Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47259 * 2 1 4 4 C 1.52999 * 109.47297 * 240.00038 * 2 1 3 5 5 C 1.50701 * 109.47082 * 175.00316 * 4 2 1 6 6 H 1.07998 * 119.99754 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99731 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00428 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99716 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47224 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47464 * 119.99842 * 9 7 5 12 12 H 1.48504 * 109.47174 * 240.00095 * 9 7 5 13 13 N 1.46902 * 109.46911 * 120.00205 * 2 1 3 14 14 C 1.46846 * 111.00121 * 59.21018 * 13 2 1 15 15 C 1.53030 * 109.52435 * 174.16395 * 14 13 2 16 16 C 1.53203 * 109.30370 * 59.17688 * 15 14 13 17 17 H 1.08997 * 109.51203 * 62.24423 * 16 15 14 18 18 O 1.42901 * 109.58036 * 182.46163 * 16 15 14 19 19 C 1.53123 * 109.11533 * 302.37368 * 16 15 14 20 20 C 1.46856 * 110.99619 * 295.00135 * 13 2 1 21 21 H 1.09000 * 109.46462 * 65.82793 * 20 13 2 22 22 C 1.52994 * 109.46313 * 305.85120 * 20 13 2 23 23 H 1.09001 * 109.47211 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47262 * 300.00331 * 1 2 3 25 25 H 1.09001 * 109.46630 * 60.00385 * 1 2 3 26 26 H 1.09003 * 109.47020 * 295.00489 * 4 2 1 27 27 H 1.08996 * 109.47133 * 54.99835 * 4 2 1 28 28 H 0.97001 * 120.00401 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46012 * 294.17710 * 14 13 2 30 30 H 1.08994 * 109.46057 * 54.14289 * 14 13 2 31 31 H 1.08997 * 109.50569 * 179.12357 * 15 14 13 32 32 H 1.09007 * 109.50504 * 299.19535 * 15 14 13 33 33 H 0.96698 * 113.99501 * 299.66709 * 18 16 15 34 34 H 1.09002 * 109.50371 * 297.67165 * 19 16 15 35 35 H 1.09003 * 109.50070 * 177.59325 * 19 16 15 36 36 H 1.09000 * 109.47236 * 299.95548 * 22 20 13 37 37 H 1.09005 * 109.46858 * 59.95310 * 22 20 13 38 38 H 1.08994 * 109.47405 * 179.97438 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0862 -0.5390 7 6 4.2304 -1.1927 -2.3582 8 7 3.5765 -1.8369 -3.3000 9 14 6.0920 -1.0603 -2.4372 10 1 6.5836 -0.2900 -1.2666 11 1 6.6863 -2.4211 -2.4198 12 1 6.4862 -0.3639 -3.6882 13 7 2.0197 -0.6926 1.1994 14 6 1.5334 -2.0775 1.2428 15 6 2.1775 -2.8089 2.4226 16 6 1.8222 -2.0825 3.7239 17 1 0.7423 -2.1048 3.8700 18 8 2.4675 -2.7273 4.8238 19 6 2.2964 -0.6295 3.6325 20 6 1.6487 0.0389 2.4177 21 1 0.5648 0.0280 2.5320 22 6 2.1355 1.4855 2.3119 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.7517 -1.7715 -1.2056 27 1 1.6055 -0.2618 -2.1369 28 1 4.0608 -2.2430 -4.0358 29 1 0.4500 -2.0784 1.3627 30 1 1.7964 -2.5839 0.3142 31 1 1.8046 -3.8323 2.4638 32 1 3.2602 -2.8211 2.2962 33 1 2.2134 -3.6528 4.9413 34 1 3.3809 -0.6066 3.5254 35 1 2.0088 -0.0953 4.5381 36 1 3.2195 1.4967 2.1979 37 1 1.6743 1.9616 1.4466 38 1 1.8599 2.0286 3.2157 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705273513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = -59.866963 kcal Electronic energy + Delta-G solvation = -17047.711141 eV Core-core repulsion = 14503.545908 eV Total energy + Delta-G solvation = -2544.165233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44892 -36.76729 -33.81520 -32.12229 -32.01351 -28.95000 -27.29055 -26.72876 -23.62106 -22.96345 -21.30879 -19.97288 -18.40448 -16.98443 -16.15658 -15.74372 -14.85781 -14.57330 -14.35085 -13.98961 -13.43314 -13.33443 -12.67715 -12.24193 -11.96189 -11.85505 -11.67881 -11.57033 -11.43299 -11.10618 -11.04016 -10.76446 -10.55232 -10.48703 -10.30434 -10.20976 -9.67106 -9.57622 -9.10209 -8.92414 -8.24683 -7.43613 -5.88256 -3.85787 3.38788 3.46460 3.52470 4.29113 4.49003 4.57896 5.04248 5.10072 5.30119 5.40764 5.48935 5.60345 5.70843 5.74637 5.83336 5.85319 5.95348 6.00867 6.04415 6.11438 6.20026 6.29552 6.41036 6.49418 6.54390 6.59863 6.71109 6.77780 7.02490 7.56327 7.71551 7.73389 7.95278 8.04888 8.14154 8.59258 9.20946 9.76191 11.23692 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.008625 C = 0.007814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.454750 B = 3245.473502 C = 3582.296306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.077 0.923 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.506 5.506 14 C 0.058 3.942 15 C -0.146 4.146 16 C 0.104 3.896 17 H 0.045 0.955 18 O -0.571 6.571 19 C -0.101 4.101 20 C 0.081 3.919 21 H 0.032 0.968 22 C -0.145 4.145 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.256 0.744 29 H 0.022 0.978 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.373 0.627 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 0.745 12.072 13.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.230 5.230 14 C -0.070 4.070 15 C -0.185 4.185 16 C 0.045 3.955 17 H 0.063 0.937 18 O -0.376 6.376 19 C -0.139 4.139 20 C -0.028 4.028 21 H 0.050 0.950 22 C -0.202 4.202 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.219 0.781 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.043 1.244 11.956 13.036 hybrid contribution -0.181 -0.630 -0.242 0.698 sum -5.224 0.614 11.714 12.841 Atomic orbital electron populations 1.22529 1.00008 1.01211 1.00667 1.21993 0.89887 0.99001 0.91628 0.90478 1.19249 0.96447 0.95317 0.89931 1.21219 0.91760 1.32809 1.06871 0.92013 1.25006 0.97985 0.95925 0.96020 1.69971 1.35098 1.37104 1.12364 0.86590 0.86507 0.77557 0.77658 1.19748 1.21370 1.21442 1.62072 1.59275 1.00946 1.00715 1.22026 0.95403 0.90339 0.99247 1.22316 1.03283 0.98143 0.94714 1.21919 0.94656 0.93449 0.85438 0.93673 1.86502 1.70998 1.28832 1.51246 1.21560 1.02456 0.92831 0.97072 1.21515 0.96440 0.94114 0.90712 0.94981 1.21870 1.02696 0.94637 1.01008 0.93056 0.94081 0.92585 0.96268 0.96391 0.93415 0.96010 0.88660 0.92172 0.90038 0.78065 0.90312 0.91845 0.91519 0.92013 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.17 8.50 37.16 0.32 -2.85 16 2 C 0.08 1.66 1.90 -67.71 -0.13 1.53 16 3 H 0.08 1.57 5.92 -51.93 -0.31 1.26 16 4 C 0.03 0.69 4.27 -27.88 -0.12 0.57 16 5 C -0.49 -13.57 8.84 -34.44 -0.30 -13.88 16 6 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 N -0.51 -9.48 4.19 -218.76 -0.92 -10.40 16 14 C 0.06 1.02 4.64 -3.84 -0.02 1.01 16 15 C -0.15 -2.25 5.73 -26.61 -0.15 -2.40 16 16 C 0.10 1.46 3.54 -26.56 -0.09 1.37 16 17 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 18 O -0.57 -7.68 13.33 -35.23 -0.47 -8.15 16 19 C -0.10 -1.51 5.02 -26.65 -0.13 -1.64 16 20 C 0.08 1.27 2.00 -67.72 -0.14 1.13 16 21 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 22 C -0.14 -2.12 8.78 37.15 0.33 -1.79 16 23 H 0.05 0.87 6.52 -51.93 -0.34 0.54 16 24 H 0.04 0.62 6.65 -51.93 -0.35 0.28 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.51 6.05 -51.93 -0.31 0.19 16 27 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.02 0.36 6.62 -51.93 -0.34 0.02 16 30 H 0.10 1.97 5.93 -51.93 -0.31 1.66 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 33 H 0.37 3.37 9.09 45.56 0.41 3.78 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.92 6.21 -51.93 -0.32 0.60 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 289.40 15.07 4.36 4.36 Total: -1.00 -30.47 289.40 -7.41 -37.88 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.56 Total: 1.24 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -0.54 Total: -15.63 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.18 Total: -36.82 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.47 Total: -8.15 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.47 -7.41 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705273513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.987 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds