710 6.22311 6.31071 6.35985 6.44419 6.60240 6.65610 6.73631 6.80508 6.82475 7.00970 7.47805 7.68594 7.74749 7.98214 8.42379 9.31698 9.95042 10.38548 11.39050 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.007988 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.842892 B = 3504.489971 C = 3711.619850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.069 0.931 4 O -0.384 6.384 5 C 0.076 3.924 6 H 0.064 0.936 7 C -0.143 4.143 8 C -0.118 4.118 9 H 0.075 0.925 10 C -0.140 4.140 11 C -0.134 4.134 12 H 0.084 0.916 13 C 0.162 3.838 14 N -0.611 5.611 15 C 0.170 3.830 16 C -0.242 4.242 17 H 0.072 0.928 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.047 0.953 35 H -0.012 1.012 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -8.415 7.542 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.029 3.971 3 H 0.087 0.913 4 O -0.304 6.304 5 C 0.019 3.981 6 H 0.082 0.918 7 C -0.200 4.200 8 C -0.138 4.138 9 H 0.093 0.907 10 C -0.198 4.198 11 C -0.155 4.155 12 H 0.102 0.898 13 C 0.035 3.965 14 N -0.334 5.334 15 C 0.026 3.974 16 C -0.371 4.371 17 H 0.090 0.910 18 C -0.200 4.200 19 N -0.567 5.567 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.006 0.994 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.451 -8.231 7.676 12.505 hybrid contribution -0.657 -0.191 -1.026 1.233 sum 4.794 -8.423 6.649 11.753 Atomic orbital electron populations 1.21848 0.94140 1.01465 1.02471 1.22701 0.94829 0.95675 0.83859 0.91296 1.88807 1.39237 1.67939 1.34441 1.23073 0.88253 0.93466 0.93333 0.91802 1.21756 1.01628 0.97399 0.99206 1.22739 0.97118 0.99097 0.94806 0.90692 1.21770 0.96492 1.01547 0.99949 1.23364 0.99732 0.95458 0.96988 0.89796 1.20901 0.91450 0.90105 0.94086 1.44058 1.53525 1.10121 1.25694 1.21070 0.97604 0.86083 0.92599 1.19228 1.15691 1.03156 0.99058 0.91037 1.24849 0.99415 0.96524 0.99261 1.70198 1.37874 1.06843 1.41740 0.86318 0.80304 0.77227 0.82626 1.21257 1.21664 1.21243 0.93173 0.93274 0.89996 0.91524 0.92398 0.92118 0.91978 0.92119 0.93310 0.94346 0.93472 0.99367 0.93799 0.94178 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.37 37.15 0.35 -2.28 16 2 C 0.09 1.62 3.50 -26.16 -0.09 1.53 16 3 H 0.07 1.41 5.92 -51.93 -0.31 1.10 16 4 O -0.38 -6.86 10.90 -35.23 -0.38 -7.24 16 5 C 0.08 1.12 3.43 -25.68 -0.09 1.04 16 6 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 7 C -0.14 -1.68 9.66 37.16 0.36 -1.32 16 8 C -0.12 -1.76 3.09 -88.61 -0.27 -2.03 16 9 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 10 C -0.14 -1.82 7.99 37.16 0.30 -1.52 16 11 C -0.13 -2.46 2.82 -89.09 -0.25 -2.71 16 12 H 0.08 1.71 7.70 -51.93 -0.40 1.31 16 13 C 0.16 3.27 3.70 -4.05 -0.01 3.25 16 14 N -0.61 -15.12 2.84 -181.13 -0.51 -15.63 16 15 C 0.17 4.27 7.99 59.85 0.48 4.75 16 16 C -0.24 -6.56 9.81 -15.06 -0.15 -6.71 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 18 C 0.00 -0.13 5.46 -17.43 -0.10 -0.22 16 19 N -0.92 -26.57 9.45 55.49 0.52 -26.04 16 20 Si 0.90 21.96 29.56 -169.99 -5.02 16.93 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.82 6.63 -51.93 -0.34 0.48 16 31 H 0.06 0.80 7.72 -51.93 -0.40 0.40 16 32 H 0.05 0.52 8.13 -51.92 -0.42 0.10 16 33 H 0.04 0.74 7.38 -51.93 -0.38 0.35 16 34 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 35 H -0.01 -0.27 6.93 -51.93 -0.36 -0.63 16 36 H 0.04 1.20 7.04 -51.93 -0.37 0.83 16 37 H 0.04 1.08 7.05 -51.93 -0.37 0.71 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 292.95 15.07 4.41 4.41 Total: -1.00 -28.85 292.95 -7.07 -35.92 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.60 Total: -2.12 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 0.52 Total: -6.23 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.01 Total: -41.67 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.38 Total: -7.24 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.85 -7.07 -35.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701364088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.721 kcal (2) G-P(sol) polarization free energy of solvation -28.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds