Wall clock time and date at job start Mon Mar 30 2020 03:29:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09000 * 109.87132 * 2 1
4 4 O 1.43751 * 110.00672 * 121.08433 * 2 1 3
5 5 C 1.44420 * 106.99903 * 145.98135 * 4 2 1
6 6 H 1.08998 * 110.59618 * 78.47947 * 5 4 2
7 7 C 1.53001 * 110.64942 * 201.48285 * 5 4 2
8 8 C 1.54992 * 103.47487 * 319.99266 * 5 4 2
9 9 H 1.09001 * 110.90968 * 278.76133 * 8 5 4
10 10 C 1.52999 * 110.90694 * 155.18956 * 8 5 4
11 11 C 1.54100 * 109.88270 * 238.99606 * 2 1 3
12 12 H 1.08999 * 110.48108 * 357.06747 * 11 2 1
13 13 C 1.52993 * 110.48943 * 119.71764 * 11 2 1
14 14 N 1.46495 * 109.47227 * 290.61166 * 13 11 2
15 15 C 1.46500 * 119.99934 * 95.91739 * 14 13 11
16 16 C 1.36938 * 120.00377 * 275.91739 * 14 13 11
17 17 H 1.07996 * 119.99799 * 353.04594 * 16 14 13
18 18 C 1.38805 * 120.00124 * 173.03870 * 16 14 13
19 19 N 1.31615 * 120.00468 * 5.34236 * 18 16 14
20 20 Si 1.86809 * 120.00043 * 185.34162 * 18 16 14
21 21 H 1.48495 * 109.46856 * 60.00109 * 20 18 16
22 22 H 1.48500 * 109.47114 * 179.97438 * 20 18 16
23 23 H 1.48499 * 109.46737 * 300.00110 * 20 18 16
24 24 H 1.09006 * 109.47171 * 181.00638 * 1 2 3
25 25 H 1.09001 * 109.47555 * 301.00530 * 1 2 3
26 26 H 1.08995 * 109.47361 * 61.00666 * 1 2 3
27 27 H 1.09000 * 109.47150 * 174.07074 * 7 5 4
28 28 H 1.08998 * 109.47448 * 294.07240 * 7 5 4
29 29 H 1.09006 * 109.46848 * 54.07397 * 7 5 4
30 30 H 1.08996 * 109.47264 * 304.33131 * 10 8 5
31 31 H 1.09002 * 109.47283 * 184.32709 * 10 8 5
32 32 H 1.09008 * 109.46729 * 64.33242 * 10 8 5
33 33 H 1.08996 * 109.47261 * 50.61454 * 13 11 2
34 34 H 1.09005 * 109.46849 * 170.61637 * 13 11 2
35 35 H 1.09003 * 109.46988 * 4.30916 * 15 14 13
36 36 H 1.09004 * 109.46902 * 124.30513 * 15 14 13
37 37 H 1.08997 * 109.47550 * 244.30605 * 15 14 13
38 38 H 0.96998 * 120.00894 * 179.97438 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9004 1.0251 0.0000
4 8 2.0217 -0.6974 1.1568
5 6 3.2418 -1.3618 0.7622
6 1 4.0711 -0.6550 0.7329
7 6 3.5546 -2.5225 1.7087
8 6 2.9227 -1.8882 -0.6602
9 1 2.3593 -2.8201 -0.6128
10 6 4.2045 -2.0688 -1.4758
11 6 2.0540 -0.7464 -1.2421
12 1 1.2247 -1.1546 -1.8199
13 6 2.9042 0.1854 -2.1078
14 7 2.0442 1.1976 -2.7259
15 6 1.8978 2.5147 -2.1014
16 6 1.3773 0.9126 -3.8874
17 1 1.5706 -0.0137 -4.4078
18 6 0.4526 1.8144 -4.3959
19 7 0.2928 2.9876 -3.8213
20 14 -0.5651 1.3627 -5.8959
21 1 -1.3708 0.1508 -5.6008
22 1 -1.4718 2.4885 -6.2362
23 1 0.3379 1.0897 -7.0428
24 1 -0.3634 -1.0276 0.0181
25 1 -0.3634 0.5294 0.8808
26 1 -0.3634 0.4981 -0.8988
27 1 4.4171 -3.0740 1.3347
28 1 3.7759 -2.1319 2.7020
29 1 2.6934 -3.1885 1.7638
30 1 4.7561 -1.1290 -1.4987
31 1 3.9490 -2.3652 -2.4932
32 1 4.8215 -2.8412 -1.0165
33 1 3.6535 0.6757 -1.4863
34 1 3.4005 -0.3941 -2.8862
35 1 2.5570 2.5818 -1.2359
36 1 2.1628 3.2894 -2.8209
37 1 0.8646 2.6529 -1.7828
38 1 -0.3531 3.6180 -4.1768
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701364088.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:34
Heat of formation + Delta-G solvation = -46.769643 kcal
Electronic energy + Delta-G solvation = -17178.033483 eV
Core-core repulsion = 14634.436193 eV
Total energy + Delta-G solvation = -2543.597291 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.07976 -37.48651 -34.99659 -34.01327 -32.43028 -30.28926 -28.60876 -27.94931
-26.37147 -23.92931 -22.80313 -22.14704 -20.36789 -18.72662 -17.29579 -16.72802
-16.56667 -16.07775 -15.44475 -15.20891 -14.91770 -14.19490 -14.10785 -13.85062
-13.55869 -13.15502 -13.12459 -13.01728 -12.90057 -12.73991 -12.64350 -12.39669
-12.19880 -12.07921 -11.88586 -11.72136 -11.58214 -11.19177 -11.12328 -10.59801
-10.47645 -8.86981 -7.71586 -5.14915 1.46694 1.48702 1.54877 2.52493
2.93628 3.35400 3.56873 3.75065 3.89704 4.01982 4.09933 4.32445
4.45770 4.51180 4.55421 4.60709 4.65302 4.72148 4.81912 4.84272
4.91709 4.98698 5.08961 5.13466 5.17527 5.23450 5.27721 5.39592
5.41537 5.50381 5.57280 5.62902 5.87874 6.13069 6.33921 7.20931
7.94192 8.33195 9.26607
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.037036 B = 0.007988 C = 0.007542
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.842892 B = 3504.489971 C = 3711.619850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.090 3.910
3 H 0.049 0.951
4 O -0.395 6.395
5 C 0.069 3.931
6 H 0.068 0.932
7 C -0.137 4.137
8 C -0.109 4.109
9 H 0.083 0.917
10 C -0.138 4.138
11 C -0.129 4.129
12 H 0.060 0.940
13 C 0.163 3.837
14 N -0.624 5.624
15 C 0.190 3.810
16 C -0.247 4.247
17 H 0.077 0.923
18 C -0.060 4.060
19 N -0.947 5.947
20 Si 0.966 3.034
21 H -0.281 1.281
22 H -0.297 1.297
23 H -0.278 1.278
24 H 0.060 0.940
25 H 0.057 0.943
26 H 0.050 0.950
27 H 0.092 0.908
28 H 0.063 0.937
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.056 0.944
32 H 0.078 0.922
33 H 0.050 0.950
34 H 0.055 0.945
35 H 0.013 0.987
36 H 0.014 0.986
37 H 0.013 0.987
38 H 0.243 0.757
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.863 -10.461 8.030 14.866
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.032 3.968
3 H 0.067 0.933
4 O -0.316 6.316
5 C 0.012 3.988
6 H 0.086 0.914
7 C -0.194 4.194
8 C -0.128 4.128
9 H 0.101 0.899
10 C -0.195 4.195
11 C -0.151 4.151
12 H 0.079 0.921
13 C 0.037 3.963
14 N -0.347 5.347
15 C 0.045 3.955
16 C -0.376 4.376
17 H 0.095 0.905
18 C -0.253 4.253
19 N -0.596 5.596
20 Si 0.795 3.205
21 H -0.207 1.207
22 H -0.223 1.223
23 H -0.204 1.204
24 H 0.079 0.921
25 H 0.076 0.924
26 H 0.069 0.931
27 H 0.111 0.889
28 H 0.082 0.918
29 H 0.078 0.922
30 H 0.077 0.923
31 H 0.075 0.925
32 H 0.097 0.903
33 H 0.068 0.932
34 H 0.073 0.927
35 H 0.031 0.969
36 H 0.032 0.968
37 H 0.032 0.968
38 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges 6.673 -10.318 8.176 14.760
hybrid contribution -0.959 0.409 -1.119 1.529
sum 5.714 -9.909 7.057 13.440
Atomic orbital electron populations
1.21724 0.94396 1.01807 1.01286 1.22517 0.94699 0.94931 0.84637
0.93261 1.88797 1.40692 1.68085 1.33979 1.23356 0.87070 0.94405
0.93924 0.91447 1.21763 1.02618 0.96200 0.98847 1.22716 0.97438
0.97754 0.94911 0.89890 1.21756 0.95663 1.02422 0.99633 1.23151
0.99284 0.96347 0.96272 0.92106 1.21053 0.91166 0.89535 0.94522
1.44255 1.53954 1.10952 1.25580 1.20690 0.96480 0.85834 0.92451
1.19564 1.15413 1.02972 0.99685 0.90473 1.25585 1.00838 0.96670
1.02228 1.70402 1.38408 1.07655 1.43161 0.85344 0.78734 0.76648
0.79772 1.20692 1.22347 1.20366 0.92091 0.92382 0.93112 0.88907
0.91817 0.92242 0.92328 0.92504 0.90335 0.93210 0.92662 0.96853
0.96758 0.96835 0.94753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.03 9.37 71.98 0.67 -4.35 16
2 C 0.09 3.32 3.50 30.96 0.11 3.43 16
3 H 0.05 2.01 5.92 -2.39 -0.01 2.00 16
4 O -0.39 -13.45 10.90 -148.98 -1.62 -15.07 16
5 C 0.07 1.85 3.43 31.28 0.11 1.96 16
6 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16
7 C -0.14 -2.72 9.66 71.98 0.70 -2.02 16
8 C -0.11 -2.95 3.09 -9.49 -0.03 -2.98 16
9 H 0.08 2.16 8.06 -2.39 -0.02 2.14 16
10 C -0.14 -3.10 7.99 71.98 0.58 -2.52 16
11 C -0.13 -4.62 2.82 -9.80 -0.03 -4.65 16
12 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16
13 C 0.16 6.41 3.70 86.38 0.32 6.73 16
14 N -0.62 -31.06 2.84 -726.96 -2.06 -33.12 16
15 C 0.19 9.73 7.99 127.77 1.02 10.75 16
16 C -0.25 -13.42 9.81 84.03 0.82 -12.59 16
17 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16
18 C -0.06 -3.39 5.46 84.86 0.46 -2.93 16
19 N -0.95 -56.27 9.45 21.65 0.20 -56.07 16
20 Si 0.97 45.55 29.56 68.60 2.03 47.57 16
21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16
22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16
23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16
24 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16
27 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16
28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16
30 H 0.06 1.36 6.63 -2.39 -0.02 1.35 16
31 H 0.06 1.34 7.72 -2.39 -0.02 1.32 16
32 H 0.08 1.33 8.13 -2.38 -0.02 1.31 16
33 H 0.05 1.84 7.38 -2.39 -0.02 1.82 16
34 H 0.06 2.09 6.47 -2.38 -0.02 2.07 16
35 H 0.01 0.59 6.93 -2.39 -0.02 0.57 16
36 H 0.01 0.79 7.04 -2.38 -0.02 0.77 16
37 H 0.01 0.74 7.05 -2.39 -0.02 0.73 16
38 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16
Total: -1.00 -62.10 292.95 4.28 -57.82
By element:
Atomic # 1 Polarization: 7.05 SS G_CDS: 1.00 Total: 8.05 kcal
Atomic # 6 Polarization: -13.91 SS G_CDS: 4.73 Total: -9.18 kcal
Atomic # 7 Polarization: -87.33 SS G_CDS: -1.86 Total: -89.19 kcal
Atomic # 8 Polarization: -13.45 SS G_CDS: -1.62 Total: -15.07 kcal
Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal
Total: -62.10 4.28 -57.82 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701364088.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.049 kcal
(2) G-P(sol) polarization free energy of solvation -62.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.770 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds