Wall clock time and date at job start Mon Mar 30 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.87132 * 2 1 4 4 O 1.43751 * 110.00672 * 121.08433 * 2 1 3 5 5 C 1.44420 * 106.99903 * 145.98135 * 4 2 1 6 6 H 1.08998 * 110.59618 * 78.47947 * 5 4 2 7 7 C 1.53001 * 110.64942 * 201.48285 * 5 4 2 8 8 C 1.54992 * 103.47487 * 319.99266 * 5 4 2 9 9 H 1.09001 * 110.90968 * 278.76133 * 8 5 4 10 10 C 1.52999 * 110.90694 * 155.18956 * 8 5 4 11 11 C 1.54100 * 109.88270 * 238.99606 * 2 1 3 12 12 H 1.08999 * 110.48108 * 357.06747 * 11 2 1 13 13 C 1.52993 * 110.48943 * 119.71764 * 11 2 1 14 14 N 1.46495 * 109.47227 * 290.61166 * 13 11 2 15 15 C 1.46500 * 119.99934 * 95.91739 * 14 13 11 16 16 C 1.36938 * 120.00377 * 275.91739 * 14 13 11 17 17 H 1.07996 * 119.99799 * 353.04594 * 16 14 13 18 18 C 1.38805 * 120.00124 * 173.03870 * 16 14 13 19 19 N 1.31615 * 120.00468 * 5.34236 * 18 16 14 20 20 Si 1.86809 * 120.00043 * 185.34162 * 18 16 14 21 21 H 1.48495 * 109.46856 * 60.00109 * 20 18 16 22 22 H 1.48500 * 109.47114 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46737 * 300.00110 * 20 18 16 24 24 H 1.09006 * 109.47171 * 181.00638 * 1 2 3 25 25 H 1.09001 * 109.47555 * 301.00530 * 1 2 3 26 26 H 1.08995 * 109.47361 * 61.00666 * 1 2 3 27 27 H 1.09000 * 109.47150 * 174.07074 * 7 5 4 28 28 H 1.08998 * 109.47448 * 294.07240 * 7 5 4 29 29 H 1.09006 * 109.46848 * 54.07397 * 7 5 4 30 30 H 1.08996 * 109.47264 * 304.33131 * 10 8 5 31 31 H 1.09002 * 109.47283 * 184.32709 * 10 8 5 32 32 H 1.09008 * 109.46729 * 64.33242 * 10 8 5 33 33 H 1.08996 * 109.47261 * 50.61454 * 13 11 2 34 34 H 1.09005 * 109.46849 * 170.61637 * 13 11 2 35 35 H 1.09003 * 109.46988 * 4.30916 * 15 14 13 36 36 H 1.09004 * 109.46902 * 124.30513 * 15 14 13 37 37 H 1.08997 * 109.47550 * 244.30605 * 15 14 13 38 38 H 0.96998 * 120.00894 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6974 1.1568 5 6 3.2418 -1.3618 0.7622 6 1 4.0711 -0.6550 0.7329 7 6 3.5546 -2.5225 1.7087 8 6 2.9227 -1.8882 -0.6602 9 1 2.3593 -2.8201 -0.6128 10 6 4.2045 -2.0688 -1.4758 11 6 2.0540 -0.7464 -1.2421 12 1 1.2247 -1.1546 -1.8199 13 6 2.9042 0.1854 -2.1078 14 7 2.0442 1.1976 -2.7259 15 6 1.8978 2.5147 -2.1014 16 6 1.3773 0.9126 -3.8874 17 1 1.5706 -0.0137 -4.4078 18 6 0.4526 1.8144 -4.3959 19 7 0.2928 2.9876 -3.8213 20 14 -0.5651 1.3627 -5.8959 21 1 -1.3708 0.1508 -5.6008 22 1 -1.4718 2.4885 -6.2362 23 1 0.3379 1.0897 -7.0428 24 1 -0.3634 -1.0276 0.0181 25 1 -0.3634 0.5294 0.8808 26 1 -0.3634 0.4981 -0.8988 27 1 4.4171 -3.0740 1.3347 28 1 3.7759 -2.1319 2.7020 29 1 2.6934 -3.1885 1.7638 30 1 4.7561 -1.1290 -1.4987 31 1 3.9490 -2.3652 -2.4932 32 1 4.8215 -2.8412 -1.0165 33 1 3.6535 0.6757 -1.4863 34 1 3.4005 -0.3941 -2.8862 35 1 2.5570 2.5818 -1.2359 36 1 2.1628 3.2894 -2.8209 37 1 0.8646 2.6529 -1.7828 38 1 -0.3531 3.6180 -4.1768 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701364088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:34 Heat of formation + Delta-G solvation = -46.769643 kcal Electronic energy + Delta-G solvation = -17178.033483 eV Core-core repulsion = 14634.436193 eV Total energy + Delta-G solvation = -2543.597291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07976 -37.48651 -34.99659 -34.01327 -32.43028 -30.28926 -28.60876 -27.94931 -26.37147 -23.92931 -22.80313 -22.14704 -20.36789 -18.72662 -17.29579 -16.72802 -16.56667 -16.07775 -15.44475 -15.20891 -14.91770 -14.19490 -14.10785 -13.85062 -13.55869 -13.15502 -13.12459 -13.01728 -12.90057 -12.73991 -12.64350 -12.39669 -12.19880 -12.07921 -11.88586 -11.72136 -11.58214 -11.19177 -11.12328 -10.59801 -10.47645 -8.86981 -7.71586 -5.14915 1.46694 1.48702 1.54877 2.52493 2.93628 3.35400 3.56873 3.75065 3.89704 4.01982 4.09933 4.32445 4.45770 4.51180 4.55421 4.60709 4.65302 4.72148 4.81912 4.84272 4.91709 4.98698 5.08961 5.13466 5.17527 5.23450 5.27721 5.39592 5.41537 5.50381 5.57280 5.62902 5.87874 6.13069 6.33921 7.20931 7.94192 8.33195 9.26607 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037036 B = 0.007988 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.842892 B = 3504.489971 C = 3711.619850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.049 0.951 4 O -0.395 6.395 5 C 0.069 3.931 6 H 0.068 0.932 7 C -0.137 4.137 8 C -0.109 4.109 9 H 0.083 0.917 10 C -0.138 4.138 11 C -0.129 4.129 12 H 0.060 0.940 13 C 0.163 3.837 14 N -0.624 5.624 15 C 0.190 3.810 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.966 3.034 21 H -0.281 1.281 22 H -0.297 1.297 23 H -0.278 1.278 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.014 0.986 37 H 0.013 0.987 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.863 -10.461 8.030 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 H 0.067 0.933 4 O -0.316 6.316 5 C 0.012 3.988 6 H 0.086 0.914 7 C -0.194 4.194 8 C -0.128 4.128 9 H 0.101 0.899 10 C -0.195 4.195 11 C -0.151 4.151 12 H 0.079 0.921 13 C 0.037 3.963 14 N -0.347 5.347 15 C 0.045 3.955 16 C -0.376 4.376 17 H 0.095 0.905 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.795 3.205 21 H -0.207 1.207 22 H -0.223 1.223 23 H -0.204 1.204 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 6.673 -10.318 8.176 14.760 hybrid contribution -0.959 0.409 -1.119 1.529 sum 5.714 -9.909 7.057 13.440 Atomic orbital electron populations 1.21724 0.94396 1.01807 1.01286 1.22517 0.94699 0.94931 0.84637 0.93261 1.88797 1.40692 1.68085 1.33979 1.23356 0.87070 0.94405 0.93924 0.91447 1.21763 1.02618 0.96200 0.98847 1.22716 0.97438 0.97754 0.94911 0.89890 1.21756 0.95663 1.02422 0.99633 1.23151 0.99284 0.96347 0.96272 0.92106 1.21053 0.91166 0.89535 0.94522 1.44255 1.53954 1.10952 1.25580 1.20690 0.96480 0.85834 0.92451 1.19564 1.15413 1.02972 0.99685 0.90473 1.25585 1.00838 0.96670 1.02228 1.70402 1.38408 1.07655 1.43161 0.85344 0.78734 0.76648 0.79772 1.20692 1.22347 1.20366 0.92091 0.92382 0.93112 0.88907 0.91817 0.92242 0.92328 0.92504 0.90335 0.93210 0.92662 0.96853 0.96758 0.96835 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.37 71.98 0.67 -4.35 16 2 C 0.09 3.32 3.50 30.96 0.11 3.43 16 3 H 0.05 2.01 5.92 -2.39 -0.01 2.00 16 4 O -0.39 -13.45 10.90 -148.98 -1.62 -15.07 16 5 C 0.07 1.85 3.43 31.28 0.11 1.96 16 6 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 7 C -0.14 -2.72 9.66 71.98 0.70 -2.02 16 8 C -0.11 -2.95 3.09 -9.49 -0.03 -2.98 16 9 H 0.08 2.16 8.06 -2.39 -0.02 2.14 16 10 C -0.14 -3.10 7.99 71.98 0.58 -2.52 16 11 C -0.13 -4.62 2.82 -9.80 -0.03 -4.65 16 12 H 0.06 2.46 7.70 -2.39 -0.02 2.44 16 13 C 0.16 6.41 3.70 86.38 0.32 6.73 16 14 N -0.62 -31.06 2.84 -726.96 -2.06 -33.12 16 15 C 0.19 9.73 7.99 127.77 1.02 10.75 16 16 C -0.25 -13.42 9.81 84.03 0.82 -12.59 16 17 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 18 C -0.06 -3.39 5.46 84.86 0.46 -2.93 16 19 N -0.95 -56.27 9.45 21.65 0.20 -56.07 16 20 Si 0.97 45.55 29.56 68.60 2.03 47.57 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 24 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 1.37 8.13 -2.39 -0.02 1.35 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.36 6.63 -2.39 -0.02 1.35 16 31 H 0.06 1.34 7.72 -2.39 -0.02 1.32 16 32 H 0.08 1.33 8.13 -2.38 -0.02 1.31 16 33 H 0.05 1.84 7.38 -2.39 -0.02 1.82 16 34 H 0.06 2.09 6.47 -2.38 -0.02 2.07 16 35 H 0.01 0.59 6.93 -2.39 -0.02 0.57 16 36 H 0.01 0.79 7.04 -2.38 -0.02 0.77 16 37 H 0.01 0.74 7.05 -2.39 -0.02 0.73 16 38 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -62.10 292.95 4.28 -57.82 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.00 Total: 8.05 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.73 Total: -9.18 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -1.86 Total: -89.19 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -1.62 Total: -15.07 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -62.10 4.28 -57.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701364088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.049 kcal (2) G-P(sol) polarization free energy of solvation -62.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds