Wall clock time and date at job start Mon Mar 30 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99256 * 2 1 4 4 O 1.43744 * 109.87884 * 121.08306 * 2 1 3 5 5 C 1.44377 * 106.97924 * 145.93097 * 4 2 1 6 6 H 1.09009 * 110.61159 * 78.43840 * 5 4 2 7 7 C 1.52998 * 110.62255 * 201.43682 * 5 4 2 8 8 C 1.54999 * 103.49095 * 319.94491 * 5 4 2 9 9 H 1.08998 * 110.90517 * 155.21932 * 8 5 4 10 10 C 1.53000 * 110.90347 * 278.82047 * 8 5 4 11 11 C 1.54101 * 109.87899 * 238.91021 * 2 1 3 12 12 H 1.09007 * 110.48483 * 357.36132 * 11 2 1 13 13 C 1.53004 * 110.48663 * 119.86858 * 11 2 1 14 14 N 1.46494 * 109.47471 * 294.51191 * 13 11 2 15 15 C 1.46498 * 120.00133 * 93.06395 * 14 13 11 16 16 C 1.36943 * 119.99965 * 273.06690 * 14 13 11 17 17 H 1.08002 * 120.00178 * 143.84400 * 16 14 13 18 18 C 1.38809 * 119.99822 * 323.84305 * 16 14 13 19 19 N 1.31620 * 119.99615 * 157.82671 * 18 16 14 20 20 Si 1.86799 * 120.00293 * 337.83167 * 18 16 14 21 21 H 1.48504 * 109.47071 * 94.78052 * 20 18 16 22 22 H 1.48493 * 109.47178 * 214.78010 * 20 18 16 23 23 H 1.48497 * 109.46828 * 334.78034 * 20 18 16 24 24 H 1.08997 * 109.47821 * 181.08625 * 1 2 3 25 25 H 1.08997 * 109.47028 * 301.09072 * 1 2 3 26 26 H 1.09004 * 109.46883 * 61.08110 * 1 2 3 27 27 H 1.08999 * 109.46830 * 58.54662 * 7 5 4 28 28 H 1.08994 * 109.47154 * 178.54677 * 7 5 4 29 29 H 1.08999 * 109.47225 * 298.54969 * 7 5 4 30 30 H 1.08997 * 109.47063 * 172.70296 * 10 8 5 31 31 H 1.09002 * 109.47349 * 292.70650 * 10 8 5 32 32 H 1.09005 * 109.47191 * 52.70589 * 10 8 5 33 33 H 1.08999 * 109.46376 * 54.51168 * 13 11 2 34 34 H 1.09000 * 109.46715 * 174.50828 * 13 11 2 35 35 H 1.09000 * 109.47298 * 30.80440 * 15 14 13 36 36 H 1.09005 * 109.47203 * 150.80530 * 15 14 13 37 37 H 1.08999 * 109.47249 * 270.80752 * 15 14 13 38 38 H 0.97002 * 119.99567 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2378 -1.3643 0.7648 6 1 4.0685 -0.6589 0.7356 7 6 3.5474 -2.5245 1.7129 8 6 2.9194 -1.8916 -0.6575 9 1 3.8331 -2.0226 -1.2373 10 6 2.1255 -3.1977 -0.5905 11 6 2.0540 -0.7483 -1.2410 12 1 1.2244 -1.1529 -1.8210 13 6 2.9073 0.1813 -2.1062 14 7 2.0663 1.2498 -2.6513 15 6 1.9501 2.5254 -1.9403 16 6 1.3888 1.0562 -3.8255 17 1 0.4047 1.4811 -3.9576 18 6 1.9668 0.3138 -4.8461 19 7 1.2078 -0.2426 -5.7662 20 14 3.8218 0.1042 -4.9135 21 1 4.2007 -1.1679 -4.2475 22 1 4.2652 0.0724 -6.3303 23 1 4.4740 1.2415 -4.2161 24 1 -0.3635 -1.0274 0.0195 25 1 -0.3633 0.5307 0.8800 26 1 -0.3633 0.4970 -0.8996 27 1 2.7167 -3.2303 1.7067 28 1 4.4557 -3.0296 1.3845 29 1 3.6901 -2.1403 2.7229 30 1 1.8033 -3.4790 -1.5930 31 1 2.7556 -3.9852 -0.1770 32 1 1.2518 -3.0596 0.0465 33 1 3.7001 0.6173 -1.4983 34 1 3.3483 -0.3875 -2.9248 35 1 2.8780 2.7294 -1.4060 36 1 1.7601 3.3247 -2.6567 37 1 1.1258 2.4712 -1.2293 38 1 1.6117 -0.7611 -6.4796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701364094.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:41 Heat of formation + Delta-G solvation = -32.676091 kcal Electronic energy + Delta-G solvation = -17377.401104 eV Core-core repulsion = 14834.414956 eV Total energy + Delta-G solvation = -2542.986148 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.80554 -35.89138 -33.37856 -32.33176 -31.32797 -28.92061 -28.15012 -26.19492 -24.49842 -22.78600 -21.12660 -20.23419 -19.65380 -16.86778 -15.85255 -15.51295 -15.04116 -14.74988 -13.90797 -13.79703 -13.21663 -12.86990 -12.83336 -12.48067 -12.36690 -12.11304 -11.88943 -11.71381 -11.54642 -11.47986 -11.26953 -10.93671 -10.84425 -10.57627 -10.23156 -10.06302 -9.99685 -9.72289 -9.43064 -9.11734 -8.50560 -6.81849 -6.00790 -3.40992 3.27526 3.44526 3.49368 4.17312 4.50417 4.81090 5.00767 5.14751 5.27903 5.35278 5.42959 5.47143 5.64557 5.70861 5.78044 5.84857 5.92558 6.00541 6.04646 6.15042 6.18318 6.23323 6.27522 6.32589 6.43142 6.46978 6.59461 6.62942 6.66592 6.68073 6.75183 7.02701 7.42057 8.03764 8.36091 8.97783 9.70527 10.11259 11.14984 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.010463 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.216988 B = 2675.445100 C = 3015.871533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.085 3.915 3 H 0.068 0.932 4 O -0.381 6.381 5 C 0.077 3.923 6 H 0.062 0.938 7 C -0.145 4.145 8 C -0.122 4.122 9 H 0.079 0.921 10 C -0.137 4.137 11 C -0.127 4.127 12 H 0.093 0.907 13 C 0.147 3.853 14 N -0.610 5.610 15 C 0.121 3.879 16 C -0.267 4.267 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.285 1.285 22 H -0.302 1.302 23 H -0.272 1.272 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.045 0.955 37 H 0.011 0.989 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.922 -3.020 12.058 13.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.086 0.914 4 O -0.301 6.301 5 C 0.019 3.981 6 H 0.080 0.920 7 C -0.202 4.202 8 C -0.141 4.141 9 H 0.097 0.903 10 C -0.194 4.194 11 C -0.149 4.149 12 H 0.112 0.888 13 C 0.021 3.979 14 N -0.334 5.334 15 C -0.024 4.024 16 C -0.395 4.395 17 H 0.097 0.903 18 C -0.165 4.165 19 N -0.541 5.541 20 Si 0.709 3.291 21 H -0.214 1.214 22 H -0.231 1.231 23 H -0.197 1.197 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.029 0.971 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.792 -3.063 12.095 13.040 hybrid contribution 1.160 -0.166 -0.446 1.253 sum 4.951 -3.229 11.649 13.063 Atomic orbital electron populations 1.21844 0.94159 1.01906 1.01971 1.22740 0.94807 0.95540 0.84122 0.91417 1.88790 1.39375 1.67734 1.34196 1.23031 0.88101 0.93435 0.93521 0.91974 1.21818 1.01802 0.97614 0.99007 1.22717 0.99476 0.96033 0.95919 0.90301 1.21737 0.99904 0.95821 1.01910 1.23257 1.00063 0.95073 0.96468 0.88844 1.21206 0.91913 0.89897 0.94919 1.44035 1.55956 1.09060 1.24354 1.21193 0.97243 0.88349 0.95590 1.18758 0.98320 1.32900 0.89562 0.90323 1.25427 0.97218 0.98184 0.95650 1.69873 1.34717 1.33462 1.16052 0.86924 0.88604 0.77893 0.75636 1.21364 1.23058 1.19666 0.92755 0.93265 0.90433 0.91502 0.91607 0.92471 0.92408 0.92933 0.92330 0.94344 0.93010 0.95806 0.93586 0.97073 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.36 37.16 0.35 -2.05 16 2 C 0.08 1.51 3.34 -26.16 -0.09 1.43 16 3 H 0.07 1.24 5.60 -51.93 -0.29 0.95 16 4 O -0.38 -6.56 10.87 -35.23 -0.38 -6.94 16 5 C 0.08 1.15 3.79 -25.68 -0.10 1.06 16 6 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 7 C -0.15 -1.75 8.88 37.16 0.33 -1.42 16 8 C -0.12 -1.99 3.09 -88.61 -0.27 -2.27 16 9 H 0.08 1.28 7.86 -51.93 -0.41 0.87 16 10 C -0.14 -2.01 7.89 37.16 0.29 -1.72 16 11 C -0.13 -2.45 2.50 -89.09 -0.22 -2.67 16 12 H 0.09 2.04 7.43 -51.93 -0.39 1.65 16 13 C 0.15 3.16 3.89 -4.04 -0.02 3.14 16 14 N -0.61 -14.36 2.38 -181.12 -0.43 -14.79 16 15 C 0.12 2.42 9.33 59.85 0.56 2.98 16 16 C -0.27 -7.36 9.92 -15.06 -0.15 -7.51 16 17 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 18 C 0.04 1.02 5.33 -17.43 -0.09 0.92 16 19 N -0.90 -27.18 13.97 55.49 0.78 -26.41 16 20 Si 0.88 22.19 24.99 -169.99 -4.25 17.94 16 21 H -0.29 -6.95 6.65 56.52 0.38 -6.57 16 22 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 27 H 0.07 0.80 6.46 -51.93 -0.34 0.47 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.65 7.12 -51.93 -0.37 0.28 16 32 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.05 1.23 2.91 -51.93 -0.15 1.08 16 35 H 0.02 0.42 7.88 -51.93 -0.41 0.02 16 36 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 37 H 0.01 0.21 7.36 -51.93 -0.38 -0.17 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 290.32 15.07 4.38 4.38 Total: -1.00 -29.59 290.32 -5.84 -35.43 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.52 Total: -1.50 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 0.59 Total: -8.11 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.34 Total: -41.19 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: -0.38 Total: -6.94 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.25 Total: 17.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.59 -5.84 -35.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701364094.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.755 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds