Wall clock time and date at job start Mon Mar 30 2020 03:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99256 * 2 1 4 4 O 1.43744 * 109.87884 * 121.08306 * 2 1 3 5 5 C 1.44377 * 106.97924 * 145.93097 * 4 2 1 6 6 H 1.09009 * 110.61159 * 78.43840 * 5 4 2 7 7 C 1.52998 * 110.62255 * 201.43682 * 5 4 2 8 8 C 1.54999 * 103.49095 * 319.94491 * 5 4 2 9 9 H 1.08998 * 110.90517 * 155.21932 * 8 5 4 10 10 C 1.53000 * 110.90347 * 278.82047 * 8 5 4 11 11 C 1.54101 * 109.87899 * 238.91021 * 2 1 3 12 12 H 1.09007 * 110.48483 * 357.36132 * 11 2 1 13 13 C 1.53004 * 110.48663 * 119.86858 * 11 2 1 14 14 N 1.46494 * 109.47471 * 294.51191 * 13 11 2 15 15 C 1.46498 * 120.00133 * 93.06395 * 14 13 11 16 16 C 1.36943 * 119.99965 * 273.06690 * 14 13 11 17 17 H 1.08002 * 120.00178 * 143.84400 * 16 14 13 18 18 C 1.38809 * 119.99822 * 323.84305 * 16 14 13 19 19 N 1.31620 * 119.99615 * 157.82671 * 18 16 14 20 20 Si 1.86799 * 120.00293 * 337.83167 * 18 16 14 21 21 H 1.48504 * 109.47071 * 94.78052 * 20 18 16 22 22 H 1.48493 * 109.47178 * 214.78010 * 20 18 16 23 23 H 1.48497 * 109.46828 * 334.78034 * 20 18 16 24 24 H 1.08997 * 109.47821 * 181.08625 * 1 2 3 25 25 H 1.08997 * 109.47028 * 301.09072 * 1 2 3 26 26 H 1.09004 * 109.46883 * 61.08110 * 1 2 3 27 27 H 1.08999 * 109.46830 * 58.54662 * 7 5 4 28 28 H 1.08994 * 109.47154 * 178.54677 * 7 5 4 29 29 H 1.08999 * 109.47225 * 298.54969 * 7 5 4 30 30 H 1.08997 * 109.47063 * 172.70296 * 10 8 5 31 31 H 1.09002 * 109.47349 * 292.70650 * 10 8 5 32 32 H 1.09005 * 109.47191 * 52.70589 * 10 8 5 33 33 H 1.08999 * 109.46376 * 54.51168 * 13 11 2 34 34 H 1.09000 * 109.46715 * 174.50828 * 13 11 2 35 35 H 1.09000 * 109.47298 * 30.80440 * 15 14 13 36 36 H 1.09005 * 109.47203 * 150.80530 * 15 14 13 37 37 H 1.08999 * 109.47249 * 270.80752 * 15 14 13 38 38 H 0.97002 * 119.99567 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 1.1577 5 6 3.2378 -1.3643 0.7648 6 1 4.0685 -0.6589 0.7356 7 6 3.5474 -2.5245 1.7129 8 6 2.9194 -1.8916 -0.6575 9 1 3.8331 -2.0226 -1.2373 10 6 2.1255 -3.1977 -0.5905 11 6 2.0540 -0.7483 -1.2410 12 1 1.2244 -1.1529 -1.8210 13 6 2.9073 0.1813 -2.1062 14 7 2.0663 1.2498 -2.6513 15 6 1.9501 2.5254 -1.9403 16 6 1.3888 1.0562 -3.8255 17 1 0.4047 1.4811 -3.9576 18 6 1.9668 0.3138 -4.8461 19 7 1.2078 -0.2426 -5.7662 20 14 3.8218 0.1042 -4.9135 21 1 4.2007 -1.1679 -4.2475 22 1 4.2652 0.0724 -6.3303 23 1 4.4740 1.2415 -4.2161 24 1 -0.3635 -1.0274 0.0195 25 1 -0.3633 0.5307 0.8800 26 1 -0.3633 0.4970 -0.8996 27 1 2.7167 -3.2303 1.7067 28 1 4.4557 -3.0296 1.3845 29 1 3.6901 -2.1403 2.7229 30 1 1.8033 -3.4790 -1.5930 31 1 2.7556 -3.9852 -0.1770 32 1 1.2518 -3.0596 0.0465 33 1 3.7001 0.6173 -1.4983 34 1 3.3483 -0.3875 -2.9248 35 1 2.8780 2.7294 -1.4060 36 1 1.7601 3.3247 -2.6567 37 1 1.1258 2.4712 -1.2293 38 1 1.6117 -0.7611 -6.4796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701364094.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:41 Heat of formation + Delta-G solvation = -51.039629 kcal Electronic energy + Delta-G solvation = -17378.197407 eV Core-core repulsion = 14834.414956 eV Total energy + Delta-G solvation = -2543.782451 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16972 -37.66592 -34.65284 -34.08686 -33.11688 -30.26762 -29.43852 -28.06275 -26.02379 -24.14113 -22.95214 -21.73175 -20.92779 -18.80218 -17.39961 -17.22780 -16.47576 -16.21197 -15.54020 -15.25918 -14.81258 -14.69597 -14.38064 -13.94281 -13.70788 -13.44794 -13.27085 -13.25332 -12.86143 -12.74439 -12.71880 -12.68475 -12.45261 -12.27284 -11.81812 -11.61993 -11.54759 -11.34688 -11.09423 -10.60121 -10.45893 -8.76774 -8.20529 -5.57459 1.26797 1.39035 1.49550 2.40285 2.91175 3.00819 3.36006 3.74436 3.76322 3.95759 4.04150 4.23543 4.38851 4.43801 4.46700 4.57654 4.63151 4.68572 4.71877 4.76786 4.78648 4.94357 4.97064 5.04433 5.06142 5.09455 5.15669 5.18974 5.23947 5.31970 5.42149 5.48851 5.92083 6.11474 6.15811 6.97296 7.62427 8.04190 8.99323 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028213 B = 0.010463 C = 0.009282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.216988 B = 2675.445100 C = 3015.871533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.067 0.933 4 O -0.387 6.387 5 C 0.075 3.925 6 H 0.071 0.929 7 C -0.141 4.141 8 C -0.122 4.122 9 H 0.082 0.918 10 C -0.132 4.132 11 C -0.126 4.126 12 H 0.057 0.943 13 C 0.143 3.857 14 N -0.621 5.621 15 C 0.120 3.880 16 C -0.255 4.255 17 H 0.042 0.958 18 C -0.019 4.019 19 N -0.947 5.947 20 Si 0.942 3.058 21 H -0.271 1.271 22 H -0.310 1.310 23 H -0.262 1.262 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -3.387 14.319 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.034 3.966 3 H 0.085 0.915 4 O -0.307 6.307 5 C 0.018 3.982 6 H 0.088 0.912 7 C -0.198 4.198 8 C -0.142 4.142 9 H 0.101 0.899 10 C -0.189 4.189 11 C -0.147 4.147 12 H 0.076 0.924 13 C 0.018 3.982 14 N -0.346 5.346 15 C -0.024 4.024 16 C -0.385 4.385 17 H 0.059 0.941 18 C -0.215 4.215 19 N -0.592 5.592 20 Si 0.771 3.229 21 H -0.199 1.199 22 H -0.239 1.239 23 H -0.186 1.186 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.041 0.959 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.842 -3.420 14.401 15.913 hybrid contribution 0.447 -0.015 -1.088 1.177 sum 6.289 -3.435 13.313 15.119 Atomic orbital electron populations 1.21761 0.94002 1.01917 1.01702 1.22590 0.94981 0.95279 0.83775 0.91543 1.88789 1.40444 1.67865 1.33631 1.23240 0.87373 0.94453 0.93178 0.91156 1.21832 1.02764 0.96451 0.98769 1.22758 0.99091 0.95545 0.96770 0.89945 1.21703 1.00113 0.95983 1.01133 1.23083 0.99121 0.96004 0.96469 0.92397 1.21284 0.92455 0.89650 0.94807 1.44134 1.55808 1.11111 1.23515 1.21290 0.99086 0.86547 0.95517 1.18621 0.97186 1.31523 0.91184 0.94072 1.26006 1.01349 0.98590 0.95586 1.69999 1.36525 1.35329 1.17322 0.85887 0.83119 0.78692 0.75158 1.19854 1.23886 1.18600 0.92765 0.91459 0.92574 0.91517 0.89459 0.91530 0.93974 0.90043 0.92759 0.91830 0.94975 0.92961 0.94081 0.95891 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.36 71.98 0.67 -3.86 16 2 C 0.09 3.09 3.34 30.97 0.10 3.20 16 3 H 0.07 2.28 5.60 -2.39 -0.01 2.27 16 4 O -0.39 -12.27 10.87 -148.98 -1.62 -13.89 16 5 C 0.07 1.99 3.79 31.28 0.12 2.11 16 6 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 7 C -0.14 -2.83 8.88 71.98 0.64 -2.19 16 8 C -0.12 -3.71 3.09 -9.49 -0.03 -3.74 16 9 H 0.08 2.45 7.86 -2.39 -0.02 2.43 16 10 C -0.13 -3.64 7.89 71.98 0.57 -3.08 16 11 C -0.13 -4.71 2.50 -9.80 -0.02 -4.73 16 12 H 0.06 2.57 7.43 -2.38 -0.02 2.56 16 13 C 0.14 5.93 3.89 86.38 0.34 6.27 16 14 N -0.62 -28.82 2.38 -726.94 -1.73 -30.55 16 15 C 0.12 4.58 9.33 127.77 1.19 5.77 16 16 C -0.26 -14.40 9.92 84.03 0.83 -13.56 16 17 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 18 C -0.02 -1.10 5.33 84.86 0.45 -0.65 16 19 N -0.95 -59.08 13.97 21.65 0.30 -58.77 16 20 Si 0.94 46.00 24.99 68.60 1.71 47.71 16 21 H -0.27 -12.49 6.65 99.48 0.66 -11.83 16 22 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 23 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 1.35 6.46 -2.39 -0.02 1.33 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.08 1.76 7.12 -2.39 -0.02 1.74 16 32 H 0.05 1.53 8.02 -2.38 -0.02 1.51 16 33 H 0.06 2.31 7.86 -2.39 -0.02 2.29 16 34 H 0.03 1.47 2.91 -2.39 -0.01 1.46 16 35 H 0.05 1.71 7.88 -2.39 -0.02 1.69 16 36 H 0.04 1.59 8.03 -2.38 -0.02 1.57 16 37 H 0.02 0.83 7.36 -2.39 -0.02 0.81 16 38 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -64.14 290.32 4.49 -59.65 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.96 Total: 10.30 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 4.86 Total: -14.46 kcal Atomic # 7 Polarization: -87.90 SS G_CDS: -1.43 Total: -89.33 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.62 Total: -13.89 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.71 Total: 47.71 kcal Total: -64.14 4.49 -59.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701364094.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.611 kcal (2) G-P(sol) polarization free energy of solvation -64.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds